BAC Information

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BAC

Clone NameB6Ng01-032O07
Chromosome1 (Build37)6 (Build37)
Map Location 12,387,089 - 12,388,27474,108,821 - 74,109,278
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O07.bB6Ng01-032O07.g
ACCDH862098DH862099
length1,156614
definitionDH862098|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O07, 5' end.DH862099|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,387,089 - 12,388,274)(74,108,821 - 74,109,278)
sequence
gaattctcaactgagaaatatcgaatgtcttagaaacacctaaagaaatc
tccaacatccttagtcatcagagaaatgcaaatcaaaacaaatcctagtg
gtgagattctacctcacaccagtcagaatggctaagatcaaaaatatggg
agcatttataacacagatttgttttcaaaactaggatactagtttctgtg
ccagtgattgttacctgttcattctaaactaagattgtgtgaggaatctg
ggagcatggggccattcctggcaatagccaggcatgggaacttaaggagc
tggggagagactgtgactttggagctcaggagaggcacagccagcgtggg
ggagacagactctggctaaaagggaaaatggtggtctcagcctgtccgct
gggctggagacagctggaggccaccaggcggtatctagcctgtgttagtg
tggattggttttttaatatttcatatttgtaatatctttaatatttcata
tttaattccttcattcgcggtgcacatatccacaaatacacacataatta
aaatataatcttaaaaataataataattgaagagctagaacatttcaaag
tcctcatatactaagaattaggcacacacacacacacacacacacacaca
cgcaaacacagaaatttaaagaatctaaaactgtcttgcacagattaaca
aaatgtaatagtgactaagaaggaagaagagtgatttgaattaaatgggc
aggaagttccattacaaattcatttgcaccttcttacaattgctctttgt
ttttgttttattttcttattaaggacccaattctgagtttatgtcaacat
accacaagattcctagtagtgtttggagttttctcttccttccaaaagta
taatggaaactgatctcacagtgagactatcaggcttatcaccactttgt
cagaacaagctgtacttatacttatatattttgtgctttcttggcctttt
cgttgtggaaataaatgttgccaaagaacactatttaactcaagctaatt
tagaaaccacagcagaactttctgaggccacatatttttgcccaattata
cttttcttttccctttgctcttctttcctgaaacacaacaattattgtgt
gagcta
gaattctttgttttgttctgagccccgtttttgaatggagttatttgatt
ttctggagtccatcttcttgagttctttatatatatatattggatattag
tcccatatctgatttaagaaggtaaagatcctttcccaatctgttggtgg
ctaccccagcttgtttcttcagaccatttgattggaaaattgttttccag
cctttcattctgaggtagtgtctgtcttttctcctgagatgggtttcctg
taagcagcaaaatgttgggtcctgtttgtgtagccagtctgttagtctat
gtctttttattggggaattgagtccattgatattaagagatattaaggaa
aagtaattgttgtttcctattatttttgttgttagagttggcattctgtt
cttttggctgtcttcttttaggtttgttgagggattactttcttgctttt
tctagggcgtggtttccatccttgtattgtttttttttttttttttctgt
tattatcctttgaagtgctggattcgtggaaagttaatgtgtgaatttgg
ttttgtcctggaatactctggtttctccatctatggtaattgaaagtttg
gctgggtatattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_12387089_12388274
seq2: B6Ng01-032O07.b_47_1202

seq1  GAATTCTCAACTGAGAAATATCGAATGTCTTAGAAACACCTAAAGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGAAATATCGAATGTCTTAGAAACACCTAAAGAAATC  50

seq1  TCCAACATCCTTAGTCATCAGAGAAATGCAAATCAAAACAAATCCTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATCCTTAGTCATCAGAGAAATGCAAATCAAAACAAATCCTAGTG  100

seq1  GTGAGATTCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATATGGG  150

seq1  AGCATTTATAACACAGATTTGTTTTCAAAACTAGGATACTAGTTTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATAACACAGATTTGTTTTCAAAACTAGGATACTAGTTTCTGTG  200

seq1  CCAGTGATTGTTACCTGTTCATTCTAAACTAAGATTGTGTGAGGAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTGTTACCTGTTCATTCTAAACTAAGATTGTGTGAGGAATCTG  250

seq1  GGAGCATGGGGCCATTCCTGGCAATAGCCAGGCATGGGAACTTAAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGGGCCATTCCTGGCAATAGCCAGGCATGGGAACTTAAGGAGC  300

seq1  TGGGGAGAGACTGTGACTTTGGAGCTCAGGAGAGGCACAGCCAGCGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAGACTGTGACTTTGGAGCTCAGGAGAGGCACAGCCAGCGTGGG  350

seq1  GGAGACAGACTCTGGCTAAAAGGGAAAATGGTGGTCTCAGCCTGTCCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGACTCTGGCTAAAAGGGAAAATGGTGGTCTCAGCCTGTCCGCT  400

seq1  GGGCTGGAGACAGCTGGAGGCCACCAGGCGGTATCTAGCCTGTGTTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGACAGCTGGAGGCCACCAGGCGGTATCTAGCCTGTGTTAGTG  450

seq1  TGGATTGGTTTTTTAATATTTCATATTTGTAATATCTTTAATATTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGTTTTTTAATATTTCATATTTGTAATATCTTTAATATTTCATA  500

seq1  TTTAATTCCTTCATTCGCGGTGCACATATCCACAAATACACACATAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCCTTCATTCGCGGTGCACATATCCACAAATACACACATAATTA  550

seq1  AAATATAATCTTAAAAATAATAATAATTGAAGAGCTAGAACATTTCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATCTTAAAAATAATAATAATTGAAGAGCTAGAACATTTCAAAG  600

seq1  TCCTCATATACTAAGAATTAGGCACACACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATATACTAAGAATTAGGCACACACACACACACACACACACACACA  650

seq1  CGCAAACACAGAAATTTAAAGAATCTAAAACTGTCTTGCACAGATTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAACACAGAAATTTAAAGAATCTAAAACTGTCTTGCACAGATTAACA  700

seq1  AAATGTAATAGTGACTAAGAAGGAAGAAGAGTGATTTGAATTAAATGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATAGTGACTAAGAAGGAAGAAGAGTGATTTGAATTAAATGGGC  750

seq1  AGGAAGTTCCATTACAAATTCATTTGCACCTTCTTACAATTGCTCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTCCATTACAAATTCATTTGCACCTTCTTACAATTGCTCTTTGT  800

seq1  TTTTGTTTTATTTTCTTATTAAGGACCCAATTCTGAGTTTTATGTCAACA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTGTTTTATTTTCTTATTAAGGACCCAATTCTGAG-TTTATGTCAACA  849

seq1  TACCACAAGATTCCTAGTAGTGTTTGGAGTTTTCTCTTCCTTCCAAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAGATTCCTAGTAGTGTTTGGAGTTTTCTCTTCCTTCCAAAAGT  899

seq1  ATAATGGAAACTGATCTCACAGTGAGACTATCAGGCTTATCACCACTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAACTGATCTCACAGTGAGACTATCAGGCTTATCACCACTTTG  949

seq1  TTCAGAACAAAGCTGTACCTATACTTTATTATATTTTGTGCTTTCTTGGC  1000
       ||||||| ||||||||| |||||||   |||||||||||||||||||| 
seq2  -TCAGAAC-AAGCTGTACTTATACTT--ATATATTTTGTGCTTTCTTGG-  994

seq1  CCTTTTCTGTTGT-GAAATAAATGTTTGCCAAAAGAACAACTATTTTAAA  1049
      ||||||| ||||| |||||||||| ||||| ||||||| |||||||  ||
seq2  CCTTTTC-GTTGTGGAAATAAATG-TTGCC-AAAGAAC-ACTATTT--AA  1038

seq1  CATCAAGCATAAAGTTAGAAAACACACAAGCAGAACTGTCTGAGGCACCA  1099
      | ||||||   || ||||||| |||   ||||||||| ||||||||  ||
seq2  C-TCAAGC--TAATTTAGAAACCAC---AGCAGAACTTTCTGAGGCCACA  1082

seq1  TTATTTTTGCCACATATTAGCTTTTTCTTTTCCTTTTGCTCTTTCTTTTC  1149
       |||||||||| || ||||   ||||||||||| ||||||| |||||| |
seq2  -TATTTTTGCC-CA-ATTATACTTTTCTTTTCCCTTTGCTC-TTCTTTCC  1128

seq1  TGAAAAAAACAAACAAACAAATAAAGTGTGTGAGCTA  1186
      ||||| |        ||||| |  | |||||||||||
seq2  TGAAACA-------CAACAATT--ATTGTGTGAGCTA  1156

seq1: chr6_74108821_74109278
seq2: B6Ng01-032O07.g_218_684 (reverse)

seq1  CTACTATACCCGCCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGT  50
      ||| |||||||  ||||||| ||||||||||||||||||||||||| |||
seq2  CTAATATACCCAGCCAAACTTTCAATTACCATAGATGGAGAAACCAGAGT  50

seq1  ATTCCATGACAAAACCAAATTCACACATTATCTTTCCAAGAATCCAGCCC  100
      |||||| ||||||||||||||||||||||| ||||||| ||||||||| |
seq2  ATTCCAGGACAAAACCAAATTCACACATTAACTTTCCACGAATCCAGCAC  100

seq1  TTCAAAGGATAATAACAGAAAAAAAAA---------AATACAAGGGCAGA  141
      |||||||||||||||||||||||||||         |||||||||   ||
seq2  TTCAAAGGATAATAACAGAAAAAAAAAAAAAAAAACAATACAAGGATGGA  150

seq1  AATCACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACCAAAAAG  191
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACCACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACCTAAAAG  200

seq1  AAGACTGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGA  241
      ||||| |||| |||||||||||||||||||||||||||||||||| ||||
seq2  AAGACAGCCAAAAGAACAGAATGCCAACTCTAACAACAAAAATAATAGGA  250

seq1  AGCAACAATTACTTTTCCTTGATATCTCTTAATATCAATGGACTCAATTC  291
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTC  300

seq1  CCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAA  350

seq1  CATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTAC  391
      |||| |||||||||||||||||||||||||||  ||||||||||||||||
seq2  CATTTTGCTGCTTACAGGAAACCCATCTCAGGAGAAAAGACAGACACTAC  400

seq1  CTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAA  441
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAGAATGAAAGGCTGGAAAACAATTTTCCAATCAAATGGTCTGAAGAA  450

seq1  ACAAGCTGGAGTAGCCA  458
      ||||||||| |||||||
seq2  ACAAGCTGGGGTAGCCA  467