BAC Information

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BAC

Clone NameB6Ng01-031G23
Chromosome1 (Build37)
Map Location 176,792,182 - 176,952,728
singlet/doubletdoublet
Overlap geneGrem2
Upstream geneLOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031G23.bB6Ng01-031G23.g
ACCDH861050DH861051
length8841,087
definitionDH861050|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G23, 5' end.DH861051|Mus musculus domesticus DNA, BAC clone: B6Ng01-031G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,952,081 - 176,952,728)(176,792,182 - 176,793,281)
sequence
gaattccatattaccctttcatatgtacttactgttttacaaaatatata
agacttttctgtgtatttggttaaccgcccctttctctaccccctctcca
cttaaccttccctccccagcccccccacttttactttcagatcacatatg
gtctactaatcccttccctgaaagcatcttcacaactctaatgccccctt
ctagcttctgagcctcggcaggttctccaagcaaaaggtacacatatgaa
atttcaatgctatgatctataaaaagcagtttcaaaaaaatagagtcctg
actacctttcaatgggccagaagatgtcatcaggtgtgaagtcatcaatg
ctcttaccagcctttgaacactgcaagctgcaatgtcaacctgtcagacg
agatgaacccaatggtgagctagtgttgtaactgccatgggaagacccaa
ccactttctgattggaattttaggccttttctgcaagaagaagccatact
tggtactgtaaaactgatgaaaatcccataactggaaggtacaggcttta
gagaggaccctgctagtattgtttacttagtgaacacggtgtcatagtgc
cttctaaatgtttatgctcatacctatagattggttctgttctcaccctt
ggttagaggagcttgtagtggattacagttaatgcagagactcataactg
ctcagagtctcaaaaataagtgactattgagtactcaatcctaaatagaa
taaatttacaacccctttaaaatctcagagaacactgcaaggcaggtgaa
ggaaagaatgtaaaagctggagggtgggaaggggtactatgaaatgtcat
tttctcaatatgccacgactgctcatatctatga
gaattcaccgagacaaacttgcttattccacgtctgtgccagaaccagca
tgggctatccatgatccttactacccatactctctagacaaacactttga
gtctttaattgcatggttacaagcatggccactagggtatggagacaaaa
ctcaaattctgaactgtcaaaattctacatctttaacttcaatatacact
atataagatggaaggcatggctgtggctcagtcattgggcttcttatcta
ccctcctacaggaatatgaagttatagaaagttataagaataaggtagat
gatcttttgagtgatgtttagagagatgaccccaaattgtggtaaactga
gcttttaagaaccatttctaagtgctaagcacctggcatttaatgtatct
cttactagaaagcttttcattcttttgttatattcaaggagacaaaaaat
ttatgcaagattggcttctattgaaatgtgtactgaatatcagacttgac
taagaggaggaggttttattatttgcttctcaaataatgaggtttctcat
gagaatttgaaattcctgggattgagttttactatgtgaacggcataaac
aagaggctcagctcttttctttaaactagtgtattctaatttccaaatga
gcatggttctcaccaaccagtcactttgtgcttacctggcctccaatctc
taatactttaggaacattgttgactacaagaagaaagattaattggatag
gggactgggatatatggtttttttttccctatagaaaacttgaaagccac
acaccagctatattcaaatagttaattaaacaactaagtaattgggcacc
aagtgtatatcgcggtctgttagtgagtggctgaaataaactttccttgc
aactatgtctctctggccctgagcacaggttcagtgttctggcaggtact
tctcacccttaccaaggcttgccaaaaagaataactacaggctgctgctg
aggtttttgactgctgatgccttgaaaaattctttcattcagtgagcttc
catcacgcccaagctttgcaagcccatacaggagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176952081_176952728
seq2: B6Ng01-031G23.b_49_696 (reverse)

seq1  GGGTGAGAACAGAACCAATCTATAGGTATGAGCATAAACATTTAGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAACAGAACCAATCTATAGGTATGAGCATAAACATTTAGAAGGC  50

seq1  ACTATGACACCGTGTTCACTAAGTAAACAATACTAGCAGGGTCCTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGACACCGTGTTCACTAAGTAAACAATACTAGCAGGGTCCTCTCTA  100

seq1  AAGCCTGTACCTTCCAGTTATGGGATTTTCATCAGTTTTACAGTACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTACCTTCCAGTTATGGGATTTTCATCAGTTTTACAGTACCAAG  150

seq1  TATGGCTTCTTCTTGCAGAAAAGGCCTAAAATTCCAATCAGAAAGTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTCTTCTTGCAGAAAAGGCCTAAAATTCCAATCAGAAAGTGGTT  200

seq1  GGGTCTTCCCATGGCAGTTACAACACTAGCTCACCATTGGGTTCATCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTCCCATGGCAGTTACAACACTAGCTCACCATTGGGTTCATCTCG  250

seq1  TCTGACAGGTTGACATTGCAGCTTGCAGTGTTCAAAGGCTGGTAAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGGTTGACATTGCAGCTTGCAGTGTTCAAAGGCTGGTAAGAGCA  300

seq1  TTGATGACTTCACACCTGATGACATCTTCTGGCCCATTGAAAGGTAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACTTCACACCTGATGACATCTTCTGGCCCATTGAAAGGTAGTCA  350

seq1  GGACTCTATTTTTTTGAAACTGCTTTTTATAGATCATAGCATTGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTATTTTTTTGAAACTGCTTTTTATAGATCATAGCATTGAAATTT  400

seq1  CATATGTGTACCTTTTGCTTGGAGAACCTGCCGAGGCTCAGAAGCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTACCTTTTGCTTGGAGAACCTGCCGAGGCTCAGAAGCTAGAA  450

seq1  GGGGGCATTAGAGTTGTGAAGATGCTTTCAGGGAAGGGATTAGTAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATTAGAGTTGTGAAGATGCTTTCAGGGAAGGGATTAGTAGACCA  500

seq1  TATGTGATCTGAAAGTAAAAGTGGGGGGGCTGGGGAGGGAAGGTTAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATCTGAAAGTAAAAGTGGGGGGGCTGGGGAGGGAAGGTTAAGTG  550

seq1  GAGAGGGGGTAGAGAAAGGGGCGGTTAACCAAATACACAGAAAAGTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGGTAGAGAAAGGGGCGGTTAACCAAATACACAGAAAAGTCTTA  600

seq1  TATATTTTGTAAAACAGTAAGTACATATGAAAGGGTAATATGGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGTAAAACAGTAAGTACATATGAAAGGGTAATATGGAATTC  648

seq1: chr1_176792182_176793281
seq2: B6Ng01-031G23.g_68_1154

seq1  GAATTCACCGAGACAAACTTGCTTATTCCACGTCTGTGCCAGAACCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGAGACAAACTTGCTTATTCCACGTCTGTGCCAGAACCAGCA  50

seq1  TGGGCTATCCATGATCCTTACTACCCATACTCTCTAGACAAACACTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATCCATGATCCTTACTACCCATACTCTCTAGACAAACACTTTGA  100

seq1  GTCTTTAATTGCATGGTTACAAGCATGGCCACTAGGGTATGGAGACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAATTGCATGGTTACAAGCATGGCCACTAGGGTATGGAGACAAAA  150

seq1  CTCAAATTCTGAACTGTCAAAATTCTACATCTTTAACTTCAATATACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTCTGAACTGTCAAAATTCTACATCTTTAACTTCAATATACACT  200

seq1  ATATAAGATGGAAGGCATGGCTGTGGCTCAGTCATTGGGCTTCTTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATGGAAGGCATGGCTGTGGCTCAGTCATTGGGCTTCTTATCTA  250

seq1  CCCTCCTACAGGAATATGAAGTTATAGAAAGTTATAAGAATAAGGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTACAGGAATATGAAGTTATAGAAAGTTATAAGAATAAGGTAGAT  300

seq1  GATCTTTTGAGTGATGTTTAGAGAGATGACCCCAAATTGTGGTAAACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTGAGTGATGTTTAGAGAGATGACCCCAAATTGTGGTAAACTGA  350

seq1  GCTTTTAAGAACCATTTCTAAGTGCTAAGCACCTGGCATTTAATGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGAACCATTTCTAAGTGCTAAGCACCTGGCATTTAATGTATCT  400

seq1  CTTACTAGAAAGCTTTTCATTCTTTTGTTATATTCAAGGAGACAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGAAAGCTTTTCATTCTTTTGTTATATTCAAGGAGACAAAAAAT  450

seq1  TTATGCAAGATTGGCTTCTATTGAAATGTGTACTGAATATCAGACTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAGATTGGCTTCTATTGAAATGTGTACTGAATATCAGACTTGAC  500

seq1  TAAGAGGAGGAGGTTTTATTATTTGCTTCTCAAATAATGAGGTTTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAGGAGGTTTTATTATTTGCTTCTCAAATAATGAGGTTTCTCAT  550

seq1  GAGAATTTGAAATTCCTGGGATTGAGTTTTACTATGTGAACGGCATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTGAAATTCCTGGGATTGAGTTTTACTATGTGAACGGCATAAAC  600

seq1  AAGAGGCTCAGCTCTTTTCTTTAAACTAGTGTATTCTAATTTCCAAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTCAGCTCTTTTCTTTAAACTAGTGTATTCTAATTTCCAAATGA  650

seq1  GCATGGTTCTCACCAACCAGTCACTTTGTGCTTACCT-GCCTCCAATCTC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCATGGTTCTCACCAACCAGTCACTTTGTGCTTACCTGGCCTCCAATCTC  700

seq1  TAATACTTTAGGAACATTGTTGACTACAAGAAGAAAGATTAATTGGATA-  748
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATACTTTAGGAACATTGTTGACTACAAGAAGAAAGATTAATTGGATAG  750

seq1  GGGACT-GGATATATGGTTTTTTTTTCCCTATAG-AAACCTGAAAGCCAC  796
      |||||| ||||||||||||||||||||||||||| |||| ||||||||||
seq2  GGGACTGGGATATATGGTTTTTTTTTCCCTATAGAAAACTTGAAAGCCAC  800

seq1  ACACCAGCTATATTCAATTAGTTAATTAAAACAACTAAGTAATT-GGCAC  845
      ||||||||||||||||| ||||||||| |||||||||||||||| |||||
seq2  ACACCAGCTATATTCAAATAGTTAATT-AAACAACTAAGTAATTGGGCAC  849

seq1  CAAGTGTATATCGCGGTCTGTTTAGTGAGTGGCTGAAATAAACCTTCACT  895
      |||||||||||||||||||| |||||||||||||||||||||| ||| ||
seq2  CAAGTGTATATCGCGGTCTG-TTAGTGAGTGGCTGAAATAAACTTTC-CT  897

seq1  TGCAACTATGTCTCTCTGGCCCCTGAGCACAGGTTCAAGTGTTCTGGCAA  945
      ||||||||||||||||||| |||||||||||||||| |||||||||||| 
seq2  TGCAACTATGTCTCTCTGG-CCCTGAGCACAGGTTC-AGTGTTCTGGCAG  945

seq1  GTCACTTCTCACCC-TACCACAGCCTTGCCAGAGAGATGATCAACAGGCT  994
      || ||||||||||| ||||| || ||||||| | |||  | | |||||||
seq2  GT-ACTTCTCACCCTTACCA-AGGCTTGCCAAAAAGAATAACTACAGGCT  993

seq1  GCCTGCTGAGGTTTTATGACTGCCTGTAGCCTTAGAACAGCTCTTTCAAT  1044
      | ||||||||||||| |||||| |||  ||||| ||| |  ||||||| |
seq2  G-CTGCTGAGGTTTT-TGACTG-CTGATGCCTT-GAAAAATTCTTTCATT  1039

seq1  CCAAGTGGAGCTTCAGACTCAGCACCAAGCTTTGCCAAAGCCACATCAAG  1094
      |  ||| |||||||    |||   |||||||||||  ||||| |||  ||
seq2  C--AGT-GAGCTTC--CATCACGCCCAAGCTTTGC--AAGCC-CATACAG  1081

seq1  GAGAAT  1100
      ||||||
seq2  GAGAAT  1087