BAC Information

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BAC

Clone NameB6Ng01-031M19
Chromosome1 (Build37)
Map Location 101,420,761 - 101,569,121
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M19.bB6Ng01-031M19.g
ACCDH861315DH861316
length1,0831,016
definitionDH861315|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M19, 5' end.DH861316|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,420,761 - 101,421,867)(101,568,101 - 101,569,121)
sequence
gaattcaaaaaagaaaagaaaacttagggccaattatttttgataaaaaa
ataaaattagaaaaaatttccactagtttcttctgtgttcttataggata
cccatttttcaaaattaccatcttcaatttgccttctcctgtctctgaag
aacagagaatagtaagtcaatggcttattattctagtgactattctaggc
tctctgtttagaatcagccttttgactttacgttttgttcattttttctt
ctatctacatgtattctatgtacacttcttcctatgtagcatccaaactt
gcaactgttctaaaactgagctctgaatacccaagtagttttgattcttt
gctcattcagctcaagatctatcatacttgttgcttaagaagtgttttta
cattaaaactttaaaaactagtttgctcatgagatcaattttataatatt
aaaattataactttagcaagttttcttctttgtgtctgatgaattgtttt
aattgctcagctttttttccctgctgtagagtctacaaaggaaaatactg
agggtcatatgaccataaacctgggtgtgttaatgtgatggtttgaagta
agtcacctgctgtctgtaatatcaagaaaatggaagaattgaattttcca
tttttttgagttgttgaaaatccagaccagtatgtgggagttgtctaggt
taaaaatttataggtattataattttatctatgggcttgttttaaaatcg
aatagtagtgtaagaaggaaagagagaggacagtgcagctttatttgcaa
aaaggtttactgggtgatctctagtccaagaaaacaaaagtctcaccatg
aacttttacagcctagaatagctatgggtcttataggtcagaaatcacac
agaaagatggatggagattgaaatttccatctcagtctgcacttggacaa
tgctaggtgagtagtgatggccaaagatatcagtaatcataatttcatcc
aggccaccatatctaccggtaagttgcagagtcgaatctaaaaaaaaata
ggcttgaatcaatacttgatttcagtactgtca
gaattcttaactttgattttattcttatctactaaagctaatgaatagag
agaggtgaatagttaagtaatggatcccattgtaattctatttcacaatg
ccctgtttgtgtgaaagaagcaatggcttccactccagtaccactctcat
ttgaggagaaaagtaaatgaccatataggtagaaattgccattgatatgt
taatgtcaggtgtattagtaattaactgactgtttttcccaaataaattc
acccattattttgctttgtttaaattcatcttagtcgtggaaatgttgct
ccttgctaataacacactaacaagtccatgtttgacagaacattggggga
aaaatccttttcttgtgatctatattgtcttccacactaagatgatacaa
gactttccttgcttatattgcatattctgtagtttttgtccctataaacc
aattctttagtttttgaaatttgtgcatattttcagatctttaatgagag
aagatgatgatagtcaagagttatacccagtggggtgctagatcttgaga
tatcagttccctattctttcagtcaagaagaaaataatgagtatgaagtt
gagaggctaagaaaaataaagaggaatatgttcttccaatataatttgga
aagtaactcatatttcacgtattatgctataattatgacattttataata
gttaatactgcttgtataattgacaggatctagagtaactttgggaaaat
atttctcagcatgtctgtgagaaagtttttattgatgaatggaagtggga
agattcaccctagatttgaccagtttattttacaggcaggatgctaggct
gtacaaaatgaagaaaatgattgagcagcagcattcatcactctctgctt
cctgaatggagatgaatgtatcagctgcctctggttttgctgcatgccct
ccccactgtgatgaacttcctcactattatgggattcaccactgggatgg
acttcctactcggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101420761_101421867
seq2: B6Ng01-031M19.b_46_1128

seq1  GAATTCAAAAAAGAAAAGAAAACTTAGGGCCAATTATTTTTGATAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAAGAAAAGAAAACTTAGGGCCAATTATTTTTGATAAAAAA  50

seq1  ATAAAATTAGAAAAAATTTCCACTAGTTTCTTCTGTGTTCTTATAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAGAAAAAATTTCCACTAGTTTCTTCTGTGTTCTTATAGGATA  100

seq1  CCCATTTTTCAAAATTACCATCTTCAATTTGCCTTCTCCTGTCTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTCAAAATTACCATCTTCAATTTGCCTTCTCCTGTCTCTGAAG  150

seq1  AACAGAGAATAGTAAGTCAATGGCTTATTATTCTAGTGACTATTCTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAATAGTAAGTCAATGGCTTATTATTCTAGTGACTATTCTAGGC  200

seq1  TCTCTGTTTAGAATCAGCCTTTTGACTTTACGTTTTGTTCATTTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTAGAATCAGCCTTTTGACTTTACGTTTTGTTCATTTTTTCTT  250

seq1  CTATCTACATGTATTCTATGTACACTTCTTCCTATGTAGCATCCAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTACATGTATTCTATGTACACTTCTTCCTATGTAGCATCCAAACTT  300

seq1  GCAACTGTTCTAAAACTGAGCTCTGAATACCCAAGTAGTTTTGATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTTCTAAAACTGAGCTCTGAATACCCAAGTAGTTTTGATTCTTT  350

seq1  GCTCATTCAGCTCAAGATCTATCATACTTGTTGCTTAAGAAGTGTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCAGCTCAAGATCTATCATACTTGTTGCTTAAGAAGTGTTTTTA  400

seq1  CATTAAAACTTTAAAAACTAGTTTGCTCATGAGATCAATTTTATAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAACTTTAAAAACTAGTTTGCTCATGAGATCAATTTTATAATATT  450

seq1  AAAATTATAACTTTAGCAAGTTTTCTTCTTTGTGTCTGATGAATTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAACTTTAGCAAGTTTTCTTCTTTGTGTCTGATGAATTGTTTT  500

seq1  AATTGCTCAGCTTTTTTTCCCTGCTGTAGAGTCTACAAAGGAAAATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCAGCTTTTTTTCCCTGCTGTAGAGTCTACAAAGGAAAATACTG  550

seq1  AGGGTCATATGACCATAAACCTGGGTGTGTTAATGTGATGGTTTGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATATGACCATAAACCTGGGTGTGTTAATGTGATGGTTTGAAGTA  600

seq1  AGTCACCTGCTGTCTGTAATATCAAGAAAATGGAAGAATTGAATTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTGCTGTCTGTAATATCAAGAAAATGGAAGAATTGAATTTTCCA  650

seq1  TTTTTTTGAGTTGTTGAAAATCCAGACCAGTATGTGGGAGTTGTCTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGTTGTTGAAAATCCAGACCAGTATGTGGGAGTTGTCTAGGT  700

seq1  TAAAAATTTATAGGTATTATAATTTTATCTATGGGCTTGTTTTAAAATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTATAGGTATTATAATTTTATCTATGGGCTTGTTTTAAAATCG  750

seq1  AATAGTAGTGTAAGAAGGAAAGAGAGAGGACAGTGCAGGCTTTATTTGCA  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATAGTAGTGTAAGAAGGAAAGAGAGAGGACAGTGCA-GCTTTATTTGCA  799

seq1  AAAAGGTTTACTGGGTGATCTCTAGTCCAAGAAAACAAAAGTCTCACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTACTGGGTGATCTCTAGTCCAAGAAAACAAAAGTCTCACCAT  849

seq1  GAACTTTTACAGCCTAGAATAGCTATGGGTCTTATAGGTCAGAAAATCAC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACTTTTACAGCCTAGAATAGCTATGGGTCTTATAGGTCAG-AAATCAC  898

seq1  AACAGAAAAGATGGATGGAGATTGAAAATTTTCCATCTCAGGTCTGCACT  950
       |||| |||||||||||||||||||||  ||||||||||| |||||||||
seq2  -ACAG-AAAGATGGATGGAGATTGAAA--TTTCCATCTCA-GTCTGCACT  943

seq1  TGGACAATGCTAGGTGAAGTAGTGATGGCCAAAGGATATCAGGTAATTCA  1000
      |||||||||||||||| |||||||||||||||| ||||||| |||| |||
seq2  TGGACAATGCTAGGTG-AGTAGTGATGGCCAAA-GATATCA-GTAA-TCA  989

seq1  TATATTTCATCCAGGCCACCATATCTAACGGGTAAGGTTGTCAGAGTCAG  1050
      || ||||||||||||||||||||||| || ||||| |||| ||||||| |
seq2  TA-ATTTCATCCAGGCCACCATATCT-ACCGGTAA-GTTG-CAGAGTC-G  1034

seq1  AATCTAGAAAAAAAATTAGGCCTTGAAATCAAATTACTTTGATTTCAGTC  1100
      |||||  |||||||| |||| |||| ||||||  ||| ||||||||||| 
seq2  AATCT--AAAAAAAAATAGG-CTTG-AATCAA--TAC-TTGATTTCAGT-  1076

seq1  ACTGTCA  1107
      |||||||
seq2  ACTGTCA  1083

seq1: chr1_101568101_101569121
seq2: B6Ng01-031M19.g_70_1085 (reverse)

seq1  TATCAGAGTAGGGAAGTTCATCACAGTGGTGAATTCCATAATAGTGAGGA  50
      |||| ||||| |||||| |||| ||||||||||| |||||||||||||||
seq2  TATCCGAGTA-GGAAGTCCATCCCAGTGGTGAATCCCATAATAGTGAGGA  49

seq1  AGTTCATCACAGTGGGGAGGGCATGGCAGCAAAACCAGGAGCAGCTGACT  100
      |||||||||||||||||||||||| |||||||||||||  |||||||| |
seq2  AGTTCATCACAGTGGGGAGGGCAT-GCAGCAAAACCAGAGGCAGCTGA-T  97

seq1  ACATTCATCTCCATTCAGGAAGCAGAGAGTGATGAATGCTGCTGCTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATTCATCTCCATTCAGGAAGCAGAGAGTGATGAATGCTGCTGCTCAA-  146

seq1  TCATTTTCTTCATTTTGTACAGCCTAGCATCCTTGCCTGTAAAATAAACT  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATTTTCTTCATTTTGTACAGCCTAGCATCC-TGCCTGTAAAATAAACT  195

seq1  GGTCAAATCTAGGGTGAATCTTCCCACTTCCATTCATCAATAAAAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATCTAGGGTGAATCTTCCCACTTCCATTCATCAATAAAAACTTT  245

seq1  CTCACAGACATGCTGAGAAATATTTTCCCAAAGTTACTCTAGATCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACATGCTGAGAAATATTTTCCCAAAGTTACTCTAGATCCTGTC  295

seq1  AATTATACAAGCAGTATTAACTATTATAAAATGTCATAATTATAGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACAAGCAGTATTAACTATTATAAAATGTCATAATTATAGCATAA  345

seq1  TACCTGAAATATGAGTTACTTTCCAAATTATATTGGAAGAACATATTCCT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAAATATGAGTTACTTTCCAAATTATATTGGAAGAACATATTCCT  395

seq1  CTTTATTTTTCTTAGCCTCTCAACTTCATACTCATTATTTTCTTCTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTTCTTAGCCTCTCAACTTCATACTCATTATTTTCTTCTTGAC  445

seq1  TGAAAGAATAGGGAACTGATATCTCAAGATCTAGCACCCCACTGGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAATAGGGAACTGATATCTCAAGATCTAGCACCCCACTGGGTATA  495

seq1  ACTCTTGACTATCATCATCTTCTCTCATTAAAGATCTGAAAATATGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGACTATCATCATCTTCTCTCATTAAAGATCTGAAAATATGCACA  545

seq1  AATTTCAAAAACTAAAGAATTGGTTTATAGGGACAAAAACTACAGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAAACTAAAGAATTGGTTTATAGGGACAAAAACTACAGAATAT  595

seq1  GCAATATAAGCAAGGAAAGTCTTGTATCATCTTAGTGTGGAAGACAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAAGCAAGGAAAGTCTTGTATCATCTTAGTGTGGAAGACAATAT  645

seq1  AGATCACAAGAAAAGGATTTTTCCCCCAATGTTCTGTCAAACATGGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACAAGAAAAGGATTTTTCCCCCAATGTTCTGTCAAACATGGACTT  695

seq1  GTTAGTGTGTTATTAGCAAGGAGCAACATTTCCACGACTAAGATGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTGTTATTAGCAAGGAGCAACATTTCCACGACTAAGATGAATTT  745

seq1  AAACAAAGCAAAATAATGGGTGAATTTATTTGGGAAAAACAGTCAGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCAAAATAATGGGTGAATTTATTTGGGAAAAACAGTCAGTTAA  795

seq1  TTACTAATACACCTGACATTAACATATCAATGGCAATTTCTACCTATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATACACCTGACATTAACATATCAATGGCAATTTCTACCTATATG  845

seq1  GTCATTTACTTTTCTCCTCAAATGAGAGTGGTACTGGAGTGGAAGCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTACTTTTCTCCTCAAATGAGAGTGGTACTGGAGTGGAAGCCATT  895

seq1  GCTTCTTTCACACAAACAGGGCATTGTGAAATAGAATTACAATGGGATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCACACAAACAGGGCATTGTGAAATAGAATTACAATGGGATCC  945

seq1  ATTACTTAACTATTCACCTCTCTCTATTCATTAGCTTTAGTAGATAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAACTATTCACCTCTCTCTATTCATTAGCTTTAGTAGATAAGAA  995

seq1  TAAAATCAAAGTTAAGAATTC  1021
      |||||||||||||||||||||
seq2  TAAAATCAAAGTTAAGAATTC  1016