BAC Information

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BAC

Clone NameB6Ng01-030I07
Chromosome1 (Build37)
Map Location 58,975,190 - 58,976,278
singlet/doubletsinglet
Overlap geneTrak2
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419
Downstream geneAls2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030I07.bB6Ng01-030I07.g
ACCDH860399DH860400
length1,077945
definitionDH860399|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I07, 5' end.DH860400|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacagtctcaaagacaaatctgttttctctcatttgtgcttgt
tgttcttacatatagctacgtaagatgcctgtgtatgtgacaaaaaagca
ggggtgaacctatgtagagggcaaaggggatggcaaaggtgggggaacag
gaggtaatatgcttaacatatggtatattcttactttaaaatctttaaag
tcctatatttttaaagaaagtcaaggctttctgttactcaggaggaagga
tatcatgattagctttggaaacaaaccttttcaaatgttttcttagatct
taatacatcccaactgtttgttgttgctgctgtattccaaatctggcagt
ccttttactttttacataggtggacgaactccttattcccctcctgcact
accaagaaaaaggaagtgtctgttacctccattgtcagctgtcgctgggc
atctttggaagcctgcaggtgaagtcttagttcttccttctcgatcacat
gctgacaacatacaagagggacatgtgaggcactccttcccaaagggagc
ataagtacttcttcccttcaaagacacaccaagagtgtctatgtggggta
cagtcttagcctacagcaggggacacatcacaagtaagagtgataattaa
aagtacatgtgttccgagggtatggaccataaattcagcaatgacatcat
atccttctcgggaaaatctaatatatttgcacaaataaatacagccttgt
taggtgtttatgatatcccagcagaggagcagcactgagaacgaactctg
cccagtgagtagcacttagaatgcagtgtcccaggacgtgcttagtgagc
ctgggctgacagtgaatgacccacctctttcagtttgtgctgaaagtcta
cgatctgagaaacagggaggagatctcttcttgttaccggagctctcgtc
gctctttcccgacagctcttcatcatctggacatctgtgcattggtctcc
ctggggacagagtgactttagaccaaattaagtagaattagagcagatgc
tgtttacaacaactccggggggggggg
gaattcagtagcttaaggtattggctctggctttagagacaacaatagaa
gggactactggaacaattggtgctggttagatggagctaagaaattagtg
gtgattaagaagagaccagtatcactgaggtgaaatcttctgggaactat
tttctgagagcacaaagcagctgtgttccagagatagccaaggttgtacc
ttgtgctgcacctgaacttggaaatgtgtaagagtcacccaggtggtact
ggtttcgaaggcatgaaggggtcaaggagagcagctgagaattggcactg
tgagaggccagggaaggccattggtgaaggtgcagcttcatttacagtca
tggcccaggaatgaaggggtcatgcaaaggaattgaggtttggcaccatg
aagaaagactatgagagactattggtgacacctagttgcagcagaagact
ctcagataattggagattccaataccttgggatgatcaccaagaacagta
gcagcattggagttgagtcaaccagatcctagagtactacagagggcaga
gctggagaaatgacccaaaccgtttggaggagcccaaaagatcatatgtg
gatccccagacattggaacaagaagctgtaacattgaagttgctttggat
acgccaagatgtcagagccatgcgatgcctgcagaggaaagctactaaca
gggagtagaaccagcccaagagaacgaagtttgttgctgctgaatgctag
atctgccacaacagttaaccagtatgaaaagaattggagatctgaagagc
actttgaaactggacatggagacacagtttggagtttgacctgctagttt
taggttttgatttggttcattattccttactatgatgttttggaactgta
atatgtatcttgtgccatgtatgttggaggatgtgatttgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58975190_58976278
seq2: B6Ng01-030I07.b_47_1123

seq1  GAATTCAAACAGTCTCAAAGACAAATCTGTTTTCTCTCATTTGTGCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGTCTCAAAGACAAATCTGTTTTCTCTCATTTGTGCTTGT  50

seq1  TGTTCTTACATATAGCTACGTAAGATGCCTGTGTATGTGACAAAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACATATAGCTACGTAAGATGCCTGTGTATGTGACAAAAAAGCA  100

seq1  GGGGTGAACCTATGTAGAGGGCAAAGGGGATGGCAAAGGTGGGGGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAACCTATGTAGAGGGCAAAGGGGATGGCAAAGGTGGGGGAACAG  150

seq1  GAGGTAATATGCTTAACATATGGTATATTCTTACTTTAAAATCTTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATATGCTTAACATATGGTATATTCTTACTTTAAAATCTTTAAAG  200

seq1  TCCTATATTTTTAAAGAAAGTCAAGGCTTTCTGTTACTCAGGAGGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATTTTTAAAGAAAGTCAAGGCTTTCTGTTACTCAGGAGGAAGGA  250

seq1  TATCATGATTAGCTTTGGAAACAAACCTTTTCAAATGTTTTCTTAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGATTAGCTTTGGAAACAAACCTTTTCAAATGTTTTCTTAGATCT  300

seq1  TAATACATCCCAACTGTTTGTTGTTGCTGCTGTATTCCAAATCTGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATCCCAACTGTTTGTTGTTGCTGCTGTATTCCAAATCTGGCAGT  350

seq1  CCTTTTACTTTTTACATAGGTGGACGAACTCCTTATTCCCCTCCTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACTTTTTACATAGGTGGACGAACTCCTTATTCCCCTCCTGCACT  400

seq1  ACCAAGAAAAAGGAAGTGTCTGTTACCTCCATTGTCAGCTGTCGCTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAAAAGGAAGTGTCTGTTACCTCCATTGTCAGCTGTCGCTGGGC  450

seq1  ATCTTTGGAAGCCTGCAGGTGAAGTCTTAGTTCTTCCTTCTCGATCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGAAGCCTGCAGGTGAAGTCTTAGTTCTTCCTTCTCGATCACAT  500

seq1  GCTGACAACATACAAGAGGGACATGTGAGGCACTCCTTCCCAAAGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAACATACAAGAGGGACATGTGAGGCACTCCTTCCCAAAGGGAGC  550

seq1  ATAAGTACTTCTTCCCTTCAAAGACACACCAAGAGTGTCTATGTGGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACTTCTTCCCTTCAAAGACACACCAAGAGTGTCTATGTGGGGTA  600

seq1  CAGTCTTAGCCTACAGCAGGGGACACATCACAAGTAAGAGTGATAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAGCCTACAGCAGGGGACACATCACAAGTAAGAGTGATAATTAA  650

seq1  AAGTACATGTGTTCCGAGGGTATGGACCATAAATTCAGCAATGACATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGTGTTCCGAGGGTATGGACCATAAATTCAGCAATGACATCAT  700

seq1  ATCCTTCTCGGGAAAATCTAATATATTTGCACAAATAAATACAGCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCGGGAAAATCTAATATATTTGCACAAATAAATACAGCCTTGT  750

seq1  TAGGTGTTTATGATATCCCAGCAGAGGAGCAGCACTGAGAACGAACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTATGATATCCCAGCAGAGGAGCAGCACTGAGAACGAACTCTG  800

seq1  CCCAGTGAGTAGCACTTAGAATGCAGTGTCCCAGGACCGTGCTTAGTGAG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCAGTGAGTAGCACTTAGAATGCAGTGTCCCAGGA-CGTGCTTAGTGAG  849

seq1  CCTGGGCTGACAGTGAATGACCCACCTCTTTCAGTTTGTGCTGAAGGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGGGCTGACAGTGAATGACCCACCTCTTTCAGTTTGTGCTGAAAGTCT  899

seq1  ACGATCTGAGACAGCAGGGAGGAGATCTCCTCTTGGTACCGGAGCAGCTC  950
      ||||||||||| | ||||||||||||||| ||||| |||||||||  |||
seq2  ACGATCTGAGA-AACAGGGAGGAGATCTCTTCTTGTTACCGGAGC-TCTC  947

seq1  GTCGCTCTTTCCCGACAGCTCTTCAGTCATTCTGGACATCTGTGCATTGG  1000
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GTCGCTCTTTCCCGACAGCTCTTCA-TCA-TCTGGACATCTGTGCATTGG  995

seq1  TCTCACCTGGGGACAGAGTGACATTTAGAACCAGAATAAAGGTAGAATTA  1050
      |||| ||||||||||||||||| ||||| |||| | |||  |||||||||
seq2  TCTC-CCTGGGGACAGAGTGAC-TTTAG-ACCAAATTAA--GTAGAATTA  1040

seq1  GAAGCAGATGCTGTTTTACAACAAGCACGGGGGGGGGGG  1089
      | ||||||||||| ||||||||||   ||||||||||||
seq2  G-AGCAGATGCTG-TTTACAACAACTCCGGGGGGGGGGG  1077