BAC Information

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BAC

Clone NameB6Ng01-032A15
Chromosome1 (Build37)
Map Location 90,179,367 - 90,180,315
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032A15.bB6Ng01-032A15.g
ACCDH861487DH861488
length969942
definitionDH861487|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A15, 5' end.DH861488|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgcgtctcgacctttcgctgatgaagggcttctccacatgga
tttcctctgcattttcctactttaaggagtgggtaggggtaggcttgttt
gccatgatcctatgcggtagagcgttgcttttgctctggatggtctgtaa
acttaaagcccaaacaaaaagggacaagatggtgatagcccaagcacttg
ctgcattagaacacggtgcctcccctgatatatggttatctatacttaag
caataggttgctggtcgctcagctcttgcaccccacgaggctagtctcat
tgcacgggatagagtgagtgtgcttcagcagcccgagagagtttcacggc
taagcactgcagtagaaaggctctgcggcataaaatgagcctattctagg
aagacatgtcatcttgtatgaaggttgagtgtccaagtgtccttccccca
ggaaaaaaacaacacgggagcagaccaagacccctccaggtgacgagcct
gggagaaggttttgtgtaatgcctctatttttgcacactggggatttgac
ctctatctccactctcagtactgggtggcctgttgccttttaaataaaag
aaaaggtggaggtgttagctgaaagaagaggtcattaataagggtagaac
taaatacatttatttcttttcccctacccccacacccccggccccctggc
tgtttcccaggctggctttgaactctacatagcatcctgagttacataca
tgtcacttcaatttgttttattaacaaccctcacaaaggcaaatttagtc
tattctggtctacttggctgataaaacccaagagagatttttttttttta
atttaaacaagccctgatgcaccagctcctattcaattgtgaaagacttt
tacttccctaactagaaagggaagcagaaaacgaactagaaggtggatga
gcaggaagcgaagaaaaga
gaattccatgctcccttcctttctttgtgtaggttagatcatctagtact
ttctgcttcctgctttatgcttctgcagcatccactcctagatctgttta
caggcttacatttacaaggtttgactttcacgtttggcactgactttatt
cacgattgctttaatgcttcattgttatccaacttatggaactacctgct
tggttactctctgtgcgctgaatcgcaatgtgagagttttagactaggtt
tgctctcccaacctactgcattgtgcagcaagtttaagcaggattctggt
cattatgcctgggctcaaggtccccaacctctttcatatggacttttgaa
gaacattccagatgcaaaccatggcgtccattctgagcaaccctcagagt
tatcagtgagtctcatgatgctcttattacatgttttgtcttggataata
tgatgggattgactggtggctccaaaggcaatctacttccatttagtaat
aacagtaacgtgcccactgagcagaatatgctaagggctttggatctatt
gatcttttcattgtcccactaaaggagggagggacttgtgttgagattcc
aattccgcaatctgtaacccaggctactctgggcaatgtgtctgagtctc
agtgatgccattcataaaatggggatactattgcctttgtagagtgatgg
agatcgcaccattgagacagtgcttggtaccagcaagctggttcctaagg
aatgttgactccctaactctgcagcatggggcttgagaacaggcaccagg
gagaggctgatctcagccacactgcaatgattgtcgtgggatggacagga
aggcatgtgtcagccggtttgcagggaagaagagaggggtctgtagtacc
ttttaaactttcatctgaatgcgttcttttctgaggtccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90179367_90180315
seq2: B6Ng01-032A15.g_68_1009

seq1  GAATTCCATGCTCCCTCCCTTTCATTGTATAGGTTAGATCATCTAGTACT  50
      |||||||||||||||| |||||| |||| |||||||||||||||||||||
seq2  GAATTCCATGCTCCCTTCCTTTCTTTGTGTAGGTTAGATCATCTAGTACT  50

seq1  TTCTGCTTCCTGCTTTATGCTTCTGCAGCATCCACTCCTAGATCTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCCTGCTTTATGCTTCTGCAGCATCCACTCCTAGATCTGTTTA  100

seq1  CAGGCTTACGTTTACAAGGTTTGACTTTCACGTTTGGCGCTGACTTTATT  150
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  CAGGCTTACATTTACAAGGTTTGACTTTCACGTTTGGCACTGACTTTATT  150

seq1  CACGATTGCTTTAATGCTTCATTGTTATCCGACTTATGGAACTACCTGCT  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACGATTGCTTTAATGCTTCATTGTTATCCAACTTATGGAACTACCTGCT  200

seq1  TGGTTACTCTCTGTGTGCTGAATCGCAATGTGAGAGTTTTAGACTAGGTT  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGTTACTCTCTGTGCGCTGAATCGCAATGTGAGAGTTTTAGACTAGGTT  250

seq1  TGCTCTCCCAACCTACAGCATTGTGCAGCAAGTTTAAGTAGGATTCTGGT  300
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TGCTCTCCCAACCTACTGCATTGTGCAGCAAGTTTAAGCAGGATTCTGGT  300

seq1  CATTATGCCTGGGCTCAAGGTCCCCAACCCCTTTCATATGGACTTTTGAA  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATTATGCCTGGGCTCAAGGTCCCCAACCTCTTTCATATGGACTTTTGAA  350

seq1  GAACATTCCAGATGCAAACCATGGCGTCCATTCTGAGCAACCCTCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCCAGATGCAAACCATGGCGTCCATTCTGAGCAACCCTCAGAGT  400

seq1  TATCAGTGAGTCTCATGATGCTCTTATTACATGTTTTGTCTTGGATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAGTCTCATGATGCTCTTATTACATGTTTTGTCTTGGATAATA  450

seq1  TGATGGGATTGACTGGTGGCTCCAAAGGCAATTTACTTCCATTTAGTAAT  500
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATGGGATTGACTGGTGGCTCCAAAGGCAATCTACTTCCATTTAGTAAT  500

seq1  AACAGTAACATGCCCACTGAGTAGAATGTGCTAAGGGCTTTGGATCTATT  550
      ||||||||| ||||||||||| ||||| ||||||||||||||||||||||
seq2  AACAGTAACGTGCCCACTGAGCAGAATATGCTAAGGGCTTTGGATCTATT  550

seq1  GATCTTTTCATTGTCTCACTAAAGGAGGGAGGTGACTTGTGTTGAGATCC  600
      ||||||||||||||| |||||||||||||||| ||||||||||||||| |
seq2  GATCTTTTCATTGTCCCACTAAAGGAGGGAGG-GACTTGTGTTGAGATTC  599

seq1  CAATTCCGCAATCTGTAACCCAGGCTACTCTGGGCAATGTGTCTGAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCGCAATCTGTAACCCAGGCTACTCTGGGCAATGTGTCTGAGTCT  649

seq1  CAGTGATGCCATTCGTAAAACGGGGATACTATTGCCTTTGTAGAGTGATG  700
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CAGTGATGCCATTCATAAAATGGGGATACTATTGCCTTTGTAGAGTGATG  699

seq1  GAGATCGCACCATTGAGACAGTGCTTGGTACCAGCAAGCTGGTTCCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCGCACCATTGAGACAGTGCTTGGTACCAGCAAGCTGGTTCCTAAG  749

seq1  GAATGTTGACTCCCTAACTCTGCAGGCATGGGGCTTGAGAACAGGCACCA  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATGTTGACTCCCTAACTCTGCA-GCATGGGGCTTGAGAACAGGCACCA  798

seq1  GGGAGAGGCTGATTCTCAGCCACACTGCAATGATTGTCGTGGGATGGACA  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGCTGA-TCTCAGCCACACTGCAATGATTGTCGTGGGATGGACA  847

seq1  GGAAGGCATGTGTCAAGCCGGTTTGCAGGGAGGAAGAGAGGAGTCTGTAG  900
      |||||||||||||| |||||||||||||||| ||||||||| ||||||| 
seq2  GGAAGGCATGTGTC-AGCCGGTTTGCAGGGAAGAAGAGAGGGGTCTGTA-  895

seq1  GTACCTTTTAAACTTTCCATCTGAAATGCATTCTTTTCTGAGGTCCAAA  949
      |||||||||||||||| |||||| ||||| |||||||||||||||||||
seq2  GTACCTTTTAAACTTT-CATCTG-AATGCGTTCTTTTCTGAGGTCCAAA  942