BAC Information

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BAC

Clone NameB6Ng01-034A21
Chromosome1 (Build37)
Map Location 189,307,638 - 189,420,799
singlet/doubletdoublet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A21.bB6Ng01-034A21.g
ACCDH862926DH862927
length994538
definitionDH862926|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A21, 5' end.DH862927|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,307,638 - 189,308,634)(189,420,256 - 189,420,799)
sequence
ttccatagtctcctattctctgcccattcatggccgtgttaataactatc
tactaccaatagaagcttcaggctttctctgtagctctggctagcctgga
agtagctctaaagcaggctggccagactgatccacctgacctctggaaga
gcagtcagtgctcttaactgctgatccatctctccagccctagaagcctc
tactatgagggttgagagagtgactaatctatggctataacaataagtca
ttggtggtcagttgaagactatgtgtatttagaagcacggtagctgtagg
ttcttgcctggtttctaggatctgtctagccacaggttcttggccccaac
acgtgaggtagttggatgaatttatctattcccatgacctttagagagga
gcaaaatatcgactttatctcatattgaatgaaacaaaacatctatagat
atcagatgtgaagacatttagttcaccatgatctgtgttgtcttttcaca
ctagcaaagagctacacgcactgatgcagggatttcttccttgctgtgtg
tcttagtcagggtttctattcctgcacacacatcatgaccaagaagcaaa
ttgtgggggaaagggtttattcagcttacacttccatactgctgttcatc
accaaaggatgcaggactggaactcaaggaggtcagaaagcaggagctga
tgcagaggccatggagggatgttacctactgccttgcttccactggtttg
ctcagcctgctctcttatagaaccaaaaactatcagcccagagatggtcc
cacccataagaggcttttccccttgatcactaattgagaaaatgccttat
agctgggatctcatggaggcatttctcaactgaagcgctttctctgtgat
tactccagcctggtgtcagttgacataaaactagccagtacactgttgac
tgcagtacggatggttctagtcatctactgccacctgtctgcat
tcttcattggacagcctgattctttattgataagattttatcttctactt
gtgtatcatcaaaacctagtatagggacatggccatggtgtctgctcaga
tcattgtgggtgttgtaaagcttctcgagtgaatccaaagtcaggctgtg
gtgagacttgtttgtcatcctagcacttagagagctgaggcaggagaatt
gagagtctgtgggctgctggggctgcatctcaatactgtgtttttaaaaa
tgcatataaataagtgaacagtaaagccatgtcataaataaaaaactgac
aaagataaaataaaactgagcaaatatcggtaattgactttaatttttaa
aaaagaaagcaagaaggaaggtgacagaactcatctggtaaaggtttttc
tgagtaagcctggcaggcagcctggcttcccttcccctgagtccacgtgg
tagaaggaaaggactgacttcaacaagttgtctcctgacctccatgagtc
tctctctctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189307638_189308634
seq2: B6Ng01-034A21.b_53_1046

seq1  TTCCATAGTCTCCTATTCTCTGCCCATTCATGGCCGTGTTAATAACTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGTCTCCTATTCTCTGCCCATTCATGGCCGTGTTAATAACTATC  50

seq1  TACTACCAATAGAAGCTTCAGGCTTTCTCTGTAGCTCTGGCTAGCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCAATAGAAGCTTCAGGCTTTCTCTGTAGCTCTGGCTAGCCTGGA  100

seq1  AGTAGCTCTAAAGCAGGCTGGCCAGACTGATCCACCTGACCTCTGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCTAAAGCAGGCTGGCCAGACTGATCCACCTGACCTCTGGAAGA  150

seq1  GCAGTCAGTGCTCTTAACTGCTGATCCATCTCTCCAGCCCTAGAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTTAACTGCTGATCCATCTCTCCAGCCCTAGAAGCCTC  200

seq1  TACTATGAGGGTTGAGAGAGTGACTAATCTATGGCTATAACAATAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAGGGTTGAGAGAGTGACTAATCTATGGCTATAACAATAAGTCA  250

seq1  TTGGTGGTCAGTTGAAGACTATGTGTATTTAGAAGCACGGTAGCTGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTCAGTTGAAGACTATGTGTATTTAGAAGCACGGTAGCTGTAGG  300

seq1  TTCTTGCCTGGTTTCTAGGATCTGTCTAGCCACAGGTTCTTGGCCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTGGTTTCTAGGATCTGTCTAGCCACAGGTTCTTGGCCCCAAC  350

seq1  ACGTGAGGTAGTTGGATGAATTTATCTATTCCCATGACCTTTAGAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGGTAGTTGGATGAATTTATCTATTCCCATGACCTTTAGAGAGGA  400

seq1  GCAAAATATCGACTTTATCTCATATTGAATGAAACAAAACATCTATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATATCGACTTTATCTCATATTGAATGAAACAAAACATCTATAGAT  450

seq1  ATCAGATGTGAAGACATTTAGTTCACCATGATCTGTGTTGTCTTTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGTGAAGACATTTAGTTCACCATGATCTGTGTTGTCTTTTCACA  500

seq1  CTAGCAAAGAGCTACACGCACTGATGCAGGGATTTCTTCCTTGCTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAAGAGCTACACGCACTGATGCAGGGATTTCTTCCTTGCTGTGTG  550

seq1  TCTTAGTCAGGGTTTCTATTCCTGCACACACATCATGACCAAGAAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCAGGGTTTCTATTCCTGCACACACATCATGACCAAGAAGCAAA  600

seq1  TTGTGGGGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATC  650

seq1  ACCAAAGGATGCAGGACTGGAACTCAAGGAGGTCAGAAAGCAGGAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGATGCAGGACTGGAACTCAAGGAGGTCAGAAAGCAGGAGCTGA  700

seq1  TGCAGAGGCCATGGAGGGATGTTACCTACTGCCTTGCTTCCACTGGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCCATGGAGGGATGTTACCTACTGCCTTGCTTCCACTGGTTTG  750

seq1  CTCAGCCTGCTCTCTTATAGAACCAAAAACTATCAGCCCAGAGATGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTGCTCTCTTATAGAACCAAAAACTATCAGCCCAGAGATGGTCC  800

seq1  CACCCATAAGAGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTA  850
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  CACCCATAAGAGG-CTTTTCCCCTTGATCACTAATTGAGAAAATGCCTTA  849

seq1  TAGCT-GGATCTCATGGAGGCATTTTCTCAACTGAAGCGCCTTTCTCTGT  899
      ||||| |||||||||||||||| |||||||||||||||| ||||||||||
seq2  TAGCTGGGATCTCATGGAGGCA-TTTCTCAACTGAAGCG-CTTTCTCTGT  897

seq1  GATAACTCCAGCCT-GTGTCAAGTTGACATAAAACTAGCCAGTACACTG-  947
      ||| |||||||||| ||||| |||||||||||||||||||||||||||| 
seq2  GATTACTCCAGCCTGGTGTC-AGTTGACATAAAACTAGCCAGTACACTGT  946

seq1  TGACTGCCAGTACGGATGGTTCTTAAGTC-TCTACTGCACACTGTCTGCA  996
      |||||| ||||||||||||||||  |||| ||||||||   |||||||||
seq2  TGACTG-CAGTACGGATGGTTCT--AGTCATCTACTGCCACCTGTCTGCA  993

seq1  T  997
      |
seq2  T  994

seq1: chr1_189420256_189420799
seq2: B6Ng01-034A21.g_66_609 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCATGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCATGGAGG  50

seq1  TCAGGAGACAACTTGTTGAAGTCAGTCCTTTCCTTCTACCACGTGGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGACAACTTGTTGAAGTCAGTCCTTTCCTTCTACCACGTGGACTC  100

seq1  AGGGGAAGGGAAGCCAGGCTGCCTGCCAGGCTTACTCAGAAAAACCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGGGAAGCCAGGCTGCCTGCCAGGCTTACTCAGAAAAACCTTTA  150

seq1  CCAGATGAGTTCTGTCACCTTCCTTCTTGCTTTCTTTTTTAAAAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAGTTCTGTCACCTTCCTTCTTGCTTTCTTTTTTAAAAATTAAA  200

seq1  GTCAATTACCGATATTTGCTCAGTTTTATTTTATCTTTGTCAGTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTACCGATATTTGCTCAGTTTTATTTTATCTTTGTCAGTTTTTTA  250

seq1  TTTATGACATGGCTTTACTGTTCACTTATTTATATGCATTTTTAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACATGGCTTTACTGTTCACTTATTTATATGCATTTTTAAAAACA  300

seq1  CAGTATTGAGATGCAGCCCCAGCAGCCCACAGACTCTCAATTCTCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGAGATGCAGCCCCAGCAGCCCACAGACTCTCAATTCTCCTGCC  350

seq1  TCAGCTCTCTAAGTGCTAGGATGACAAACAAGTCTCACCACAGCCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCTAAGTGCTAGGATGACAAACAAGTCTCACCACAGCCTGACT  400

seq1  TTGGATTCACTCGAGAAGCTTTACAACACCCACAATGATCTGAGCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTCACTCGAGAAGCTTTACAACACCCACAATGATCTGAGCAGACA  450

seq1  CCATGGCCATGTCCCTATACTAGGTTTTGATGATACACAAGTAGAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCATGTCCCTATACTAGGTTTTGATGATACACAAGTAGAAGATA  500

seq1  AAATCTTATCAATAAAGAATCAGGCTGTCCAATGAAGAGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATCAATAAAGAATCAGGCTGTCCAATGAAGAGAATTC  544