BAC Information

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BAC

Clone NameB6Ng01-033F12
Chromosome1 (Build37)
Map Location 20,810,894 - 20,963,884
singlet/doubletdoublet
Overlap genePaqr8, Efhc1
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream geneTram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033F12.bB6Ng01-033F12.g
ACCDH862418DH862419
length771901
definitionDH862418|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F12, 5' end.DH862419|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,810,894 - 20,811,660)(20,962,983 - 20,963,884)
sequence
gaattcaaaattctccagtaagccatcactagtattccaagagcaagtta
gaaatggtgtaaagacaaattttattcacggaatcatgctattgccttta
acacagccttgatttgctgtatcttgatctgtaaccttgaagacacagag
atatataattcgtatttctccccactttcacaaggtcatgagatagataa
gcagaaaatcagattgttaaaaaaaaaaaaagcatagttagtatatctaa
gggttccactgctgttcacatgcttgctttgcttgctatctgttggcttt
ctgccttaggcactaatgggccaaggctgatttacaaggtgaaataattg
ctaagaggctgcctggaaagcagcatgcagaaacagtcaaaatcaaggca
ttgcaaagtatacaaagtacttcctttttttctgtctccagcccaaagaa
aacacttggagtgggcgaccctgaagtggagaacagatgagttatgggta
ccggatgccgcttccaagatgatgcccaccatgttatcctgttgaaagag
gggactgatagctctcaaggcattcctcaactcatgagtaacagctcgtg
agtaacattgtctgtgtttgccaagtgattgctggggctataagaccacc
ctgggtcctcatggcaactttattgtggatggccaaggcaaaacaacaat
ttctacttctgaaactccctcgatgggtggacatccctgcagcaaagact
ttagtggacattgccggatcc
gaattccaggctagcctggtctagagattaaccaggacacccaaggctac
acagagaaaccttgcttctaaaagaaaataggaaaaaaattaaaacatct
taacactaacgtgagcttggctataaacgtaactattatagctgcctggt
gactatcagaaggaagttctctggtcatcctgcttgataccttcccactc
ctacaaaggaaagcagtgcccacaactgatacggtatccattctgacagc
tgttgcttagcctttagaagcagcggttatattcagaactgtagatactc
ggtcacttgagaaacgctatgggcattttccacattaatatgcatacact
tactttattttctacaggccttacaagtttctactagtatggatagataa
gttttgtcaacctcattcttcattctgcataaaacacgtattcttttaca
gccctcaaagcatattttgtagaccaaagataaacaatattctaaggaat
taaaatgacaacaaacagcacctcagaaaggttattctaactggctttct
tgtgaacagtataagaaaattgcatttttatgagacaaacactaggtact
gaaaatctttaaaattgtgcagattataaaacctcattattaatgctatg
tttctttggttatcgctagaccatggctactttcatagagtgatgggctc
tgtatttcttctttttaagttttctatcatacagaagtcatccatcttta
tggagttcttcagtgtctacatcttttttcttaccatattgggactttta
tcccgttacctgtttttactggaggggctccttcttggtcacatcaactg
gggtaagtcaggattcccaacttgtctttgaagaactgtcgtgtgaatgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20810894_20811660
seq2: B6Ng01-033F12.b_35_805

seq1  GAATTCAAAATTCTCCAGTAAGCCATCACTAGTATTCCAAGAGCAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTCTCCAGTAAGCCATCACTAGTATTCCAAGAGCAAGTTA  50

seq1  GAAATGGTGTAAAGACAAATTTTATTCACGGAATCATGCTATTGCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTGTAAAGACAAATTTTATTCACGGAATCATGCTATTGCCTTTA  100

seq1  ACACAGCCTTGATTTGCTGTATCTTGATCTGTAACCTTGAAGACACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTTGATTTGCTGTATCTTGATCTGTAACCTTGAAGACACAGAG  150

seq1  ATATATAATTCGTATTTCTCCCCACTTTCACAAGGTCATGAGATAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTCGTATTTCTCCCCACTTTCACAAGGTCATGAGATAGATAA  200

seq1  GCAGAAAATCAGATTGTTAAAAAAAAAAAAAGCATAGTTAGTATATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATCAGATTGTTAAAAAAAAAAAAAGCATAGTTAGTATATCTAA  250

seq1  GGGTTCCACTGCTGTTCACATGCTTGCTTTGCTTGCTATCTGTTGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCACTGCTGTTCACATGCTTGCTTTGCTTGCTATCTGTTGGCTTT  300

seq1  CTGCCTTAGGCACTAATGGGCCAAGGCTGATTTACAAGGTGAAATAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAGGCACTAATGGGCCAAGGCTGATTTACAAGGTGAAATAATTG  350

seq1  CTAAGAGGCTGCCTGGAAAGCAGCATGCAGAAACAGTCAAAATCAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGCTGCCTGGAAAGCAGCATGCAGAAACAGTCAAAATCAAGGCA  400

seq1  TTGCAAAGTATACAAAGTACTTCCTTTTTTTCTGTCTCCAGCCCAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGTATACAAAGTACTTCCTTTTTTTCTGTCTCCAGCCCAAAGAA  450

seq1  AACACTTGGAGTGGGCGACCCTGAAGTGGAGAACAGATGAGTTATGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGAGTGGGCGACCCTGAAGTGGAGAACAGATGAGTTATGGGTA  500

seq1  CCGGATGCCGCTTCCAAGATGATGCCCACCATGTTATCCTGTTGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATGCCGCTTCCAAGATGATGCCCACCATGTTATCCTGTTGAAAGAG  550

seq1  GGGACTGATAGCTCTCAAGGCATTCCTCAACTCATGAGTAACAGCTCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGATAGCTCTCAAGGCATTCCTCAACTCATGAGTAACAGCTCGTG  600

seq1  AGTAACATTGTCTGTGTTTGCCAAGTGATTGCTGGGGCTATAAGACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTGTCTGTGTTTGCCAAGTGATTGCTGGGGCTATAAGACCACC  650

seq1  CTGGGTCCTCATGGCAAC-TTATTGTGGATGGCCAAGGCAAAACAACAAT  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGGGTCCTCATGGCAACTTTATTGTGGATGGCCAAGGCAAAACAACAAT  700

seq1  TTCTACTTCTGAAACT-CCTCGAT-GGTGGACAT-CCTGCAGCAAAGACT  746
      |||||||||||||||| ||||||| ||||||||| |||||||||||||||
seq2  TTCTACTTCTGAAACTCCCTCGATGGGTGGACATCCCTGCAGCAAAGACT  750

seq1  TTAGTGGACATTGCCGGATCC  767
      |||||||||||||||||||||
seq2  TTAGTGGACATTGCCGGATCC  771

seq1: chr1_20962983_20963884
seq2: B6Ng01-033F12.g_64_964 (reverse)

seq1  CCCATTCACACGACAGTTCTACAAAGACAAGTTTGGAATGCCTGACTTAC  50
      |||||||||||||||||||| |||||||||||| ||||| ||||||||||
seq2  CCCATTCACACGACAGTTCTTCAAAGACAAGTTGGGAAT-CCTGACTTAC  49

seq1  CACCAGTTGATGTGACCAAGAAGGAGCCACCTCCAGT-AAAACAGGTAAC  99
      | |||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  C-CCAGTTGATGTGACCAAGAAGGAGCC-CCTCCAGTAAAAACAGGTAAC  97

seq1  GGGATAGAAGTCCCAAATATGGTAAG-AATAAGATGTAGACACTGAAGAA  148
      |||||| ||||||| ||||||||||| || ||||||||||||||||||||
seq2  GGGATAAAAGTCCC-AATATGGTAAGAAAAAAGATGTAGACACTGAAGAA  146

seq1  CTCCATAAAGATGGATGACTTCTGTATGATAG-AAACTTAAAAAGAAGAA  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCCATAAAGATGGATGACTTCTGTATGATAGAAAACTTAAAAAGAAGAA  196

seq1  ATACAGAGCCCATCACTCTATGAAAGTAGCCATGGTCTAGCGATAACCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCCCATCACTCTATGAAAGTAGCCATGGTCTAGCGATAACCAA  246

seq1  AGAAACATAGCATTAATAATGAGGTTTTATAATCTGCACAATTTTAAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATAGCATTAATAATGAGGTTTTATAATCTGCACAATTTTAAAGA  296

seq1  TTTTCAGTACCTAGTGTTTGTCTCATAAAAATGCAATTTTCTTATACTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTACCTAGTGTTTGTCTCATAAAAATGCAATTTTCTTATACTGT  346

seq1  TCACAAGAAAGCCAGTTAGAATAACCTTTCTGAGGTGCTGTTTGTTGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAAAGCCAGTTAGAATAACCTTTCTGAGGTGCTGTTTGTTGTCA  396

seq1  TTTTAATTCCTTAGAATATTGTTTATCTTTGGTCTACAAAATATGCTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCCTTAGAATATTGTTTATCTTTGGTCTACAAAATATGCTTTG  446

seq1  AGGGCTGTAAAAGAATACGTGTTTTATGCAGAATGAAGAATGAGGTTGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTAAAAGAATACGTGTTTTATGCAGAATGAAGAATGAGGTTGAC  496

seq1  AAAACTTATCTATCCATACTAGTAGAAACTTGTAAGGCCTGTAGAAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATCTATCCATACTAGTAGAAACTTGTAAGGCCTGTAGAAAATA  546

seq1  AAGTAAGTGTATGCATATTAATGTGGAAAATGCCCATAGCGTTTCTCAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTGTATGCATATTAATGTGGAAAATGCCCATAGCGTTTCTCAAG  596

seq1  TGACCGAGTATCTACAGTTCTGAATATAACCGCTGCTTCTAAAGGCTAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGAGTATCTACAGTTCTGAATATAACCGCTGCTTCTAAAGGCTAAG  646

seq1  CAACAGCTGTCAGAATGGATACCGTATCAGTTGTGGGCACTGCTTTCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGTCAGAATGGATACCGTATCAGTTGTGGGCACTGCTTTCCTT  696

seq1  TGTAGGAGTGGGAAGGTATCAAGCAGGATGACCAGAGAACTTCCTTCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTGGGAAGGTATCAAGCAGGATGACCAGAGAACTTCCTTCTGA  746

seq1  TAGTCACCAGGCAGCTATAATAGTTACGTTTATAGCCAAGCTCACGTTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCAGGCAGCTATAATAGTTACGTTTATAGCCAAGCTCACGTTAG  796

seq1  TGTTAAGATGTTTTAATTTTTTTCCTATTTTCTTTTAGAAGCAAGGTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGATGTTTTAATTTTTTTCCTATTTTCTTTTAGAAGCAAGGTTTC  846

seq1  TCTGTGTAGCCTTGGGTGTCCTGGTTAATCTCTAGACCAGGCTGGCCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGTGTAGCCTTGGGTGTCCTGGTTAATCTCTAGACCAGGCTAGCCTGG  896

seq1  AATTC  902
      |||||
seq2  AATTC  901