BAC Information

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BAC

Clone NameB6Ng01-030P24
Chromosome1 (Build37)
Map Location 88,810,531 - 88,982,266
singlet/doubletdoublet
Overlap gene4930429A22Rik, LOC208256
Upstream gene4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, EG620213
Downstream geneAkp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P24.bB6Ng01-030P24.g
ACCDH860737DH860738
length591237
definitionDH860737|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P24, 5' end.DH860738|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,810,531 - 88,811,128)(88,982,030 - 88,982,266)
sequence
aaatgacgaaagcagtagttttaaagttgacttgtttttgaaatggaaac
ctgaccttacagttcatccatgccctccctctgcctccagcacctggaag
gctcacgctgctccctggagtgggtggtgtggaagtggtgactgtaacat
cctgtcatggcttccttaatgagaaagcatgagagaaagctatgacaagt
ttgccattctaggaaactttccacagctgctgctttaattaaaactttct
tgggcccaatgaacagaaaccactagagctcacttaagcagaaaagggaa
tctgttttaaggcttctgtagtgcctttcaaccaaagggcagggagctta
ggaatgcaatgaggcaggaacccagaaacttcttgtggcctcttcatgtt
cccttcacccagaggaacctcctttgcctcctggtgggaagatcactgtg
ttgtcctggcctatcctcccagaggcagactagtttctctcctcctcaga
accccactcttccatctctctttctctgtcccagttctagactctgtggc
aaggctcaaactgtctcagcttgggtccgtgctgattcagg
ctgcccacctgaaggcctgcagtttcactaaacacaaattatcctgggaa
gttgattgtcgtccccccccccacacacacacacacaaactctgctcctc
ccctatagggtgcgagctcgagggaggaggaggaggggatattctcatgc
agccggtgttagtgaggagtttttgttgtccaggctcatggtcagctgca
aggtgtttttgttgttttgttttgtttttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88810531_88811128
seq2: B6Ng01-030P24.b_45_641

seq1  GAATTCAAATGACGAAAGCAGTAGTTTTAAAGTTGACTTGTTTTTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGACGAAAGCAGTAGTTTTAAAGTTGACTTGTTTTTGAAAT  50

seq1  GGAAACCTGACCTTACAGTTCATCCATGCCCTCCCTCTGCCTCCAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGACCTTACAGTTCATCCATGCCCTCCCTCTGCCTCCAGCACC  100

seq1  TGGAAGGCTCACGCTGCTCCCTGGAGTGGGTGGTGTGGAAGTGGTGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTCACGCTGCTCCCTGGAGTGGGTGGTGTGGAAGTGGTGACTG  150

seq1  TAACATCCTGTCATGGCTTCCTTAATGAGAAAGCATGAGAGAAAGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCCTGTCATGGCTTCCTTAATGAGAAAGCATGAGAGAAAGCTATG  200

seq1  ACAAGTTTGCCATTCTAGGAAACTTTCCACAGCTGCTGCTTTAATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGCCATTCTAGGAAACTTTCCACAGCTGCTGCTTTAATTAAAA  250

seq1  CTTTCTTGGGCCCAATGAACAGAAACCACTAGAGCTCACTTAAGCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGGGCCCAATGAACAGAAACCACTAGAGCTCACTTAAGCAGAAA  300

seq1  AGGGAATCTGTTTTAAGGCTTCTGTAGTGCCTTTCAACCAAAGGGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCTGTTTTAAGGCTTCTGTAGTGCCTTTCAACCAAAGGGCAGGG  350

seq1  AGCTTAGGAATGCAATGAGGCAGGAACCCAGAAACTTCTTGTGGCCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAATGCAATGAGGCAGGAACCCAGAAACTTCTTGTGGCCTCTT  400

seq1  CATGTTCCCTTCACCCAGAGGAACCTCCTTTGCCTCCTGGTGGGAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCTTCACCCAGAGGAACCTCCTTTGCCTCCTGGTGGGAAGATC  450

seq1  ACTGTGTTGTCCTGGCCTATCCTCCCAGAGGCAGACTAGTTTCTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTGTCCTGGCCTATCCTCCCAGAGGCAGACTAGTTTCTCTCCTC  500

seq1  CTCAGAACCCCACTCTTCCATCTCTCTTTCTCTGTCCCAGTTCTAGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACCCCACTCTTCCATCTCTCTTTCTCTGTCCCAGTTCTAGACTC  550

seq1  TGTGGCAAGGCTCAAACTGTCTCAGCTTGGGTTCAGTGCTGATTCAGG  598
      ||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TGTGGCAAGGCTCAAACTGTCTCAGCTTGGG-TCCGTGCTGATTCAGG  597

seq1: chr1_88982030_88982266
seq2: B6Ng01-030P24.g_77_313 (reverse)

seq1  AAAAAAACAAAAACAAAACAAAACAACAAAAACACCTTGCAGCTGACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACAAAACAAAACAACAAAAACACCTTGCAGCTGACCAT  50

seq1  GAGCCTGGACAACAAAAACTCCTCACTAACACCGGCTGCATGAGAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGACAACAAAAACTCCTCACTAACACCGGCTGCATGAGAATATC  100

seq1  CCCTCCTCCTCCTCCCTCGAGCTCGCACCCTATAGGGGAGGAGCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCTCCTCCCTCGAGCTCGCACCCTATAGGGGAGGAGCAGAGTT  150

seq1  TGTGTGTGTGTGTGTGGGGGGGGGGACGACAATCAACTTCCCAGGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGGGGGGGGGGACGACAATCAACTTCCCAGGATAAT  200

seq1  TTGTGTTTAGTGAAACTGCAGGCCTTCAGGTGGGCAG  237
      |||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAGTGAAACTGCAGGCCTTCAGGTGGGCAG  237