BAC Information

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BAC

Clone NameB6Ng01-031O19
Chromosome1 (Build37)
Map Location 85,105,511 - 85,261,882
singlet/doubletdoublet
Overlap geneA530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O19.bB6Ng01-031O19.g
ACCDH861405DH861406
length1,090775
definitionDH861405|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O19, 5' end.DH861406|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,105,511 - 85,106,621)(85,261,109 - 85,261,882)
sequence
gaattctcatattggttccctgaactgtagagtgagggctatgatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatgtcc
aaccgagtcatgccattataaatttcacctctcctgtgctgaccattact
gggtatgttattataaacattcttttgtctccgctgtccattataataac
tagaatcaccttgtctccggcgattcaatgctgtcacctggcccttgtta
cctcggaatccaactaaacccagttcttcttttccgtatgagataactgt
ctcaaatatctgtgggccttggacccagcctgggcggccctagtaacaca
tttaaaggcagatcttatcagagacaagggacaagagagaatgggactta
cctgctgctgagttcattgtcgcctcctgccatcccctacacagactcca
aggaaccggttcagggtagaccgaacccctctgagtctctgggaagccca
gagagaactccttcaggggcctccaaagaggagaaaaaggaaagtgaaat
tgcttaactatgacaacactgcactaatgcactgccctccacccctagtc
tctgccccagaggggaggagcaaagacagcccaagtccccagaaacctgg
gacgcctgctgccttctaaggaaagaaggtggaagggtctgtttcagcga
agggctcagagctgtctaaggccagctggctggttaggataggaagaaag
tggtcccttaaccctaagcgggggcggtgcctggaaagaccaggaagagt
tagattgtctgcagtctctcagacttggaactgtcctggcaccctagtaa
gtcagaaccagagaagctgggacctgataattgagcagcagagtagaaaa
gtcgggtgtgcttcataaagttttgaagcttctgaagtagctagagcaga
gacgccccaaccccgccacacactcaccacaaagcaagtgcagaggaatc
aagcagagctgcttgctaagggttgacactgacagcgagcaaccaaggct
cagcatttcaccatggtcttgagaacaaggcatctccaga
gaattcatagcatgtgtctgtcttaccttcgctagcctgagtagagattt
aataatgtattgatctttccaaaggatgtgagcataatgcccacttcttt
taattctatggatttctactttaatttcattgaatctttgtcttcattgg
gatgaaatcactcctcataagattgttcatttatgcctcccttagcttcc
gacatatacaaagctgtatgtttccccttagccactgcctttgctgtgtt
tcagatttaataatttttagacttcagtgcttttttagtgtaggagaaag
ggtcacacttttgcttgtcttaccccattaaaaaacattacattcattta
tttattgtatgtgtgcaggtgccacaatgtgtcttttgagatcagaggac
tactttggggagttagctctctcctactaccatgtagttagttcttaggg
gagcaagctcatgtccagagacttggtggcaaggcctgtatcagctgagc
catcctcccagaccctcttttatttacattagttacagtttttaaacgta
ctctgttttataattgtgctattattaaattatccacattttgactcatt
atggacacagagaaatacctaccatgtttgtaaatattttcattttactc
ttttttttttttttggctttcctttctttttatgcccttttggttttagt
aaaacattttatgaatctttcttccttcgtttctttctttctctctctct
ctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85105511_85106621
seq2: B6Ng01-031O19.b_46_1135

seq1  GAATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATGATGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATGATGGTTG  50

seq1  GAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATGTCC  100

seq1  AACCGAGTCATGCCATTATAAATTTCACCTCTCCTGTGCTGACCATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGTCATGCCATTATAAATTTCACCTCTCCTGTGCTGACCATTACT  150

seq1  GGGTATGTTATTATAAACATTCTTTTGTCTCCGCTGTCCATTATAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTTATTATAAACATTCTTTTGTCTCCGCTGTCCATTATAATAAC  200

seq1  TAGAATCACCTTGTCTCCGGCGATTCAATGCTGTCACCTGGCCCTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCACCTTGTCTCCGGCGATTCAATGCTGTCACCTGGCCCTTGTTA  250

seq1  CCTCGGAATCCAACTAAACCCAGTTCTTCTTTTCCGTATGAGATAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAATCCAACTAAACCCAGTTCTTCTTTTCCGTATGAGATAACTGT  300

seq1  CTCAAATATCTGTGGGCCTTGGACCCAGCCTGGGCGGCCCTAGTAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATCTGTGGGCCTTGGACCCAGCCTGGGCGGCCCTAGTAACACA  350

seq1  TTTAAAGGCAGATCTTATCAGAGACAAGGGACAAGAGAGAATGGGACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCAGATCTTATCAGAGACAAGGGACAAGAGAGAATGGGACTTA  400

seq1  CCTGCTGCTGAGTTCATTGTCGCCTCCTGCCATCCCCTACACAGACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTGAGTTCATTGTCGCCTCCTGCCATCCCCTACACAGACTCCA  450

seq1  AGGAACCGGTTCAGGGTAGACCGAACCCCTCTGAGTCTCTGGGAAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCGGTTCAGGGTAGACCGAACCCCTCTGAGTCTCTGGGAAGCCCA  500

seq1  GAGAGAACTCCTTCAGGGGCCTCCAAAGAGGAGAAAAAGGAAAGTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTCCTTCAGGGGCCTCCAAAGAGGAGAAAAAGGAAAGTGAAAT  550

seq1  TGCTTAACTATGACAACACTGCACTAATGCACTGCCCTCCACCCCTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACTATGACAACACTGCACTAATGCACTGCCCTCCACCCCTAGTC  600

seq1  TCTGCCCCAGAGGGGAGGAGCAAAGACAGCCCAAGTCCCCAGAAACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCAGAGGGGAGGAGCAAAGACAGCCCAAGTCCCCAGAAACCTGG  650

seq1  GACGCCTGCTGCCTTCTAAGGAAAGAAGGTGGAAGGGTCTGTTTCAGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTGCTGCCTTCTAAGGAAAGAAGGTGGAAGGGTCTGTTTCAGCGA  700

seq1  AGGGCTCAGAGCTGTCTAAGGCCAGCTGGCTGGTTAGGATAGGAAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGAGCTGTCTAAGGCCAGCTGGCTGGTTAGGATAGGAAGAAAG  750

seq1  TGGTCCCTTAACCCTAAGCGGGGGCGGTGCCTGGAAAGACCAGGAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTTAACCCTAAGCGGGGGCGGTGCCTGGAAAGACCAGGAAGAGT  800

seq1  TAGATTGTCTGCAGTCTCTCAGACTTGGAACTGTCCTGGCACCCTAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTCTGCAGTCTCTCAGACTTGGAACTGTCCTGGCACCCTAGTAA  850

seq1  GTCAGAACCAGAGAAGCTGGGACCTGATAATTGAGCAGCAGAGTAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCAGAACCAGAGAAGCTGGGACCTGATAATTGAGCAGCAGAGTA-GAAA  899

seq1  AGTCGGGTGTGGCTTCATAAAGTTTTTGAAGCTTCTGAAGGTAGCTAGAG  950
      |||||||||| ||||||||||| |||||||||||||||| ||||||||||
seq2  AGTCGGGTGT-GCTTCATAAAG-TTTTGAAGCTTCTGAA-GTAGCTAGAG  946

seq1  CAAGAGACCGCCCCCAACCCCGCCCACACACCTCCAACCAACCAAAGGCA  1000
      | ||||||   ||||||||||| ||||||| |||  ||||  |||| |||
seq2  C-AGAGAC--GCCCCAACCCCG-CCACACA-CTC--ACCA--CAAA-GCA  986

seq1  AGTGCAGAGAATCCAGGCAGAGCTGCTTGCTAAGGTGTGACACTGACAGC  1050
      ||||||||| |  || |||||||||||||||||||  |||||||||||||
seq2  AGTGCAGAGGAATCAAGCAGAGCTGCTTGCTAAGGGTTGACACTGACAGC  1036

seq1  GAGGCAACACAGGGCTTCAGCAATTTCACCATGGTCTTGAGAACAAGAGG  1100
      || ||||| || ||| ||||| |||||||||||||||||||||||  |||
seq2  GA-GCAAC-CAAGGC-TCAGC-ATTTCACCATGGTCTTGAGAACA--AGG  1080

seq1  CATCTCACAGA  1111
      |||||| ||||
seq2  CATCTC-CAGA  1090

seq1: chr1_85261109_85261882
seq2: B6Ng01-031O19.g_68_842 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAACGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAACGAA  50

seq1  GGAAGAAAGAATCATAAAATGTTTTACTAAAACCAAAAGGGCATAAAAAG  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGATTCATAAAATGTTTTACTAAAACCAAAAGGGCATAAAAAG  100

seq1  AAAGGAAAGCC-AAAAAAAAAAAAAGAGTAAAATGAAAATATTTACAAAC  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGCCAAAAAAAAAAAAAAGAGTAAAATGAAAATATTTACAAAC  150

seq1  ATGGTAGGTATTTCTCTGTGTCCATAATGAGTCAAAATGTGGATAATTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGGTATTTCTCTGTGTCCATAATGAGTCAAAATGTGGATAATTTA  200

seq1  ATAATAGCACAATTATAAAACAGAGTACGTTTAAAAACTGTAACTAATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCACAATTATAAAACAGAGTACGTTTAAAAACTGTAACTAATGT  250

seq1  AAATAAAAGAGGGTCTGGGAGGATGGCTCAGCTGATACAGGCCTTGCCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGAGGGTCTGGGAGGATGGCTCAGCTGATACAGGCCTTGCCAC  300

seq1  CAAGTCTCTGGACATGAGCTTGCTCCCCTAAGAACTAACTACATGGTAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTGGACATGAGCTTGCTCCCCTAAGAACTAACTACATGGTAGT  350

seq1  AGGAGAGAGCTAACTCCCCAAAGTAGTCCTCTGATCTCAAAAGACACATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGCTAACTCCCCAAAGTAGTCCTCTGATCTCAAAAGACACATT  400

seq1  GTGGCACCTGCACACATACAATAAATAAATGAATGTAATGTTTTTTAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCTGCACACATACAATAAATAAATGAATGTAATGTTTTTTAATG  450

seq1  GGGTAAGACAAGCAAAAGTGTGACCCTTTCTCCTACACTAAAAAAGCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGACAAGCAAAAGTGTGACCCTTTCTCCTACACTAAAAAAGCACT  500

seq1  GAAGTCTAAAAATTATTAAATCTGAAACACAGCAAAGGCAGTGGCTAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAAAATTATTAAATCTGAAACACAGCAAAGGCAGTGGCTAAGG  550

seq1  GGAAACATACAGCTTTGTATATGTCGGAAGCTAAGGGAGGCATAAATGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATACAGCTTTGTATATGTCGGAAGCTAAGGGAGGCATAAATGAA  600

seq1  CAATCTTATGAGGAGTGATTTCATCCCAATGAAGACAAAGATTCAATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATGAGGAGTGATTTCATCCCAATGAAGACAAAGATTCAATGAA  650

seq1  ATTAAAGTAGAAATCCATAGAATTAAAAGAAGTGGGCATTATGCTCACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTAGAAATCCATAGAATTAAAAGAAGTGGGCATTATGCTCACAT  700

seq1  CCTTTGGAAAGATCAATACATTATTAAATCTCTACTCAGGCTAGCGAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAAGATCAATACATTATTAAATCTCTACTCAGGCTAGCGAAGG  750

seq1  TAAGACAGACACATGCTATGAATTC  774
      |||||||||||||||||||||||||
seq2  TAAGACAGACACATGCTATGAATTC  775