BAC Information

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BAC

Clone NameB6Ng01-031L06
Chromosome1 (Build37)
Map Location 101,786,104 - 101,943,944
singlet/doubletdoublet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031L06.bB6Ng01-031L06.g
ACCDH861241DH861242
length950991
definitionDH861241|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L06, 5' end.DH861242|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,786,104 - 101,787,054)(101,942,953 - 101,943,944)
sequence
gaattccacaggccaaaagaaatcatccttgaagttatttcctttaatta
catgaaatgcagtactaaaagctgaacagagcagaaggaggaattccact
tcaaccaaagacaaatgcactccctattaccaactattaaaatccagtgc
ctgtggctttcccaagattaataggatttagattcatttttgagaggttt
gacttttagattcccaaagctagccctatgcttgtgctggtggccattca
tctgcttatttctgctccctgaggacaaagctatttcaaaatatacattc
tctattgccagaaaaaagctagggagggctggtttaataaataagcctct
gagactagaacttcctttgtaccagcatgccttgggtggttctaatggtt
atgaatcagaataaataaagcatttggcttctggcttcctacaacaagta
atttaatgaaagaatattttggaagcttacaaacaatgcataaaaatatg
tgatggttctggacaagacttcaaaagacatgtggggctgagatgattcc
tagcacagaaaactaatttcctgtaaagagtaaatggcaaatatttgagg
aaagcatcagttataattctggagaatctattttctgcttcttttctgga
agtactgcctaaaaatttgaaatagatactttcactccaacttaattcat
ttgcactttgctcttttcattggtgatatcaaagtttacattttatgaat
tatttcagacctgcttctattccaaaatataagtaggaaggaaacaaagt
gtacatatacatacattatgtataaaatgagaaatttctaaatatgtaga
taattttgtgctcctttcctgttttttatagcagtaccatttatcaaact
gaatatgtcttttgtggcattctcttcaaatgaagaagaatgtgtgtgtg

gaattcctctttcatcattttaactgcagagaaatgtaccaattatgttg
cagtttcacaggtctttcactgatttaggctgaccagacactccttattt
gatggctgtgtaggtaattaattatagatttgtggttattgaaaggagat
gattggttcccctttgttgtgtaaataatttttctcagattgaaacattc
cattgtgtaatcctgcaagaaactacttaagcatgaaggtgaacaaataa
agcttcaagacttccctgaaactgactagagtcacttggctactccctgc
ttgagtaacaagctgagacaataacagctgagaatcactctcagaagagt
agagccaagctgcaaatgagacttagaccagagaacagaaaccagccaag
ctgcctgaatgagatttagacaaactaaagagtgtggaaagcacattgtc
caacctattgcactgcctgaaagctgtacagaaggttccaggtttcccag
cttttacccatgagctaccatccacgctggggtaagtcttgatgatgcag
ctatctcagtcatttctgctcctgtaagtaactcttcatgcagattctga
agggctgagttagcagaataaactccattttgtatttaaaactccattct
aaattaacttgcccttagagaaacacggccagtgaagagacttaaaaata
gctggagagattctatcttgtcctccaaactctattttaagttgctgttc
ttggataaagttactgtctaggaagctgtctgctgtccttggggtgatgt
ggccaccacacctgggctctggaaagagatcaacattcctctttacactc
tcatgtaatgccaaggcttagaaacccccactttgcatttttttctttta
tagtccccccttcacatagagctgggggtcactttcttcctcttccatga
agaaggtagcgtgggcctagctagaacttgaattaaaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101786104_101787054
seq2: B6Ng01-031L06.b_45_994

seq1  GAATTCCACAGGCCAAAAGAAATCATCCTTGAAGTTATTTCCTTTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCCAAAAGAAATCATCCTTGAAGTTATTTCCTTTAATTA  50

seq1  CATGAAATGCAGTACTAAAAGCTGAACAGAGCAGAAGGAGGAATTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGCAGTACTAAAAGCTGAACAGAGCAGAAGGAGGAATTCCACT  100

seq1  TCAACCAAAGACAAATGCACTCCCTATTACCAACTATTAAAATCCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAAAGACAAATGCACTCCCTATTACCAACTATTAAAATCCAGTGC  150

seq1  CTGTGGCTTTCCCAAGATTAATAGGATTTAGATTCATTTTTGAGAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTTCCCAAGATTAATAGGATTTAGATTCATTTTTGAGAGGTTT  200

seq1  GACTTTTAGATTCCCAAAGCTAGCCCTATGCTTGTGCTGGTGGCCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAGATTCCCAAAGCTAGCCCTATGCTTGTGCTGGTGGCCATTCA  250

seq1  TCTGCTTATTTCTGCTCCCTGAGGACAAAGCTATTTCAAAATATACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTATTTCTGCTCCCTGAGGACAAAGCTATTTCAAAATATACATTC  300

seq1  TCTATTGCCAGAAAAAAGCTAGGGAGGGCTGGTTTAATAAATAAGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCCAGAAAAAAGCTAGGGAGGGCTGGTTTAATAAATAAGCCTCT  350

seq1  GAGACTAGAACTTCCTTTGTACCAGCATGCCTTGGGTGGTTCTAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGAACTTCCTTTGTACCAGCATGCCTTGGGTGGTTCTAATGGTT  400

seq1  ATGAATCAGAATAAATAAAGCATTTGGCTTCTGGCTTCCTACAACAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAGAATAAATAAAGCATTTGGCTTCTGGCTTCCTACAACAAGTA  450

seq1  ATTTAATGAAAGAATATTTTGGAAGCTTACAAACAATGCATAAAAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAAAGAATATTTTGGAAGCTTACAAACAATGCATAAAAATATG  500

seq1  TGATGGTTCTGGACAAGACTTCAAAAGACATGTGGGGCTGAGATGATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCTGGACAAGACTTCAAAAGACATGTGGGGCTGAGATGATTCC  550

seq1  TAGCACAGAAAACTAATTTCCTGTAAAGAGTAAATGGCAAATATTTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGAAAACTAATTTCCTGTAAAGAGTAAATGGCAAATATTTGAGG  600

seq1  AAAGCATCAGTTATAATTCTGGAGAATCTATTTTCTGCTTCTTTTCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCAGTTATAATTCTGGAGAATCTATTTTCTGCTTCTTTTCTGGA  650

seq1  AGTACTGCCTAAAAATTTGAAATAGATACTTTCACTCCAACTTAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGCCTAAAAATTTGAAATAGATACTTTCACTCCAACTTAATTCAT  700

seq1  TTGCACTTTGCTCTTTTCATTGGTGATATCAAAGTTTACATTTTATGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTTGCTCTTTTCATTGGTGATATCAAAGTTTACATTTTATGAAT  750

seq1  TATTTCAGACCTGCTTCTATTCCAAAATATAAGTAGGAAGGAAACAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGACCTGCTTCTATTCCAAAATATAAGTAGGAAGGAAACAAAGT  800

seq1  GTACATATACATACATTAGGTATAAAATGAGAAATTTCTAAATATGTAGA  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTACATATACATACATTATGTATAAAATGAGAAATTTCTAAATATGTAGA  850

seq1  TAATTTTGTGCTCCTTTCCTGTTTTTTATAGCAGTACCATTTATCAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTGCTCCTTTCCTGTTTTTTATAGCAGTACCATTTATCAAACT  900

seq1  GAATATGTCTTTTGTGGCATTCTCTTCAAAATGAAGAAGAATGTGTGTGT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATATGTCTTTTGTGGCATTCTCTTC-AAATGAAGAAGAATGTGTGTGT  949

seq1  G  951
      |
seq2  G  950

seq1: chr1_101942953_101943944
seq2: B6Ng01-031L06.g_66_1056 (reverse)

seq1  ATGGTTTTAATTCAAGCTCTAGCTTAGGCCACGCTACCTTCTTCATGGAA  50
      |||| ||||||||||| |||||||  | ||||||||||||||||||||||
seq2  ATGG-TTTAATTCAAGTTCTAGCTAGGCCCACGCTACCTTCTTCATGGAA  49

seq1  GAGGAAGGAAAGTGACCCCCAGCTCTATGTGAAGGGGGGACTATAAAAGA  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAA-GAAAGTGACCCCCAGCTCTATGTGAAGGGGGGACTATAAAAGA  98

seq1  AAAAAATGC-AAGTGGGGGTTTCTAAGCCTTGGCATTACATGAGAGTGTA  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGCAAAGTGGGGGTTTCTAAGCCTTGGCATTACATGAGAGTGTA  148

seq1  AAGAGGAATGTTGATCTCTTTCCAGAGCCCAGGTGTGGTGGCCACATCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATGTTGATCTCTTTCCAGAGCCCAGGTGTGGTGGCCACATCAC  198

seq1  CCCAAGGACAGCAGACAGCTTCCTAGACAGTAACTTTATCCAAGAACAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACAGCAGACAGCTTCCTAGACAGTAACTTTATCCAAGAACAGC  248

seq1  AACTTAAAATAGAGTTTGGAGGACAAGATAGAATCTCTCCAGCTATTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATAGAGTTTGGAGGACAAGATAGAATCTCTCCAGCTATTTTT  298

seq1  AAGTCTCTTCACTGGCCGTGTTTCTCTAAGGGCAAGTTAATTTAGAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTCACTGGCCGTGTTTCTCTAAGGGCAAGTTAATTTAGAATGG  348

seq1  AGTTTTAAATACAAAATGGAGTTTATTCTGCTAACTCAGCCCTTCAGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAATACAAAATGGAGTTTATTCTGCTAACTCAGCCCTTCAGAAT  398

seq1  CTGCATGAAGAGTTACTTACAGGAGCAGAAATGACTGAGATAGCTGCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAAGAGTTACTTACAGGAGCAGAAATGACTGAGATAGCTGCATC  448

seq1  ATCAAGACTTACCCCAGCGTGGATGGTAGCTCATGGGTAAAAGCTGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACTTACCCCAGCGTGGATGGTAGCTCATGGGTAAAAGCTGGGAA  498

seq1  ACCTGGAACCTTCTGTACAGCTTTCAGGCAGTGCAATAGGTTGGACAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACCTTCTGTACAGCTTTCAGGCAGTGCAATAGGTTGGACAATG  548

seq1  TGCTTTCCACACTCTTTAGTTTGTCTAAATCTCATTCAGGCAGCTTGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCACACTCTTTAGTTTGTCTAAATCTCATTCAGGCAGCTTGGCT  598

seq1  GGTTTCTGTTCTCTGGTCTAAGTCTCATTTGCAGCTTGGCTCTACTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTTCTCTGGTCTAAGTCTCATTTGCAGCTTGGCTCTACTCTTC  648

seq1  TGAGAGTGATTCTCAGCTGTTATTGTCTCAGCTTGTTACTCAAGCAGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGATTCTCAGCTGTTATTGTCTCAGCTTGTTACTCAAGCAGGGA  698

seq1  GTAGCCAAGTGACTCTAGTCAGTTTCAGGGAAGTCTTGAAGCTTTATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGTGACTCTAGTCAGTTTCAGGGAAGTCTTGAAGCTTTATTTG  748

seq1  TTCACCTTCATGCTTAAGTAGTTTCTTGCAGGATTACACAATGGAATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTCATGCTTAAGTAGTTTCTTGCAGGATTACACAATGGAATGTT  798

seq1  TCAATCTGAGAAAAATTATTTACACAACAAAGGGGAACCAATCATCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGAGAAAAATTATTTACACAACAAAGGGGAACCAATCATCTCCT  848

seq1  TTCAATAACCACAAATCTATAATTAATTACCTACACAGCCATCAAATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAACCACAAATCTATAATTAATTACCTACACAGCCATCAAATAAG  898

seq1  GAGTGTCTGGTCAGCCTAAATCAGTGAAAGACCTGTGAAACTGCAACATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGGTCAGCCTAAATCAGTGAAAGACCTGTGAAACTGCAACATA  948

seq1  ATTGGTACATTTCTCTGCAGTTAAAATGATGAAAGAGGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTACATTTCTCTGCAGTTAAAATGATGAAAGAGGAATTC  991