BAC Information

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BAC

Clone NameB6Ng01-031B13
Chromosome18 (Build37)1 (Build37)
Map Location 18,109,699 - 18,110,45110,656,977 - 10,658,088
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031B13.bB6Ng01-031B13.g
ACCDH860807DH860808
length1,0921,095
definitionDH860807|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B13, 5' end.DH860808|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,109,699 - 18,110,451)(10,656,977 - 10,658,088)
sequence
gaattctgcagagacagtctgaactaaagagtgtcaacccaatgagatga
aatctctctcctgagaaatctcagctggagcaggagtgtccaggagtagg
cacagctgtgatagaggatggtgggaagtggcaccgaagttagagcttgg
catggagtgctgcaatagcagctgaggctgcagaatcacagagaaatgag
ggcagagagcagggagtcaccccttgcaatgaaacacagagaagtcatca
ccaagaggaactttcttttagaacacaaaggacgttcttcagcaagtgct
tcattccaactcggccaatcctgtccagtgattgcactgcattagaagct
ctgatcaggcttaggagttctctggtggaatttttagggtcacttatata
tactatcatatcatctgcaaaaagtgatattttgacttcttcctttccaa
tttgcatccccttgatctccttttgttttctaattgctctggctaggact
tcaagtactatgttgaataggtagggagagagtggacagccttgtctagt
tcctgattttactgggattgcttccagcttctcaccatttactttgatgt
tggctactggtttgctgtagattgtttttatcatgtttaggtatggacct
tgaattcctgatctttccaagacttttatcatgaatgggtgttggatttt
gtcaaatgctttctcagcatgtaacgagatgatcatgtggtttttgtctt
tgagtttgtttatataatggattacattgatggattttcgtatattaaac
catccctgcatccctgggatgaaccctacttggtcaggatggatgattgc
tttaatgtgttcttggattcggtagcgagaattttattgaggattttgca
tcgatattcataaggaaattggtctgaagtctctattttgtgggtccttt
tgtggttagtatcagagtaattgtgctcatagaatgagttgggtagaggt
accttctgttctattttgtgaatagttgtgaagaactgggattaaatctt
ctttgaaggtctgataaaactcgtataagcctctggtcctgg
gaattcactggtcttactacccaggcagaatgacaatggtctattagaga
agcagttagagtatcagttactcaatactttacagagtttataagacaca
ttatatgagaaaacatttgcattatgggaattccaggggagaagaaagac
attgaaagcctatttcataaaataacagctgaaaactttttaaatcttca
aagagctgtaaatgaccagatctgagaagctcaaaacgaccccaactaga
ttcagtgggaaaaaaaaaaaaaaaaaaaccttcaccaaaataaattacat
tgaagatgtcaaaactacaagacaacgagaaaattctaaaaacagcatta
aaattttaagtcatatacatgagatgctcatttgacttttcagatttctc
agcagaaatcttacattgcagaagagaataagatggtgcattcaaaatac
taaaataacaaaactttccaccaaggttatatgcagcaacatttccttca
gaaataaagaaaacaaagccttttctggataagaagaaaattaagaggtg
ccatcactatcagatcaaacctacaagaaatggctaagagagttctgctg
aagacaaatgataataacagccatcatgaaaatatgcccccccctctata
tatatatatgtaacttagaataacagattcacagaatatgaagaaagtca
aatcttagcatgacagaaaactgttatttcacaaagcccccaagaaatta
gaagagaatataagcagaagataacaaaatgacaaaaggacattagcatg
gatcaagtgaatttaattcgctagtcagaagacatgcatagactgaaagt
aaacaattgaaaactataaattacataaatggaaaccaacactgagcaag
agtgcttatatcacatgagacaggcacattcataaaaagcagcaaaagaa
acacaggtggtcatcatctatcaataaagggcgtctcaacaagagatgtg
atcatagactgtcaaggaccactgctctctctgctttctgcactcttcaa
catatgctagtcagatcggaggtttgcctacacgctttacaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18109699_18110451
seq2: B6Ng01-031B13.b_402_1138 (reverse)

seq1  CCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTCCAAAGAAGA  50
      |||||||||||  || ||| | | ||||| |||||||||| |||||||||
seq2  CCAGGACCAGA--GGCTTA-TAC-GAGTTTTATCAGACCTTCAAAGAAGA  46

seq1  TCTAATCCCAGTTCTTCACAAACTATTCCACAAAATAGAAACAGAAGGTA  100
      | ||||||||||||||||| ||||||| |||||||||| |||||||||||
seq2  TTTAATCCCAGTTCTTCAC-AACTATT-CACAAAATAG-AACAGAAGGTA  93

seq1  -CTCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACC  149
       ||||||||||||||||||||||   |||||||||||||||||   ||||
seq2  CCTCTACCCAACTCATTCTATGA--GCACAATTACTCTGATAC--TAACC  139

seq1  ACAAAAAGACCCCACAAAGATAGAGAACTTCAGACCAATATCCCTTCTGA  199
      |||||| || |||||||| |||||| ||||||||||||| | |||| |||
seq2  ACAAAAGGA-CCCACAAA-ATAGAG-ACTTCAGACCAAT-TTCCTTATGA  185

seq1  ATATTGGTGCAAAAATCCTCAATAAAGTTCTTGCTAACCGAATCCAAGAA  249
      |||| | ||| ||||||||||||||| |||| ||| ||||||||||||||
seq2  ATATCGATGC-AAAATCCTCAATAAAATTCTCGCT-ACCGAATCCAAGAA  233

seq1  CACATCAAAACAATCTTCCATCCTGACCAAGTAGGTTTCATCCCAGGGAT  299
      ||||| ||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  CACATTAAAGCAATCATCCATCCTGACCAAGTAGGGTTCATCCCAGGGAT  283

seq1  GCAGGGATGGTTCAATATACAGAAATCCATCAATGTAATCCAGTATATAA  349
      |||||||||||| |||||||  |||||||||||||||||||| |||||||
seq2  GCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAA  333

seq1  ACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCTGAGAAA  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAAACTCAAAGACAAAAACCACATGATCATCTCGTTACATGCTGAGAAA  383

seq1  GCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGACAAAATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATC  433

seq1  AGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAC  499
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  AGGAATTCAAGGTCCATACCTAAACATGATAAAAACAATCTACAGCAAAC  483

seq1  CAGTAGCCAGCATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTA  549
      ||||||||| |||||||||||||||||||||||| |||||||||||| ||
seq2  CAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCAGTA  533

seq1  AAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCCATTCAACAT  599
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  AAATCAGGAACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACAT  583

seq1  TGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGG  649
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTACTTGAAGTCCTAGCCAGAGCAATTAGAAAACAAAAGGAGATCAAGG  633

seq1  GGATACAAATTGGAAAGGAAGAAGTCAAATTATCACTTTTTGCAGATGAT  699
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGATGCAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGAT  683

seq1  ATGATAGTATATATACATGACCCTAAAAATTCCACCAGAGAACTTCTAAG  749
      |||||||||||||||  ||||||||||||||||||||||||||| |||||
seq2  ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAG  733

seq1  CCTG  753
      ||||
seq2  CCTG  737

seq1: chr1_10656977_10658088
seq2: B6Ng01-031B13.g_67_1161

seq1  GAATTCACTGGTCTTACTACCCAGGCAGAATGACAATGGTCTATTAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTCTTACTACCCAGGCAGAATGACAATGGTCTATTAGAGA  50

seq1  AGCAGTTAGAGTATCAGTTACTCAATACTTTACAGAGTTTATAAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAGAGTATCAGTTACTCAATACTTTACAGAGTTTATAAGACACA  100

seq1  TTATATGAGAAAACATTTGCATTATGGGAATTCCAGGGGAGAAGAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGAGAAAACATTTGCATTATGGGAATTCCAGGGGAGAAGAAAGAC  150

seq1  ATTGAAAGCCTATTTCATAAAATAACAGCTGAAAACTTTTTAAATCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCCTATTTCATAAAATAACAGCTGAAAACTTTTTAAATCTTCA  200

seq1  AAGAGCTGTAAATGACCAGATCTGAGAAGCTCAAAACGACCCCAACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTAAATGACCAGATCTGAGAAGCTCAAAACGACCCCAACTAGA  250

seq1  TTCAGTGGGAAAAAAAAAAAAAAAAAAACCTTCACCAAAATAAATTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGGAAAAAAAAAAAAAAAAAAACCTTCACCAAAATAAATTACAT  300

seq1  TGAAGATGTCAAAACTACAAGACAACGAGAAAATTCTAAAAACAGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTCAAAACTACAAGACAACGAGAAAATTCTAAAAACAGCATTA  350

seq1  AAATTTTAAGTCATATACATGAGATGCTCATTTGACTTTTCAGATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGTCATATACATGAGATGCTCATTTGACTTTTCAGATTTCTC  400

seq1  AGCAGAAATCTTACATTGCAGAAGAGAATAAGATGGTGCATTCAAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAATCTTACATTGCAGAAGAGAATAAGATGGTGCATTCAAAATAC  450

seq1  TAAAATAACAAAACTTTCCACCAAGGTTATATGCAGCAACATTTCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAAAACTTTCCACCAAGGTTATATGCAGCAACATTTCCTTCA  500

seq1  GAAATAAAGAAAACAAAGCCTTTTCTGGATAAGAAGAAAATTAAGAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGAAAACAAAGCCTTTTCTGGATAAGAAGAAAATTAAGAGGTG  550

seq1  CCATCACTATCAGATCAAACCTACAAGAAATGGCTAAGAGAGTTCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTATCAGATCAAACCTACAAGAAATGGCTAAGAGAGTTCTGCTG  600

seq1  AAGACAAATGATAATAACAGCCATCATGAAAATATGCCCCCCCCTCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATGATAATAACAGCCATCATGAAAATATGCCCCCCCCTCTATA  650

seq1  TATATATATGTAACTTAGAATAACAGATTCACAGAATATGAAGAAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTAACTTAGAATAACAGATTCACAGAATATGAAGAAAGTCA  700

seq1  AATCTTAGCATGACAGAAAACTGTTATTTCACAAAGCCCCCAAGAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGCATGACAGAAAACTGTTATTTCACAAAGCCCCCAAGAAATTA  750

seq1  GAAGAGAATATAAGCAGAAGATAACAAAATGACAAAAGGACATTAGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATATAAGCAGAAGATAACAAAATGACAAAAGGACATTAGCATG  800

seq1  GATCAAGTGAATTTAATTCGCTAGTCAGAAGACATGCATAGACTGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGTGAATTTAATTCGCTAGTCAGAAGACATGCATAGACTGAAAGT  850

seq1  AAACAATTGAAAACTATAAATTACATAAATGGAAACCAACACTGAGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTGAAAACTATAAATTACATAAATGGAAACCAACACTGAGCAAG  900

seq1  AGTGCTTATATTCACATGAGACAGGGCACATTCAATAAAAAGCAGCAAAA  950
      |||||||||| |||||||||||| ||||||||| ||||||||||||||||
seq2  AGTGCTTATA-TCACATGAGACA-GGCACATTC-ATAAAAAGCAGCAAAA  947

seq1  GAAACACAGGTGGTCATCATCTATCAATAAAGGGGCGTCTCAACAAGAAG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  GAAACACAGGTGGTCATCATCTATCAATAAA-GGGCGTCTCAACAAG-AG  995

seq1  ATGTGATCATTAGAACCTGTCAAAGGACCACCTGCTCTCTCTGCCTTTCT  1050
      ||||||||| ||||  ||||| |||||||| |||||||||||| ||||||
seq2  ATGTGATCA-TAGA--CTGTC-AAGGACCA-CTGCTCTCTCTG-CTTTCT  1039

seq1  GCAACTCTTCACACATATGCTAGTCAGATCGGGAGGTATGCCCTACACCG  1100
      || |||||||| |||||||||||||||||| |||||| || |||||| ||
seq2  GC-ACTCTTCA-ACATATGCTAGTCAGATC-GGAGGTTTG-CCTACA-CG  1084

seq1  CTATCACAATAT  1112
      || | |||||||
seq2  CT-TTACAATAT  1095