BAC Information

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BAC

Clone NameB6Ng01-031P14
Chromosome1 (Build37)
Map Location 13,018,700 - 13,161,242
singlet/doubletdoublet
Overlap geneLOC383490, Prdm14, Ncoa2
Upstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031P14.bB6Ng01-031P14.g
ACCDH861441DH861442
length1,108884
definitionDH861441|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P14, 5' end.DH861442|Mus musculus domesticus DNA, BAC clone: B6Ng01-031P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,160,121 - 13,161,242)(13,018,700 - 13,019,386)
sequence
gaattccttcacaggtctgtaccaagcaaatggtatgatgctatagtttt
tatttaaaatgttttcaaaagctactttttaatttattagattactcatg
tatttctgtattcggagaacaagttgatttttgactcatgaaaataatta
taacactaaaaagaaaaattaaagaaatgaagtctatttttcattttgta
gaacttaaaaaaaaacaaaaaactttctgactcattttctgccagaaata
gttgaaactaactactgaaattgatgtggctagtttgagcattcaaatag
atgcctaagtgagactctgaagtgtctacaaggcattttaaagaaaggca
ctgatctctctgtcttgcaaagacactgcctaacagagtgcaaggatcag
aagaacatcagtgagatgtaagctccagagctgtagaacacatcttcctt
cagaaacatctaattatcacacttcagcccttccagagcgtgcgcgaaca
ctaagggaagtattaaaatcaatctgcctgagggttataagccatgctga
aatctatctcctatagaaatatttaaacttaggccagacatggtggtgtg
ctcctgcaatcccaacattctagagctgagagagaattgtaaattccagg
tcaaccttacctcaggataagaaaagttaaactgataacaaattaatgat
aaatgcatattccaaaaattgacaaggaataaattcagacaaagcaatgt
ctctaaaagttcctggtgcatcttgaaatgtaacctgagtgagttcagat
agtgcctggagctctgagcctgtagaagcaggctgcccatagcaaagcgc
tgccgagctctcagatttgctgcttctcaagtcaacgttgctgctgctac
tttcctccctccctttctcctttcctgttctggacattgaacccaagcct
cttaaagcctcatgactgaattacgctcctcactcaaataggtagctggt
aagctgtaaatgggagtatcagatgtgaaagtcagtttagacatttcttt
aagaaaacaaattaggccggcgtggtggcgccatgccttattccagcact
tgggaggc
gaattccaggacagccagggctgtacagagaaaccctgtctaaaaaaaaa
aaaaaaaaaaaaacacacagttgggatgattccagagggattgcagagaa
aggggggatattgaacatgatcaaaatacaatgtatgcatgtttgaaatt
ctcaaaaggtcaatttaaaattgtatttaaatattttctgtgggactgtg
aaaggcagcctgatttctggttaagctaggttaaaaccccagaaacccag
cagatagctttgcaagggacagaaggaagtttgacacactcccagacacc
aggatcctgacacgaggccccagctccataattctgtggctatcagtcac
atagggcaatgccccaagctcttggaattctgtctggactcgacccccac
agttacctggctacagccaggtaggcctggcccactataaaaggggtttc
ctgccccctcctctctttctcttactcttgcctctctcttgccctcttgc
tccccgtctctccacattcccttcttccctcactccatgtgaccatggcc
ggcctctacttctctactctctccctctctctgcctttctacagtaaacg
cctgaaaaccatggactgcctcttctcatcagaatccactgtgggggatc
cactgtgctggagcagtggagcaggtcctcctctaaagagccagagctct
ctctcctcctcccccatccccttccccttcaaccccgggccagagcccac
tccgggggccgaccctcggtttttcagttcttccatggcatccattggag
tctgcagtgtccaagagtgagaacctgttgtcctcggcctcttgcagtcg
gggtgtgtggtgcctgagagtctgagcccgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_13160121_13161242
seq2: B6Ng01-031P14.b_46_1153 (reverse)

seq1  GCCTCCCAAGTGCTGGGATTAAAGGCAT-GCGCCACCACGCCCGGCTTAA  49
      |||||||||||||||| ||  ||||||| ||||||||||| ||||| |||
seq2  GCCTCCCAAGTGCTGGAAT--AAGGCATGGCGCCACCACG-CCGGCCTAA  47

seq1  TTTTGTTTTTCTTTAAAAGAAATGTCTTAAACTGACTTTCACATTCTGAT  99
      |||   |||||||  ||||||||||| |||||||||||||||| ||||| 
seq2  TTT--GTTTTCTT--AAAGAAATGTC-TAAACTGACTTTCACA-TCTGA-  90

seq1  TACTCCCATTTACAGCTTTACCAGCTACCTATGTGAGTGA-GAGCGTAAT  148
      |||||||||||||||| ||||||||||||||| ||||||| |||||||||
seq2  TACTCCCATTTACAGC-TTACCAGCTACCTATTTGAGTGAGGAGCGTAAT  139

seq1  TCAGTCATGAGGCTTTTAAGAGGCCTTGGGTTCAATGTCCAGAACAGGAA  198
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TCAGTCATGAGGC-TTTAAGAGG-CTTGGGTTCAATGTCCAGAACAGGAA  187

seq1  AGGAAGAAAGGGAGGGAGGAAAAGTTAGCAGCAGCAACGTTGACTTGAGA  248
      ||| ||||||||||||||||||   |||||||||||||||||||||||||
seq2  AGG-AGAAAGGGAGGGAGGAAA--GTAGCAGCAGCAACGTTGACTTGAGA  234

seq1  AGCAGCAAATCTGAGAGCTCGGCAGCGCTTTGCTATGGGCAGCCTGCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAATCTGAGAGCTCGGCAGCGCTTTGCTATGGGCAGCCTGCTTC  284

seq1  TACAGGCTCAGAGCTCCAGGCACTATCTGAACTCACTCAGGTTACATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTCAGAGCTCCAGGCACTATCTGAACTCACTCAGGTTACATTTC  334

seq1  AAGATGCACCAGGAACTTTTAGAGACATTGCTTTGTCTGAATTTATTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCACCAGGAACTTTTAGAGACATTGCTTTGTCTGAATTTATTCCT  384

seq1  TGTCAATTTTTGGAATATGCATTTATCATTAATTTGTTATCAGTTTAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTTTGGAATATGCATTTATCATTAATTTGTTATCAGTTTAACT  434

seq1  TTTCTTATCCTGAGGTAAGGTTGACCTGGAATTTACAATTCTCTCTCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCCTGAGGTAAGGTTGACCTGGAATTTACAATTCTCTCTCAGC  484

seq1  TCTAGAATGTTGGGATTGCAGGAGCACACCACCATGTCTGGCCTAAGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATGTTGGGATTGCAGGAGCACACCACCATGTCTGGCCTAAGTTT  534

seq1  AAATATTTCTATAGGAGATAGATTTCAGCATGGCTTATAACCCTCAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCTATAGGAGATAGATTTCAGCATGGCTTATAACCCTCAGGCA  584

seq1  GATTGATTTTAATACTTCCCTTAGTGTTCGCGCACGCTCTGGAAGGGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTTTAATACTTCCCTTAGTGTTCGCGCACGCTCTGGAAGGGCTG  634

seq1  AAGTGTGATAATTAGATGTTTCTGAAGGAAGATGTGTTCTACAGCTCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGATAATTAGATGTTTCTGAAGGAAGATGTGTTCTACAGCTCTGG  684

seq1  AGCTTACATCTCACTGATGTTCTTCTGATCCTTGCACTCTGTTAGGCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACATCTCACTGATGTTCTTCTGATCCTTGCACTCTGTTAGGCAGT  734

seq1  GTCTTTGCAAGACAGAGAGATCAGTGCCTTTCTTTAAAATGCCTTGTAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCAAGACAGAGAGATCAGTGCCTTTCTTTAAAATGCCTTGTAGA  784

seq1  CACTTCAGAGTCTCACTTAGGCATCTATTTGAATGCTCAAACTAGCCACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGAGTCTCACTTAGGCATCTATTTGAATGCTCAAACTAGCCACA  834

seq1  TCAATTTCAGTAGTTAGTTTCAACTATTTCTGGCAGAAAATGAGTCAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCAGTAGTTAGTTTCAACTATTTCTGGCAGAAAATGAGTCAGAA  884

seq1  AGTTTTTTGTTTTTTTTTAAGTTCTACAAAATGAAAAATAGACTTCATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTGTTTTTTTTTAAGTTCTACAAAATGAAAAATAGACTTCATTT  934

seq1  CTTTAATTTTTCTTTTTAGTGTTATAATTATTTTCATGAGTCAAAAATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTTTCTTTTTAGTGTTATAATTATTTTCATGAGTCAAAAATCA  984

seq1  ACTTGTTCTCCGAATACAGAAATACATGAGTAATCTAATAAATTAAAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCTCCGAATACAGAAATACATGAGTAATCTAATAAATTAAAAAG  1034

seq1  TAGCTTTTGAAAACATTTTAAATAAAAACTATAGCATCATACCATTTGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTGAAAACATTTTAAATAAAAACTATAGCATCATACCATTTGCT  1084

seq1  TGGTACAGACCTGTGAAGGAATTC  1122
      ||||||||||||||||||||||||
seq2  TGGTACAGACCTGTGAAGGAATTC  1108

seq1: chr1_13018700_13019386
seq2: B6Ng01-031P14.g_69_755

seq1  GAATTCCAGGACAGCCAGGGCTGTACAGAGAAACCCTGTCTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTGTACAGAGAAACCCTGTCTAAAAAAAAA  50

seq1  AAAAAAAAAAAAACACACAGTTGGGATGATTCCAGAGGGATTGCAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACACACAGTTGGGATGATTCCAGAGGGATTGCAGAGAA  100

seq1  AGGGGGGATATTGAACATGATCAAAATACAATGTATGCATGTTTGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGATATTGAACATGATCAAAATACAATGTATGCATGTTTGAAATT  150

seq1  CTCAAAAGGTCAATTTAAAATTGTATTTAAATATTTTCTGTGGGACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGTCAATTTAAAATTGTATTTAAATATTTTCTGTGGGACTGTG  200

seq1  AAAGGCAGCCTGATTTCTGGTTAAGCTAGGTTAAAACCCCAGAAACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCCTGATTTCTGGTTAAGCTAGGTTAAAACCCCAGAAACCCAG  250

seq1  CAGATAGCTTTGCAAGGGACAGAAGGAAGTTTGACACACTCCCAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTTTGCAAGGGACAGAAGGAAGTTTGACACACTCCCAGACACC  300

seq1  AGGATCCTGACACGAGGCCCCAGCTCCATAATTCTGTGGCTATCAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTGACACGAGGCCCCAGCTCCATAATTCTGTGGCTATCAGTCAC  350

seq1  ATAGGGCAATGCCCCAAGCTCTTGGAATTCTGTCTGGACTCGACCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCAATGCCCCAAGCTCTTGGAATTCTGTCTGGACTCGACCCCCAC  400

seq1  AGTTACCTGGCTACAGCCAGGTAGGCCTGGCCCACTATAAAAGGGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTGGCTACAGCCAGGTAGGCCTGGCCCACTATAAAAGGGGTTTC  450

seq1  CTGCCCCCTCCTCTCTTTCTCTTACTCTTGCCTCTCTCTTGCCCTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTCCTCTCTTTCTCTTACTCTTGCCTCTCTCTTGCCCTCTTGC  500

seq1  TCCCCGTCTCTCCACATTCCCTTCTTCCCTCACTCCATGTGACCATGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTCTCTCCACATTCCCTTCTTCCCTCACTCCATGTGACCATGGCC  550

seq1  GGCCTCTACTTCTCTACTCTCTCCCTCTCTCTGCCTTTCTACAGTAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTACTTCTCTACTCTCTCCCTCTCTCTGCCTTTCTACAGTAAACG  600

seq1  CCTGAAAACCATGGACTGCCTCTTCTCATCAGAATCCACTGTGGGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAACCATGGACTGCCTCTTCTCATCAGAATCCACTGTGGGGGATC  650

seq1  CACTGTGCTGGAGCAGTGGAGCAGGTCCTCCTCTAAA  687
      |||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCTGGAGCAGTGGAGCAGGTCCTCCTCTAAA  687