BAC Information

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BAC

Clone NameB6Ng01-033E16
Chromosome1 (Build37)
Map Location 98,930,838 - 98,931,927
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430
Downstream geneSlco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033E16.bB6Ng01-033E16.g
ACCDH862388DH862389
length1,1711,072
definitionDH862388|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E16, 5' end.DH862389|Mus musculus domesticus DNA, BAC clone: B6Ng01-033E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctcagaagcacatgaaaaaata
ttcagcatccttaatcatcagagaaatgcaaatcaaaaaaaaaaaaaaaa
aacactgagattccacctcacaccagtcagaatggctaagaacaaaaatt
caggtgacagcagatgctggtgaggatgttgagaaagaggaacactcctc
cattgttggtggggttgcaagcttgtacaaccactctggaaatcagtctg
gtggttcctcagaaaactggatatagtagtaccggaggatcctgcaatac
ctctcctggacatatatccagaagatgttccaaccggtaagaaggacaca
tgctccactatgttcatagcagccttatttataatagccagaagctggaa
agaacccagatgcccctcaacagaggaatggataaagaaaatgtggtaca
tttacacaatggagtactactcagctattaaaaagaatgaatttatgaaa
ttcctagccaaatggatggacctggagggcatcatcctgagtgagataac
acaatcacaaaggaactcacacaatatgtactcactgataagtggatatt
agcccagaaacttaggatacaagatataagatacaatttgctaaacacat
gaaactcaagaagaatgaacaccaaagtgtggacactttgccccttctta
gaattgggaacaaaacacccatggaaggagttacagagacaaagtttgga
gctgtgtcaaaaggatggaccatctagagactgccatatccagggttcca
tcccataatcagcttccaaacgctgacaccattgcacaccctagcaagat
tttgctgaaaggacccagatatagctgtctcttgtgagactatgccaggg
cctagcaaacacagaagtggatgctcacagtcagctaatggatggatcac
agggcccccaatggaggagctagaagaaggtacccaggagctaaaggatc
tgcaaccctataggtgacacattatgactagcagtacccaaggctcctga
ctctagctggctatgttacaaagatggctagtcggcttcactgggagaga
ggccgattgacttgcactttatatgcccatacggggaatgcagggcgaat
gggattggtggtagggagagc
gaattctctggcaccaggttctgaaagacacaatatgctcaacattgaga
aaagtggggaggtgtgattgtcaaaaaaaaaaaaaaaaagaaagaaagaa
aaaaaaaaagcaccgaaacataattctccatccttcctttagtggcagca
atgaaaatgcagacaggatgatctctgatttttaagccagctagatctat
aggagctctagcatatccagtgctacagagagacatcctgtttcaaacaa
acaaacaaacaaacaaacaagcaaacaagccaaaaacaaaaaagaaaaag
gaagaaccaactgaagataattatctttatgggtccaggaatcatgtaag
ctgtgaaggtgacttagccctggattaagtctactattcaaagtagtagc
tcaataaagcattaatttctggagtttgcatgtttttaccatccaaaact
ttaatataaaaattttgaccattatacaaacaaacaaaaaaccaaaaaca
ctaaggaaatcatttttggagtgaaaaaaggaattttacttctactgtat
ttctttgaaattttactttaaaattgtctgggaagaaatagatataaaac
ttcttttaaactctgacctttggtggcacccagcaggtgtgagtgctggt
cctgaggttgtgagagcaggaaagagagctggtctcgcccctgactggct
tctgcactccagatagtgtgcccttcacctctcctcggtagcacagtaga
gctggcactggaggcgaaggcactggtaagggggagcagacctgaggaca
tgaaatcaggacaactgactctgttccttgctgactgatgctgtaggtga
gccagatggggcagcgatggagagctgggccctccaggtgtgggtgcagg
gcagctgactggctgacaaactcagttaccaccaaagcccagatccaggg
tttagtgcacccagcatctacctactatgactgttatagcaaagaagggc
tggtgctacagattcaaagatgcaggatctcttacacaggcacacagaat
gtgagaggagtccatgaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98930838_98931927
seq2: B6Ng01-033E16.g_68_1139

seq1  GAATTCTCTGGCACCAGGTTCTGAAAGACACAATATGCTCAACATTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCACCAGGTTCTGAAAGACACAATATGCTCAACATTGAGA  50

seq1  AAAGTGGGGAGGTGTGATTGTCAAAAAAAAAAAAAAAAAGAAAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGAGGTGTGATTGTCAAAAAAAAAAAAAAAAAGAAAGAAAGAA  100

seq1  AAAAAAAAAGCACCGAAACATAATTCTCCATCCTTCCTTTAGTGGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCACCGAAACATAATTCTCCATCCTTCCTTTAGTGGCAGCA  150

seq1  ATGAAAATGCAGACAGGATGATCTCTGATTTTTAAGCCAGCTAGATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGCAGACAGGATGATCTCTGATTTTTAAGCCAGCTAGATCTAT  200

seq1  AGGAGCTCTAGCATATCCAGTGCTACAGAGAGACATCCTGTTTCAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCTAGCATATCCAGTGCTACAGAGAGACATCCTGTTTCAAACAA  250

seq1  ACAAACAAACAAACAAACAAGCAAACAAGCCAAAAACAAAAAAGAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAGCAAACAAGCCAAAAACAAAAAAGAAAAAG  300

seq1  GAAGAACCAACTGAAGATAATTATCTTTATGGGTCCAGGAATCATGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCAACTGAAGATAATTATCTTTATGGGTCCAGGAATCATGTAAG  350

seq1  CTGTGAAGGTGACTTAGCCCTGGATTAAGTCTACTATTCAAAGTAGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGTGACTTAGCCCTGGATTAAGTCTACTATTCAAAGTAGTAGC  400

seq1  TCAATAAAGCATTAATTTCTGGAGTTTGCATGTTTTTACCATCCAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGCATTAATTTCTGGAGTTTGCATGTTTTTACCATCCAAAACT  450

seq1  TTAATATAAAAATTTTGACCATTATACAAACAAACAAAAAACCAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAAAAATTTTGACCATTATACAAACAAACAAAAAACCAAAAACA  500

seq1  CTAAGGAAATCATTTTTGGAGTGAAAAAAGGAATTTTACTTCTACTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAATCATTTTTGGAGTGAAAAAAGGAATTTTACTTCTACTGTAT  550

seq1  TTCTTTGAAATTTTACTTTAAAATTGTCTGGGAAGAAATAGATATAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAAATTTTACTTTAAAATTGTCTGGGAAGAAATAGATATAAAAC  600

seq1  TTCTTTTAAACTCTGACCTTTGGTGGCACCCAGCAGGTGTGAGTGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAACTCTGACCTTTGGTGGCACCCAGCAGGTGTGAGTGCTGGT  650

seq1  CCTGAGGTTGTGAGAGCAGGAAAGAGAGCTGGTCTCGCCCCTGACTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTGTGAGAGCAGGAAAGAGAGCTGGTCTCGCCCCTGACTGGCT  700

seq1  TCTGCACTCCAGATAGTGTGCCCTTCACCTCTCCTCGGTAGCACAGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTCCAGATAGTGTGCCCTTCACCTCTCCTCGGTAGCACAGTAGA  750

seq1  GCTGGCACTGGAGGCGAAGGCACTGGTAAGGGGGAGCAGACCTGAGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCACTGGAGGCGAAGGCACTGGTAAGGGGGAGCAGACCTGAGGACA  800

seq1  TGAAATCAGGACAACTGACTCTGTTCCTTGCTGACTGATGCTGTAGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGGACAACTGACTCTGTTCCTTGCTGACTGATGCTGTAGGTGA  850

seq1  GCCAGATGGGGCAGCGATGGAGAGCT-GGCCCTCCAGGTGTGGGTGCAGG  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCAGATGGGGCAGCGATGGAGAGCTGGGCCCTCCAGGTGTGGGTGCAGG  900

seq1  GCAGCTGACTGGCTGACAAACTCAGTTACCACCAAAGCCCAGATCCAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGACTGGCTGACAAACTCAGTTACCACCAAAGCCCAGATCCAGGG  950

seq1  TTTTAAGTTGCCACCCCAGCATCTACCCTACCTATGACCTGTTATAGCAA  999
      |||  || |||   ||||||||||| |||| |||||| ||||||||||||
seq2  TTT--AG-TGC--ACCCAGCATCTA-CCTA-CTATGA-CTGTTATAGCAA  992

seq1  AAGAAAGGGCTGGTGCTACAGATCCAAAGATGCAGGATCTCCTTAACACA  1049
      |   ||||||||||||||||||| |||||||||||||||||  | |||||
seq2  A--GAAGGGCTGGTGCTACAGATTCAAAGATGCAGGATCTC--TTACACA  1038

seq1  GGGCAACAACAAGATATGTGAGAGGAGTCCCCATGAAAATC  1090
      ||    ||   ||| |||||||||||||  |||||||||||
seq2  GG----CACACAGA-ATGTGAGAGGAGT--CCATGAAAATC  1072