BAC Information

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BAC

Clone NameB6Ng01-031J23
Chromosome1 (Build37)
Map Location 183,573,978 - 183,692,575
singlet/doubletdoublet
Overlap geneA230079K17Rik
Upstream geneLin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121
Downstream geneLbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031J23.bB6Ng01-031J23.g
ACCDH861182DH861183
length5901,038
definitionDH861182|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J23, 5' end.DH861183|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,691,986 - 183,692,575)(183,573,978 - 183,575,024)
sequence
gaattctccagaccggtttttatttcttccgaagctaatactcccgcaac
actgttctcattttacttgtatatttgtaaatggtatcatttatttttta
acctcttggctttagataaatagaatctccatgattttgttactatctga
cctcatccactttatgtgttaggcttactctttctcgttataacttttga
gcatattaagatttctttttccaaaggcagttggacttatctgaccggca
tgaatgattctttgatgaacatgcccagttatgtatgcatttctcttttt
cttttgagaaagtgttattctgtagcccaggcttgaactcacagccttct
tatctctgcccaagtgctggggttacaagtgtgtctgccattcggggctt
gtatacatgtcgtttaggtaaaatactatgagataaaggttggattacag
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagaggagagagagagaatatttgtatatgtatatatatgtg
tgtatgtatatatatatatatatatatttgagtagtatca
gaattccttcacctttttaaagtttaaaattaaaaaatttcagattataa
tgtgaaattaagataatccttttcttttttttcttttctctctctctttc
tcttttttttgttttttcgagacagggtttctctgtgtagccctggctgt
cctggaactcactctgtagaccaggctggcctcgaactcagagatccacc
tgcctctgcctcccaagtgctgggattaaaggcatgtgccaccacacccg
gctctcataaattattttcttaaaggtatcaattatattatattatgtta
tattataacacattttttattgttactgttaaaagttactccagactttg
tagtttaaaactattaaatttgttaccttaaagatgtccctgctgcgatc
aaggagtcagcaggttcttagagagaaaaatctcaattctgacctccacc
agctcctagagagatggtcaccagaacctcaggctcttcctccatcttca
aagctggtcatgttccaaccttccttctccagtccgatctcctgctcaca
gccagaaaaaaagtctctagttataaggattcatgtgacaggtgacccag
aacagtccctccatctcaagattcttagtcacatctgccctgtctctctt
gccatctttacaggtgtgggggttaggacatgagtgactttgtaggaagc
cattgttctgcatacttggtagagcgaatatgattgcttttcttgagatt
aaaagagaggaagcctgcagagagggctcgaggattaagcgcacttcctg
ccttgcagaggattcagttcagttcccagcacccacatagtagctcacag
tcttctgtaactgcgttccatagacgcctctcatgatggcccctgcatac
atgtggtgcacatgtacacatgcaggcacatggaatatgcacataaacaa
tttaggacaaaggaggaaatttagaaaagtgtggataacagaaaacaaaa
ttgtcagttgttctagaatggtgaaccctccctcgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183691986_183692575
seq2: B6Ng01-031J23.b_48_637 (reverse)

seq1  TGATACTACTCATATATATATATATATATATATACATACACACATATATA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGATACTACTCAAATATATATATATATATATATACATACACACATATATA  50

seq1  TACATATACATATATTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACATATACAAATATTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTAATCCA  150

seq1  ACCTTTATCTCATAGTATTTTACCTAAACGACATGTATACAAGCCCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATCTCATAGTATTTTACCTAAACGACATGTATACAAGCCCCGAA  200

seq1  TGGCAGACACACTTGTAACCCCAGCACTTGGGCAGAGATAAGAAGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACACACTTGTAACCCCAGCACTTGGGCAGAGATAAGAAGGCTGT  250

seq1  GAGTTCAAGCCTGGGCTACAGAATAACACTTTCTCAAAAGAAAAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGCCTGGGCTACAGAATAACACTTTCTCAAAAGAAAAAGAGAA  300

seq1  ATGCATACATAACTGGGCATGTTCATCAAAGAATCATTCATGCCGGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACATAACTGGGCATGTTCATCAAAGAATCATTCATGCCGGTCAG  350

seq1  ATAAGTCCAACTGCCTTTGGAAAAAGAAATCTTAATATGCTCAAAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCAACTGCCTTTGGAAAAAGAAATCTTAATATGCTCAAAAGTTA  400

seq1  TAACGAGAAAGAGTAAGCCTAACACATAAAGTGGATGAGGTCAGATAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGAAAGAGTAAGCCTAACACATAAAGTGGATGAGGTCAGATAGTA  450

seq1  ACAAAATCATGGAGATTCTATTTATCTAAAGCCAAGAGGTTAAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCATGGAGATTCTATTTATCTAAAGCCAAGAGGTTAAAAAATAA  500

seq1  ATGATACCATTTACAAATATACAAGTAAAATGAGAACAGTGTTGCGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCATTTACAAATATACAAGTAAAATGAGAACAGTGTTGCGGGAG  550

seq1  TATTAGCTTCGGAAGAAATAAAAACCGGTCTGGAGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTTCGGAAGAAATAAAAACCGGTCTGGAGAATTC  590

seq1: chr1_183573978_183575024
seq2: B6Ng01-031J23.g_65_1102

seq1  GAATTCCTTCACCTTTTTAAAGTTTAAAATTAAAAAATTTCAGATTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCACCTTTTTAAAGTTTAAAATTAAAAAATTTCAGATTATAA  50

seq1  TGTGAAATTAAGATAATCCTTTTCTTTTTTTTCTTTTCTCTCTCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTAAGATAATCCTTTTCTTTTTTTTCTTTTCTCTCTCTCTTTC  100

seq1  TCTTTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  150

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACC  200

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCCG  250

seq1  GCTCTCATAAATTATTTTCTTAAAGGTATCAATTATATTATATTATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATAAATTATTTTCTTAAAGGTATCAATTATATTATATTATGTTA  300

seq1  TATTATAACACATTTTTTATTGTTACTGTTAAAAGTTACTCCAGACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAACACATTTTTTATTGTTACTGTTAAAAGTTACTCCAGACTTTG  350

seq1  TAGTTTAAAACTATTAAATTTGTTACCTTAAAGATGTCCCTGCTGCGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAAACTATTAAATTTGTTACCTTAAAGATGTCCCTGCTGCGATC  400

seq1  AAGGAGTCAGCAGGTTCTTAGAGAGAAAAATCTCAATTCTGACCTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCAGCAGGTTCTTAGAGAGAAAAATCTCAATTCTGACCTCCACC  450

seq1  AGCTCCTAGAGAGATGGTCACCAGAACCTCAGGCTCTTCCTCCATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTAGAGAGATGGTCACCAGAACCTCAGGCTCTTCCTCCATCTTCA  500

seq1  AAGCTGGTCATGTTCCAACCTTCCTTCTCCAGTCCGATCTCCTGCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTCATGTTCCAACCTTCCTTCTCCAGTCCGATCTCCTGCTCACA  550

seq1  GCCAGAAAAAAAGTCTCTAGTTATAAGGATTCATGTGACAGGTGACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAAAAAGTCTCTAGTTATAAGGATTCATGTGACAGGTGACCCAG  600

seq1  AACAGTCCCTCCATCTCAAGATTCTTAGTCACATCTGCCCTGTCTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCCTCCATCTCAAGATTCTTAGTCACATCTGCCCTGTCTCTCTT  650

seq1  GCCATCTTTACAGGTGTGGGGGTTAGGACATGAGTGACTTTGTAGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTACAGGTGTGGGGGTTAGGACATGAGTGACTTTGTAGGAAGC  700

seq1  CATTGTTCTGCATACTTGGTAGAGCGAATATGATTGCTTTTCTTGAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTGCATACTTGGTAGAGCGAATATGATTGCTTTTCTTGAGATT  750

seq1  AAAAGAGAGGAAGCCTGCAGAGAGGGCTCGAGGATTAAGCGCACTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGGAAGCCTGCAGAGAGGGCTCGAGGATTAAGCGCACTTCCTG  800

seq1  CCTTGCAGAGGATTCAGGTTCAGTTCCCAGCACCCACATAGTAGCTCACA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTGCAGAGGATTCA-GTTCAGTTCCCAGCACCCACATAGTAGCTCACA  849

seq1  GTCTTCTGTAACTGCGGTTCCATAAGACGCCTCTCATGATGGCCCCTGCA  900
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GTCTTCTGTAACTGC-GTTCCAT-AGACGCCTCTCATGATGGCCCCTGCA  897

seq1  TACATGTGGTGCACATGTACACATGCAGGCACATGGAATATGCACATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGGTGCACATGTACACATGCAGGCACATGGAATATGCACATAAA  947

seq1  CAATTTTAAGACAAAAGGAGGAAATTTAGAAAAGTGT-GATAACAGAAAA  999
      ||| |||| ||| |||||||||||||||||||||||| ||||||||||||
seq2  CAA-TTTAGGAC-AAAGGAGGAAATTTAGAAAAGTGTGGATAACAGAAAA  995

seq1  CAAAAATTGTCAGTTGTTCTAAGAAAGTGTTGAACCCTCCCTCAGCAA  1047
      | |||||||||||||||||| ||||  || ||||||||||||| ||||
seq2  C-AAAATTGTCAGTTGTTCT-AGAA--TGGTGAACCCTCCCTC-GCAA  1038