BAC Information

Click to search

BAC

Clone NameB6Ng01-033O03
Chromosome1 (Build37)
Map Location 101,424,148 - 101,589,922
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O03.bB6Ng01-033O03.g
ACCDH862808DH862809
length713567
definitionDH862808|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O03, 5' end.DH862809|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,589,212 - 101,589,922)(101,424,148 - 101,424,720)
sequence
gaattctttgtccaacaggaacaagcttagaaaagaaaatgcctggacag
ctaccagcaggccagttacataaggagaccttgactcagatagacaaaga
acatcagtacaccagtgtgtgctatatgaagccctgacttagagacacaa
caacatcagaacaaaggagatgaaaatccaggaaatagtaaaagccaggc
acaaaagtaaaattgaggtgtcattccatttcatgaagtctctagaggat
gtagagtgagggagaaatcagagacgaaatgttgtcagcctgagaagaga
ttgggaggttatgctttgttaggggagtttctgcttggaatggaggagag
attctagaaatgcagcatggttttataaggtgttggatagtcttagtacc
acttgacaattctaaaattctaaatggttagattgccagaacggcagagg
ttctaccacctatattcaacaatgaaaagaaggtcacattttaaaaaaaa
gtagtctaaaaagagagtgacctacaatcatttatgtttgcaaataaagg
gaacaaattacacagaaaaaagcatggaacggtgtgttctgtgaagaggg
aacaagaaaggtagtcaaggctcggtgctttctctaattaacaatgccat
aagttgaaagtgcaggagcagaaaagggtgcatgggagagtttggatagt
tatgggggagggt
agttcctagcagccatattgaatgactcataactttccacatctcaagct
atagggcatcaaaaccctcttgagtacacaatgggactttgcagattcat
gtgtacatacaaacacatatatacacagcattcacatattaaaaatttat
atataaaccgggtgtggtggcactacctttagtcccagcacttgggaggc
agaagcagtccaatttctgagttcgaggccagcttggtctacagagtggg
ttccaggacagccaggactacacagaaaaaccctgtctcaaaaaaaatta
tttatatacataaacataaacataaacataagcatatgcatatacataaa
catacacatacacatatacatatgtgtgtgtgtgtgtatttgtgtgtgta
tttgtgtgtgagcattcaacgttaaaaacaagaaatattctttcaaattt
ctagtcagatatttgtggaattttaaaaaatctcattaatatggaacaac
aatatgaactaaccagtatcccggagctcttgtctctagctgcatatgta
ttaaaagatggcctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101589212_101589922
seq2: B6Ng01-033O03.b_48_759 (reverse)

seq1  CCCT-CCCCATAACTATCCAAACTCTCCCATGCACCCTTTTCTGCTCCTG  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCATAACTATCCAAACTCTCCCATGCACCCTTTTCTGCTCCTG  50

seq1  CACTTTCAACTTATGGCATTGTTAATTAGAGAAAGCACCGAGCCTTGACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAACTTATGGCATTGTTAATTAGAGAAAGCACCGAGCCTTGACT  100

seq1  ACCTTTCTTGTTCCCTCTTCACAGAACACACCGTTCCATGCTTTTTTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTGTTCCCTCTTCACAGAACACACCGTTCCATGCTTTTTTCTG  150

seq1  TGTAATTTGTTCCCTTTATTTGCAAACATAAATGATTGTAGGTCACTCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGTTCCCTTTATTTGCAAACATAAATGATTGTAGGTCACTCTC  200

seq1  TTTTTAGACTACTTTTTTTTAAAATGTGACCTTCTTTTCATTGTTGAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGACTACTTTTTTTTAAAATGTGACCTTCTTTTCATTGTTGAATA  250

seq1  TAGGTGGTAGAACCTCTGCCGTTCTGGCAATCTAACCATTTAGAATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTAGAACCTCTGCCGTTCTGGCAATCTAACCATTTAGAATTTTA  300

seq1  GAATTGTCAAGTGGTACTAAGACTATCCAACACCTTATAAAACCATGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCAAGTGGTACTAAGACTATCCAACACCTTATAAAACCATGCTG  350

seq1  CATTTCTAGAATCTCTCCTCCATTCCAAGCAGAAACTCCCCTAACAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAGAATCTCTCCTCCATTCCAAGCAGAAACTCCCCTAACAAAGC  400

seq1  ATAACCTCCCAATCTCTTCTCAGGCTGACAACATTTCGTCTCTGATTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCCCAATCTCTTCTCAGGCTGACAACATTTCGTCTCTGATTTCT  450

seq1  CCCTCACTCTACATCCTCTAGAGACTTCATGAAATGGAATGACACCTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCTACATCCTCTAGAGACTTCATGAAATGGAATGACACCTCAA  500

seq1  TTTTACTTTTGTGCCTGGCTTTTACTATTTCCTGGATTTTCATCTCCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTGTGCCTGGCTTTTACTATTTCCTGGATTTTCATCTCCTTT  550

seq1  GTTCTGATGTTGTTGTGTCTCTAAGTCAGGGCTTCATATAGCACACACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATGTTGTTGTGTCTCTAAGTCAGGGCTTCATATAGCACACACTG  600

seq1  GTGTACTGATGTTCTTTGTCTATCTGAGTCAAGGTCTCCTTATGTAACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGATGTTCTTTGTCTATCTGAGTCAAGGTCTCCTTATGTAACTG  650

seq1  GCCTGCTGGTAGCTGTCCAGGCATTTTCTTTTCTAAGCTTGTTCCTGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGGTAGCTGTCCAGGCATTTTCTTTTCTAAGCTTGTTCCTGTTG  700

seq1  GACAAAGAATTC  711
      ||||||||||||
seq2  GACAAAGAATTC  712

seq1: chr1_101424148_101424720
seq2: B6Ng01-033O03.g_67_639

seq1  GAATTCAGTTCCTAGCAGCCATATTGAATGACTCATAACTTTCCACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTAGCAGCCATATTGAATGACTCATAACTTTCCACATCT  50

seq1  CAAGCTATAGGGCATCAAAACCCTCTTGAGTACACAATGGGACTTTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATAGGGCATCAAAACCCTCTTGAGTACACAATGGGACTTTGCAG  100

seq1  ATTCATGTGTACATACAAACACATATATACACAGCATTCACATATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTGTACATACAAACACATATATACACAGCATTCACATATTAAAA  150

seq1  ATTTATATATAAACCGGGTGTGGTGGCACTACCTTTAGTCCCAGCACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATATAAACCGGGTGTGGTGGCACTACCTTTAGTCCCAGCACTTG  200

seq1  GGAGGCAGAAGCAGTCCAATTTCTGAGTTCGAGGCCAGCTTGGTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAGCAGTCCAATTTCTGAGTTCGAGGCCAGCTTGGTCTACAG  250

seq1  AGTGGGTTCCAGGACAGCCAGGACTACACAGAAAAACCCTGTCTCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTCCAGGACAGCCAGGACTACACAGAAAAACCCTGTCTCAAAAA  300

seq1  AAATTATTTATATACATAAACATAAACATAAACATAAGCATATGCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTATATACATAAACATAAACATAAACATAAGCATATGCATATA  350

seq1  CATAAACATACACATACACATATACATATGTGTGTGTGTGTGTATTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATACACATACACATATACATATGTGTGTGTGTGTGTATTTGTG  400

seq1  TGTGTATTTGTGTGTGAGCATTCAACGTTAAAAACAAGAAATATTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTGTGTGTGAGCATTCAACGTTAAAAACAAGAAATATTCTTTC  450

seq1  AAATTTCTAGTCAGATATTTGTGGAATTTTAAAAAATCTCATTAATATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTAGTCAGATATTTGTGGAATTTTAAAAAATCTCATTAATATGG  500

seq1  AACAACAATATGAACTAACCAGTATCCCGGAGCTCTTGTCTCTAGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATATGAACTAACCAGTATCCCGGAGCTCTTGTCTCTAGCTGCA  550

seq1  TATGTATCAAAAGATGGCCTAGT  573
      ||||||| |||||||||||||||
seq2  TATGTATTAAAAGATGGCCTAGT  573