BAC Information

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BAC

Clone NameB6Ng01-033O17
Chromosome1 (Build37)
Map Location 69,360,916 - 69,444,546
singlet/doubletdoublet
Overlap geneEG241084
Upstream geneErbb4, LOC667842
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033O17.bB6Ng01-033O17.g
ACCDH862832DH862833
length8811,089
definitionDH862832|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O17, 5' end.DH862833|Mus musculus domesticus DNA, BAC clone: B6Ng01-033O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,443,670 - 69,444,546)(69,360,916 - 69,362,016)
sequence
gaattccagagggtatgttggcaggatttgggaggagtggaagattgttc
cagatgagagacagttcaaagcattctggagatctgagaattcaagtggt
gagagatgacttgtggtttccaggattgactgaagtaaaaaggaatgcag
ggcctgatgggattagcccagaagattttcatgtcttcgtaagtgattac
tcagttgtcacatcatgttgggaaacaggaggaaagcttggaagggtaag
aagcaggatgtaagcatttttgataaacatgcctatttagtgggaaactg
tatcttccgcactacagtttactcatagatcattgaagtgatggtctgaa
attatctggtagaattatgatgaccactgttcttcactgattattgaata
cttactttaatatttatttgatacatgacttacatctattattttatttg
attcctcaaatagcattgtaagtgggtatgaagataagtaacttccattt
catggttacaaagtcacctacaatttgaactgagagttcttttactccag
agttaatgataaacaatggtaaagacacaggtttgaaatattgagggaga
tggtaaaatgatggtgtggtcccagcagtaattcaatgccagaaatacac
tgtctatcattcagcattgcacaaggccgtggctcaaaagccttaaagaa
taatgaatttcattaccctagagaagccaactgtatatgatgtgttcacc
caattaagagtcaattattagaaatggaaatattaatatgtctagacaca
gtagcacagagaactgatgatctatgaggaaggcagtaaagggaccaatt
acagtttgccaggcaaacaaaaggaaagtaa
gaattccacctccctacactaatccctgtctcatggctttgttttatcaa
gactgcaagcaaagcacctgaggtgccatttacaaaaaaaacttaaaacc
aacctaaaaatgaaaatacatttactttgttgagataaaagtagatgttc
tataaatatacaagtttgtgaggtgaattagagaacatatttctattgca
attgtttcgtagtaccacaaaaagccactgaaagttcccataatgtaaaa
acagaagaaactgagaaaggcagaggagtcagcagacgtcaggtaggaga
acagagagctaggaagatcaaggtgctatagaaaagaacagacaaatgac
agaagccttgggaaaaggattcccttatggtatccaaggtaagcttagaa
taaccagtctgagtggtaacccagggacaaagtccagacatattttctgc
aattccttagagccaccaacctgcttaattacctctaaataagttttgtt
tcagggggctcttttttcacataagacttttttcagggtatggggtgctg
ctttttccaagtcacttatgatgcaacaaagatcttgaggtatgtaatta
tcaatatgtaattatcaattctcagtcatcgcataaattaatttatcagt
actgtctgggtatgtggtcactccctgttcttaaacactttgaatgttcc
actacctgtctctctattgcctgtaccttctctggctccaatgaccagac
tttactgactcctcaacagacattctctcagactctgcatgtaactgtat
ggctgtcgtcttctgtatctacacctacactccgagaagttgcatccagg
ctcacatatgtaaatttgagcccagaattaattgcttttctcattgctgt
gactaattgagtcgctgacaaaaacaaccttaaggaagaatagttcattt
tagctcagacttgagatagttaacttcagaagtcctgaaactgacagatt
cactaggcccctcccctccctagagtaacataaaagactgctgagatctt
gactcaagaagcaagcttcagagactgttgagatcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69443670_69444546
seq2: B6Ng01-033O17.b_48_928 (reverse)

seq1  TTACTTTCCTTTTGTTTGCCTGGCAAACTGTAATTGGT-CCTTTACTGCC  49
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTACTTTCCTTTTGTTTGCCTGGCAAACTGTAATTGGTCCCTTTACTGCC  50

seq1  TTCCTCATAGATCATCAGTTCTCTGTGCTACTGTGTCTAGACATATTAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATAGATCATCAGTTCTCTGTGCTACTGTGTCTAGACATATTAAT  100

seq1  ATTTCCATTTCTTATAATTGACTCTT-ATTGGGTGAACACATCATATACA  148
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ATTTCCATTTCTAATAATTGACTCTTAATTGGGTGAACACATCATATACA  150

seq1  GTTGGCTTCTCTAGGGTAATG-AATTCATTATTC-TTAAGGCTTTTGAGC  196
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GTTGGCTTCTCTAGGGTAATGAAATTCATTATTCTTTAAGGCTTTTGAGC  200

seq1  CACGGCCTTGTGCAATGCTGAATGATAGACAGTGTATTTCTGGCATTGAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCTTGTGCAATGCTGAATGATAGACAGTGTATTTCTGGCATTGAA  250

seq1  TTACTGCTGGGACCACACCATCATTTTACCATCTCCCTCAATATTTCAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGGGACCACACCATCATTTTACCATCTCCCTCAATATTTCAAA  300

seq1  CCTGTGTCTTTACCATTGTTTATCATTAACTCTGGAGTAAAAGAACTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTTTACCATTGTTTATCATTAACTCTGGAGTAAAAGAACTCTC  350

seq1  AGTTCAAATTGTAGGTGACTTTGTAACCATGAAATGGAAGTTACTTATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATTGTAGGTGACTTTGTAACCATGAAATGGAAGTTACTTATCT  400

seq1  TCATACCCACTTACAATGCTATTTGAGGAATCAAATAAAATAATAGATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCCACTTACAATGCTATTTGAGGAATCAAATAAAATAATAGATGT  450

seq1  AAGTCATGTATCAAATAAATATTAAAGTAAGTATTCAATAATCAGTGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGTATCAAATAAATATTAAAGTAAGTATTCAATAATCAGTGAAG  500

seq1  AACAGTGGTCATCATAATTCTACCAGATAATTTCAGACCATCACTTCAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGTCATCATAATTCTACCAGATAATTTCAGACCATCACTTCAAT  550

seq1  GATCTATGAGTAAACTGTAGTGCGGAAGATACAGTTTCCCACTAAATAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGAGTAAACTGTAGTGCGGAAGATACAGTTTCCCACTAAATAGG  600

seq1  CATGTTTATCAAAAATGCTTACATCCTGCTTCTTACCCTTCCAAGCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATCAAAAATGCTTACATCCTGCTTCTTACCCTTCCAAGCTTTC  650

seq1  CTCCTGTTTCCCAACATGATGTGACAACTGAGTAATCACTTACGAAGACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTCCCAACATGATGTGACAACTGAGTAATCACTTACGAAGACA  700

seq1  TGAAAATCTTCTGGGCTAATCCCATCAGGCCCTGCATTCCTTTTTACTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTTCTGGGCTAATCCCATCAGGCCCTGCATTCCTTTTTACTTC  750

seq1  AGTCAATCCTGGAAACCACAAGTCATCTCTCACCACTTGAATTCTCAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCCTGGAAACCACAAGTCATCTCTCACCACTTGAATTCTCAGAT  800

seq1  CTCCAGAATGCTTTGAACTGTCTCTCATCTGGAACAATCTTCCACTCCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATGCTTTGAACTGTCTCTCATCTGGAACAATCTTCCACTCCTC  850

seq1  CCAAATCCTGCCAACATACCCTCTGGAATTC  877
      |||||||||||||||||||||||||||||||
seq2  CCAAATCCTGCCAACATACCCTCTGGAATTC  881

seq1: chr1_69360916_69362016
seq2: B6Ng01-033O17.g_69_1157

seq1  GAATTCCACCTCCCTACACTAATCCCTGTCTCATGGCTTTGTTTTATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTCCCTACACTAATCCCTGTCTCATGGCTTTGTTTTATCAA  50

seq1  GACTGCAAGCAAAGCACCTGAGGTGCCATTTACAAAAAAAACTTAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAAGCAAAGCACCTGAGGTGCCATTTACAAAAAAAACTTAAAACC  100

seq1  AACCTAAAAATGAAAATACATTTACTTTGTTGAGATAAAAGTAGATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAAATGAAAATACATTTACTTTGTTGAGATAAAAGTAGATGTTC  150

seq1  TATAAATATACAAGTTTGTGAGGTGAATTAGAGAACATATTTCTATTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATACAAGTTTGTGAGGTGAATTAGAGAACATATTTCTATTGCA  200

seq1  ATTGTTTCGTAGTACCACAAAAAGCCACTGAAAGTTCCCATAATGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCGTAGTACCACAAAAAGCCACTGAAAGTTCCCATAATGTAAAA  250

seq1  ACAGAAGAAACTGAGAAAGGCAGAGGAGTCAGCAGACGTCAGGTAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAACTGAGAAAGGCAGAGGAGTCAGCAGACGTCAGGTAGGAGA  300

seq1  ACAGAGAGCTAGGAAGATCAAGGTGCTATAGAAAAGAACAGACAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCTAGGAAGATCAAGGTGCTATAGAAAAGAACAGACAAATGAC  350

seq1  AGAAGCCTTGGGAAAAGGATTCCCTTATGGTATCCAAGGTAAGCTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTGGGAAAAGGATTCCCTTATGGTATCCAAGGTAAGCTTAGAA  400

seq1  TAACCAGTCTGAGTGGTAACCCAGGGACAAAGTCCAGACATATTTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTCTGAGTGGTAACCCAGGGACAAAGTCCAGACATATTTTCTGC  450

seq1  AATTCCTTAGAGCCACCAACCTGCTTAATTACCTCTAAATAAGTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAGAGCCACCAACCTGCTTAATTACCTCTAAATAAGTTTTGTT  500

seq1  TCAGGGGGCTCTTTTTTCACATAAGACTTTTTTCAGGGTATGGGGTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGCTCTTTTTTCACATAAGACTTTTTTCAGGGTATGGGGTGCTG  550

seq1  CTTTTTCCAAGTCACTTATGATGCAACAAAGATCTTGAGGTATGTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCAAGTCACTTATGATGCAACAAAGATCTTGAGGTATGTAATTA  600

seq1  TCAATATGTAATTATCAATTCTCAGTCATCGCATAAATTAATTTATCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTAATTATCAATTCTCAGTCATCGCATAAATTAATTTATCAGT  650

seq1  ACTGTCTGGGTATGTGGTCACTCCCTGTTCTTAAACACTTTGAATGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGGGTATGTGGTCACTCCCTGTTCTTAAACACTTTGAATGTTCC  700

seq1  ACTACCTGTCTCTCTATTGCCTGTACCTTCTCTGGCTCCAATGACCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGTCTCTCTATTGCCTGTACCTTCTCTGGCTCCAATGACCAGAC  750

seq1  TTTACTGACTCCTCAACAGACATTCTCTCAGACTCTGCATGTAACTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGACTCCTCAACAGACATTCTCTCAGACTCTGCATGTAACTGTAT  800

seq1  GGCTGTCGTCTTCTGTATCTACACCTACACTCCGAGAAGTTGCATCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCGTCTTCTGTATCTACACCTACACTCCGAGAAGTTGCATCCAGG  850

seq1  CTCACATATGTAAATTTGAGCCCAAGAATTAAATTGCTTTTCTCATTGCT  900
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CTCACATATGTAAATTTGAGCCC-AGAATT-AATTGCTTTTCTCATTGCT  898

seq1  GTGACTAATTGAGTCGCTGACAAAAACAACCTTAAGGGAAGAATAGTTCA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGACTAATTGAGTCGCTGACAAAAACAACCTTAA-GGAAGAATAGTTCA  947

seq1  TTTTAGCTCAAGACTTGAGGATAGTTAACTTCAGGAAGTCCCTGAAACTG  1000
      ||||||||| |||||||| |||||||||||||| ||||| ||||||||||
seq2  TTTTAGCTC-AGACTTGA-GATAGTTAACTTCA-GAAGT-CCTGAAACTG  993

seq1  ACCAGATTCACTAGGCCCCT-CCCTCCCTAGAGTAAACAATAAAGACTGC  1049
      | |||||||||||||||||| ||||||||||||| ||||  |||||||||
seq2  A-CAGATTCACTAGGCCCCTCCCCTCCCTAGAGT-AACATAAAAGACTGC  1041

seq1  TGAGAATCTGACTCAGAGAAGCAAAGCTGCAAGGAAGACTG-TGAGATCA  1098
      |||||   ||||||| |||||| ||||| ||    |||||| ||||||||
seq2  TGAGATCTTGACTCA-AGAAGC-AAGCTTCA---GAGACTGTTGAGATCA  1086

seq1  GAG  1101
      |||
seq2  GAG  1089