BAC Information

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BAC

Clone NameB6Ng01-033O06
Chromosome1 (Build37)
Map Location 163,414,956 - 163,547,445
singlet/doubletdoublet
Overlap geneTnfsf18, EG435650
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4
Downstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O06.bB6Ng01-033O06.g
ACCDH862814DH862815
length881544
definitionDH862814|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O06, 5' end.DH862815|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,546,563 - 163,547,445)(163,414,956 - 163,415,505)
sequence
gaattctaaatttctatcaaggcagccattcctgtaatttttacaatcac
ttatctgtataatacatttaaaatgctttattggtagtaataacaagaaa
taataactgatctagtatttgtgtatatattacatcctagttattttcca
tagaattcccatgaattttatattactaacaacagtataaagtgcttatt
atctctatacttctgatcatgaaactggatcagagatcaaatgttttgcc
tattcattcattagtaaatggtagaactaggcttcatctccaggaaattt
aggggcaaaagctggcacttaaaccccacttaacattacctaacagacta
tcgccattgttcttaacaccactgggttttccagtggattcttaggagca
gcagcacacaacagcagagtgtttgttggagggaacattggtgatgcctt
cagatgcaagtccgagaaggatgctggagcagtggctgtggacaatggaa
aagcacagtgttgggtagaacattccagtctcaggacgagaggacttaga
aatgagggtggcaagtggattggaccttctcactatggctctctgccggg
ttccttccaggagctggtgagtagagctgagagtgaacctgtatgtgccg
gtgatgctgagtgtcctgtgcgcataggcatgtgtgaaagatccagagtc
tatcgcatcagtctagatgttactgtgaacgtatgcactgactgcatccc
agacagacactatcaatgtctaagatagagaaggctgataaatgtgcccg
cgttccgactcaggaatgtttggtttcaacagttttccgttttccttgcc
agaggcaatgtatagtcatgcaaataaaaag
attttgttttcctgaatggcttgtacctctttgagggtgtagcctaagag
ttataacattttcaccataattttttggactatttagaataatatcttgg
tccttaaaaaatctgaggaaaatgaatgtttaaatatattgtcattaaac
ttaaatatattcatacttatcaattagtagagtgtgtgttattgcaatac
ttgcaaattaagtacttaattacttaacagagtagaagcagaattttagg
aatcctaaatagttacgtctctgtacccataaatccatcattgggaagat
ggagaagttaaatccttttcagcctttgcattttatgataggaagacctc
aaaagagcatcctaagaattctgtcctatacacccacactccagactcaa
caactcttcagagttctcagtgtggctggtttcttcagacaagcgaatac
agacaggaaataaacacttaggaatccggctgctttattgttcatgtgcc
atcacagactagtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163546563_163547445
seq2: B6Ng01-033O06.b_45_925 (reverse)

seq1  CTTTTTATTTGCATGACTTTACATTGCCTCTGGCAAGTGAAACGGAAAAC  50
      |||||||||||||||||| ||||||||||||||||||  |||||||||||
seq2  CTTTTTATTTGCATGACTATACATTGCCTCTGGCAAGGAAAACGGAAAAC  50

seq1  TGTTCGAAACCAAAACATTCCTGAGTCGGAACGC-GGCACACTTTATCAG  99
      |||| |||||| |||||||||||||||||||||| |||||| ||||||||
seq2  TGTT-GAAACC-AAACATTCCTGAGTCGGAACGCGGGCACA-TTTATCAG  97

seq1  CCTTCTCTATCTTAGACATTGATAGTGTCTGTCTGGGATGCAGTCAGTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTATCTTAGACATTGATAGTGTCTGTCTGGGATGCAGTCAGTGC  147

seq1  ATACGTTCACAGTAACATCTAGACTGATGCGATAGACTCTGGATCTTTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTCACAGTAACATCTAGACTGATGCGATAGACTCTGGATCTTTCA  197

seq1  CACATGCCTATGCGCACAGGACACTCAGCATCACCGGCACATACAGGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTATGCGCACAGGACACTCAGCATCACCGGCACATACAGGTTC  247

seq1  ACTCTCAGCTCTACTCACCAGCTCCTGGAAGGAACCCGGCAGAGAGCCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCTCTACTCACCAGCTCCTGGAAGGAACCCGGCAGAGAGCCAT  297

seq1  AGTGAGAAGGTCCAATCCACTTGCCACCCTCATTTCTAAGTCCTCTCGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGGTCCAATCCACTTGCCACCCTCATTTCTAAGTCCTCTCGTC  347

seq1  CTGAGACTGGAATGTTCTACCCAACACTGTGCTTTTCCATTGTCCACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTGGAATGTTCTACCCAACACTGTGCTTTTCCATTGTCCACAGC  397

seq1  CACTGCTCCAGCATCCTTCTCGGACTTGCATCTGAAGGCATCACCAATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCAGCATCCTTCTCGGACTTGCATCTGAAGGCATCACCAATGT  447

seq1  TCCCTCCAACAAACACTCTGCTGTTGTGTGCTGCTGCTCCTAAGAATCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACAAACACTCTGCTGTTGTGTGCTGCTGCTCCTAAGAATCCA  497

seq1  CTGGAAAACCCAGTGGTGTTAAGAACAATGGCGATAGTCTGTTAGGTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACCCAGTGGTGTTAAGAACAATGGCGATAGTCTGTTAGGTAAT  547

seq1  GTTAAGTGGGGTTTAAGTGCCAGCTTTTGCCCCTAAATTTCCTGGAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGGGGTTTAAGTGCCAGCTTTTGCCCCTAAATTTCCTGGAGATG  597

seq1  AAGCCTAGTTCTACCATTTACTAATGAATGAATAGGCAAAACATTTGATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGTTCTACCATTTACTAATGAATGAATAGGCAAAACATTTGATC  647

seq1  TCTGATCCAGTTTCATGATCAGAAGTATAGAGATAATAAGCACTTTATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAGTTTCATGATCAGAAGTATAGAGATAATAAGCACTTTATAC  697

seq1  TGTTGTTAGTAATATAAAATTCATGGGAATTCTATGGAAAATAACTAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAGTAATATAAAATTCATGGGAATTCTATGGAAAATAACTAGGA  747

seq1  TGTAATATATACACAAATACTAGATCAGTTATTATTTCTTGTTATTACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATATACACAAATACTAGATCAGTTATTATTTCTTGTTATTACTA  797

seq1  CCAATAAAGCATTTTAAATGTATTATACAGATAAGTGATTGTAAAAATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGCATTTTAAATGTATTATACAGATAAGTGATTGTAAAAATTA  847

seq1  CAGGAATGGCTGCCTTGATAGAAATTTAGAATTC  883
      ||||||||||||||||||||||||||||||||||
seq2  CAGGAATGGCTGCCTTGATAGAAATTTAGAATTC  881

seq1: chr1_163414956_163415505
seq2: B6Ng01-033O06.g_69_618

seq1  GAATTCATTTTGTTTTCCTGAATGGCTTGTACCTCTTTGAGGGTGTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTTTCCTGAATGGCTTGTACCTCTTTGAGGGTGTAGCC  50

seq1  TAAGAGTTATAACATTTTCACCATAATTTTTTGGACTATTTAGAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTATAACATTTTCACCATAATTTTTTGGACTATTTAGAATAATA  100

seq1  TCTTGGTCCTTAAAAAATCTGAGGAAAATGAATGTTTAAATATATTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCTTAAAAAATCTGAGGAAAATGAATGTTTAAATATATTGTCA  150

seq1  TTAAACTTAAATATATTCATACTTATCAATTAGTAGAGTGTGTGTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTAAATATATTCATACTTATCAATTAGTAGAGTGTGTGTTATTG  200

seq1  CAATACTTGCAAATTAAGTACTTAATTACTTAACAGAGTAGAAGCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTGCAAATTAAGTACTTAATTACTTAACAGAGTAGAAGCAGAAT  250

seq1  TTTAGGAATCCTAAATAGTTACGTCTCTGTACCCATAAATCCATCATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAATCCTAAATAGTTACGTCTCTGTACCCATAAATCCATCATTGG  300

seq1  GAAGATGGAGAAGTTAAATCCTTTTCAGCCTTTGCATTTTATGATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGAGAAGTTAAATCCTTTTCAGCCTTTGCATTTTATGATAGGAA  350

seq1  GACCTCAAAAGAGCATCCTAAGAATTCTGTCCTATACACCCACACTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAAAGAGCATCCTAAGAATTCTGTCCTATACACCCACACTCCAG  400

seq1  ACTCAACAACTCTTCAGAGTTCTCAGTGTGGCTGGTTTCTTCAGACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAACTCTTCAGAGTTCTCAGTGTGGCTGGTTTCTTCAGACAAGC  450

seq1  GAATACAGACAGGAAATAAACACTTAGGAATCCGGCTGCTTTATTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGACAGGAAATAAACACTTAGGAATCCGGCTGCTTTATTGTTCA  500

seq1  TGTGCCATCACAGACTAGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATCACAGACTAGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTG  550