BAC Information

Click to search

BAC

Clone NameB6Ng01-033I10
Chromosome1 (Build37)
Map Location 60,519,554 - 60,520,630
singlet/doubletsinglet
Overlap geneAbi2
Upstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
Downstream geneRaph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I10.bB6Ng01-033I10.g
ACCDH862551DH862552
length1,0681,026
definitionDH862551|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I10, 5' end.DH862552|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatttgctcccaatttcaagtaactaataatactaagaagat
tcaactgtttcatcactcaaagagatatctcactcacacacacacacaca
cacacatcacctttgtctgcctttcctagagacaatgctaaccacaggga
caaaggctacagagaatggaaggatctcttggacaagtactttaagagat
gtatgttaagcagacaggaggtgaaaaagacaagcgtaaggaaccaagtt
aggacaaaggcttagtggcataaaatatcatgagcagagttcacaagacc
aaaatgttttctctatccagctagtgggagatatgtttaaaaattaagct
ggccatattctgggcagtggtaacacaagcctttaatcccagctcagaag
gaagaggaagacagatcactgagtttgagaccagtctggtatacagagag
agccatggctacacagagaaatcctatcccaaatacaaaataaacaaaca
gtgctggaaagttgtggaaagttggctcagctgtttaaagcacttgttgc
ttcgttatagaggacttaacacccacgtggtggctcacaaccatctgtaa
gtctagttccatggatccaaaaacctctatgaccttcacaggttacccag
catgcatgtggtacacatacattcatgttgccaaaacactcagacatgaa
gtaaaggtaaaatgcttaatgaaaatcatagaaaggtgagtgtgggcatg
aaaaagaactcagtgtaaagaacctaagtaaaatattaaggcctagatgg
aatgttagggcgcccaggtaactgttacctggctagcctgccattatagg
aaactttcccatatgtttctgttactaggaaactttcttatgccaagatt
gattccatattctgttctgttctctgcccttggaaatcaatcatgataga
gtcagagaactgtttggtgtagttacccacgattagcttgacccaaacaa
ccaccaacaacagcactgcatgtctgcacctgtgttatagcttttatggt
atagctgcccttggatgt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aggatggaccatgtagagactgccatacccagggatccaccccataatca
gcatccaaacgctgacaccattgcatacacttagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgaagactatgccggggcccagcaaa
cacagagtgattgcccacagtcagctaatggagggatataggcctccaat
ggaggatctaaaaagtaccaggaattaagggatcggcaccctttaggtgg
aatactttagaactaaccgtaccccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60519554_60520630
seq2: B6Ng01-033I10.b_45_1112 (reverse)

seq1  ACATCCCAGGGGCAGCTTATACCATAAAAGCTTATAACACAGGTGCAGAC  50
      |||| ||| ||||||| |||||||||||||| ||||||||||||||||||
seq2  ACAT-CCAAGGGCAGC-TATACCATAAAAGC-TATAACACAGGTGCAGAC  47

seq1  ATGCAGTGCTGTTTGTTGGGTGGTTGGTTTGGGTCCAAGCTTATCGTGGG  100
      ||||||||||| ||||| ||||||| |||||||| |||||| ||||||||
seq2  ATGCAGTGCTG-TTGTT-GGTGGTT-GTTTGGGT-CAAGCTAATCGTGGG  93

seq1  TAACTACACCAAACAGTTCTCCTGACTCTATCATGATTGATTTCCAAGGG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAACTACACCAAACAGTTCT-CTGACTCTATCATGATTGATTTCCAAGGG  142

seq1  CAGAGAACAGAACAGAATATGGAATCAATCTTGGCATTAGAAAGTTTCCT  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAGAACAGAACAGAATATGGAATCAATCTTGGCATAAGAAAGTTTCCT  192

seq1  AGTAACAGAAACATATGGGAAAGTTTCCTTATAATGGCAGGCTAGCCAGG  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTAACAGAAACATATGGGAAAGTTTCC-TATAATGGCAGGCTAGCCAGG  241

seq1  TAACAGTTACCTGGGCGCCCTAACATTCCATCTAGGCCTTAATATTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTACCTGGGCGCCCTAACATTCCATCTAGGCCTTAATATTTTAC  291

seq1  TTAGGTTCTTTACACTGAGTTCTTTTTCATGCCCACACTCACCTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTTTACACTGAGTTCTTTTTCATGCCCACACTCACCTTTCTAT  341

seq1  GATTTTCATTAAGCATTTTACCTTTACTTCATGTCTGAGTGTTTTGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATTAAGCATTTTACCTTTACTTCATGTCTGAGTGTTTTGGCAA  391

seq1  CATGAATGTATGTGTACCACATGCATGCTGGGTAACCTGTGAAGGTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGTATGTGTACCACATGCATGCTGGGTAACCTGTGAAGGTCATA  441

seq1  GAGGTTTTTGGATCCATGGAACTAGACTTACAGATGGTTGTGAGCCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTTGGATCCATGGAACTAGACTTACAGATGGTTGTGAGCCACCA  491

seq1  CGTGGGTGTTAAGTCCTCTATAACGAAGCAACAAGTGCTTTAAACAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTGTTAAGTCCTCTATAACGAAGCAACAAGTGCTTTAAACAGCTG  541

seq1  AGCCAACTTTCCACAACTTTCCAGCACTGTTTGTTTATTTTGTATTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTTTCCACAACTTTCCAGCACTGTTTGTTTATTTTGTATTTGGG  591

seq1  ATAGGATTTCTCTGTGTAGCCATGGCTCTCTCTGTATACCAGACTGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTTCTCTGTGTAGCCATGGCTCTCTCTGTATACCAGACTGGTCT  641

seq1  CAAACTCAGTGATCTGTCTTCCTCTTCCTTCTGAGCTGGGATTAAAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGTGATCTGTCTTCCTCTTCCTTCTGAGCTGGGATTAAAGGCT  691

seq1  TGTGTTACCACTGCCCAGAATATGGCCAGCTTAATTTTTAAACATATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACCACTGCCCAGAATATGGCCAGCTTAATTTTTAAACATATCTC  741

seq1  CCACTAGCTGGATAGAGAAAACATTTTGGTCTTGTGAACTCTGCTCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGCTGGATAGAGAAAACATTTTGGTCTTGTGAACTCTGCTCATGA  791

seq1  TATTTTATGCCACTAAGCCTTTGTCCTAACTTGGTTCCTTACGCTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGCCACTAAGCCTTTGTCCTAACTTGGTTCCTTACGCTTGTCT  841

seq1  TTTTCACCTCCTGTCTGCTTAACATACATCTCTTAAAGTACTTGTCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTCCTGTCTGCTTAACATACATCTCTTAAAGTACTTGTCCAAG  891

seq1  AGATCCTTCCATTCTCTGTAGCCTTTGTCCCTGTGGTTAGCATTGTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTCCATTCTCTGTAGCCTTTGTCCCTGTGGTTAGCATTGTCTCT  941

seq1  AGGAAAGGCAGACAAAGGTGATGTGTGTGTGTGTGTGTGTGTGAGTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCAGACAAAGGTGATGTGTGTGTGTGTGTGTGTGTGAGTGAGA  991

seq1  TATCTCTTTGAGTGATGAAACAGTTGAATCTTCTTAGTATTATTAGTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTTGAGTGATGAAACAGTTGAATCTTCTTAGTATTATTAGTTAC  1041

seq1  TTGAAATTGGGAGCAAATAGAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TTGAAATTGGGAGCAAATAGAGAATTC  1068