BAC Information

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BAC

Clone NameB6Ng01-034B09
Chromosome1 (Build37)
Map Location 53,068,185 - 53,228,496
singlet/doubletdoublet
Overlap geneGdf8, 1700019A02Rik
Upstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
Downstream genePms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B09.bB6Ng01-034B09.g
ACCDH862950DH862951
length1,025884
definitionDH862950|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B09, 5' end.DH862951|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,227,461 - 53,228,496)(53,068,185 - 53,068,951)
sequence
gaattcccttttgcacatcaccctctttgcctcttcctttataatctgct
atcctgaaatcattatctaaatttccctgtcaccttaacactttccactt
taagttaactcaacacttaacttaaactgaatgtctttattcagattatt
tagatattcagattaatttaaggaggtttaaattttttatatatttatat
atttataaatagatatttgtttatatattgctatatatatgcagaaaaac
ttaaaagcaaaaaaaggaaagcaccatcaaaattcctacccttacacaat
ttctttataactggacatttttctgtgagcctgaatgatactcataaatt
agcattgtatcaaatattctttggcttttaagtaagtgtagattagagtc
aatatttaatcatagcctttcattatatagatttgatataacttaatagc
attaagttgcttctttgtaaaatggagataacaaactcgtaagtttattg
aaaatattaaataccaatattaaaatgtaaatatgaagaaatgcatcaaa
catttaacaccatggtaaaccaatggcatttatcagtaaatgagttctta
ctgttaactgctttacaattaacattggtcagttaatatatctgttttta
gaaccatggtttctatagtttttgctacccaatagttttaaagatctgat
agacagtcgtttttaaccttcctagtgctgtgaccctttgatgcagatcc
tcattttgtgttggaaacccccaaccataaaattattttcatcactactt
cataactgtaattttgctactattatgaatcataatttttgaaagtagag
gtttgcagaaggagttgtgacccacaggttcagaaccactgtggtagggc
aaggtttatcatttctatttctgtaatacccacgaagatatttgtcttta
tgttgaaatttcagggtcttggttatttttctggccaagtattagtatgg
gagccaggcatggtcttgtttatcc
gaattcagttgatgccatggaaatttttggcaattctgagcaccatttca
tactgtgagatttttatctgaaacactgcaagattttaaagagtaatttt
ccatttcctccagtgcagcactaccttcctgggctaatatgcccttccta
tgtgacctctgtgggaccagacagactggctttgggcttttatcatgttt
tctccaggtctcatcaagccctatccactggtttaaaacatgtagttctt
ggtgaagatctttagatgttcagggacaaggatgaagcagggacagagag
aatggccaaccaatgactggcccaaattgatacccatcccatgggcaagc
accaatccctatcactagtagtgatactctgttatgcttgtagacaggag
tctgtcttttgagaggctccatccagcagctaaccagaacagatgcagag
aaccagaggcaaacactggagggagcttggggagccttgtcgaagagttg
agggaatgactgggaaacctgaagaggatcgagactccacaggaagatca
acagaatcaactaatctggacccttggggactcccagagactgaactatc
aaccaaagagcaagcatggctggtacaagttgcacatatgtagcagatgt
acagcttggtcttcatgtgagtcccccaacaactagagtggggggatgtc
cctgaatctgttgcctatttgtcccctaactgagcccccttgtctgacct
caatgggagaggatgctcctagttctgccgtaacttgatgtgccaggatg
gggtgatacccaggggatccccccttctcagaggaaaatgggagggagga
ttatggagaggaccgatggggggcttggaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53227461_53228496
seq2: B6Ng01-034B09.b_44_1068 (reverse)

seq1  GGATAATCAAGACCAATGCCTGGCTTCACATAACTATATAACTTAGCCAG  50
      |||||| ||||||| ||||||||| || ||| |||| || |||| |||||
seq2  GGATAAACAAGACC-ATGCCTGGC-TCCCAT-ACTA-AT-ACTTGGCCAG  45

seq1  AAAAATAACCAAGGACACATGAAAATTTCAAACATAAAGACAAATATACT  100
      |||||||||||| ||| | || ||||||| ||||||||||||||||| ||
seq2  AAAAATAACCAA-GAC-CCTG-AAATTTC-AACATAAAGACAAATAT-CT  90

seq1  TCGTGGGTATTACAGAAATAGAAATGATAAAACCTTGCCCTACCACAGTG  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCGTGGGTATTACAGAAATAGAAATGAT-AAACCTTGCCCTACCACAGTG  139

seq1  GTTCTGAACCTGTGGGTCACAACTCCTTCTGCAAACCTCTACTTTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAACCTGTGGGTCACAACTCCTTCTGCAAACCTCTACTTTCAAAA  189

seq1  ATTATGATTCATAATAGTAGCAAAATTACAGTTATGAAGTAGTGATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATTCATAATAGTAGCAAAATTACAGTTATGAAGTAGTGATGAAA  239

seq1  ATAATTTTATGGTTGGGGGTTTCCAACACAAAATGAGGATCTGCATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATGGTTGGGGGTTTCCAACACAAAATGAGGATCTGCATCAAA  289

seq1  GGGTCACAGCACTAGGAAGGTTAAAAACGACTGTCTATCAGATCTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACAGCACTAGGAAGGTTAAAAACGACTGTCTATCAGATCTTTAAA  339

seq1  ACTATTGGGTAGCAAAAACTATAGAAACCATGGTTCTAAAAACAGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGGTAGCAAAAACTATAGAAACCATGGTTCTAAAAACAGATATA  389

seq1  TTAACTGACCAATGTTAATTGTAAAGCAGTTAACAGTAAGAACTCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGACCAATGTTAATTGTAAAGCAGTTAACAGTAAGAACTCATTTA  439

seq1  CTGATAAATGCCATTGGTTTACCATGGTGTTAAATGTTTGATGCATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATGCCATTGGTTTACCATGGTGTTAAATGTTTGATGCATTTCT  489

seq1  TCATATTTACATTTTAATATTGGTATTTAATATTTTCAATAAACTTACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTACATTTTAATATTGGTATTTAATATTTTCAATAAACTTACGA  539

seq1  GTTTGTTATCTCCATTTTACAAAGAAGCAACTTAATGCTATTAAGTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTATCTCCATTTTACAAAGAAGCAACTTAATGCTATTAAGTTATA  589

seq1  TCAAATCTATATAATGAAAGGCTATGATTAAATATTGACTCTAATCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTATATAATGAAAGGCTATGATTAAATATTGACTCTAATCTACA  639

seq1  CTTACTTAAAAGCCAAAGAATATTTGATACAATGCTAATTTATGAGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTAAAAGCCAAAGAATATTTGATACAATGCTAATTTATGAGTATC  689

seq1  ATTCAGGCTCACAGAAAAATGTCCAGTTATAAAGAAATTGTGTAAGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGCTCACAGAAAAATGTCCAGTTATAAAGAAATTGTGTAAGGGTA  739

seq1  GGAATTTTGATGGTGCTTTCCTTTTTTTGCTTTTAAGTTTTTCTGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTGATGGTGCTTTCCTTTTTTTGCTTTTAAGTTTTTCTGCATAT  789

seq1  ATATAGCAATATATAAACAAATATCTATTTATAAATATATAAATATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAATATATAAACAAATATCTATTTATAAATATATAAATATATAA  839

seq1  AAAATTTAAACCTCCTTAAATTAATCTGAATATCTAAATAATCTGAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAACCTCCTTAAATTAATCTGAATATCTAAATAATCTGAATAA  889

seq1  AGACATTCAGTTTAAGTTAAGTGTTGAGTTAACTTAAAGTGGAAAGTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCAGTTTAAGTTAAGTGTTGAGTTAACTTAAAGTGGAAAGTGTT  939

seq1  AAGGTGACAGGGAAATTTAGATAATGATTTCAGGATAGCAGATTATAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACAGGGAAATTTAGATAATGATTTCAGGATAGCAGATTATAAAG  989

seq1  GAAGAGGCAAAGAGGGTGATGTGCAAAAGGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCAAAGAGGGTGATGTGCAAAAGGGAATTC  1025

seq1: chr1_53068185_53068951
seq2: B6Ng01-034B09.g_71_837

seq1  GAATTCAGTTGATGCCATGGAAATTTTTGGCAATTCTGAGCACCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATGCCATGGAAATTTTTGGCAATTCTGAGCACCATTTCA  50

seq1  TACTGTGAGATTTTTATCTGAAACACTGCAAGATTTTAAAGAGTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAGATTTTTATCTGAAACACTGCAAGATTTTAAAGAGTAATTTT  100

seq1  CCATTTCCTCCAGTGCAGCACTACCTTCCTGGGCTAATATGCCCTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTCCAGTGCAGCACTACCTTCCTGGGCTAATATGCCCTTCCTA  150

seq1  TGTGACCTCTGTGGGACCAGACAGACTGGCTTTGGGCTTTTATCATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTCTGTGGGACCAGACAGACTGGCTTTGGGCTTTTATCATGTTT  200

seq1  TCTCCAGGTCTCATCAAGCCCTATCCACTGGTTTAAAACATGTAGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGTCTCATCAAGCCCTATCCACTGGTTTAAAACATGTAGTTCTT  250

seq1  GGTGAAGATCTTTAGATGTTCAGGGACAAGGATGAAGCAGGGACAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGATCTTTAGATGTTCAGGGACAAGGATGAAGCAGGGACAGAGAG  300

seq1  AATGGCCAACCAATGACTGGCCCAAATTGATACCCATCCCATGGGCAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCAACCAATGACTGGCCCAAATTGATACCCATCCCATGGGCAAGC  350

seq1  ACCAATCCCTATCACTAGTAGTGATACTCTGTTATGCTTGTAGACAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCCTATCACTAGTAGTGATACTCTGTTATGCTTGTAGACAGGAG  400

seq1  TCTGTCTTTTGAGAGGCTCCATCCAGCAGCTAACCAGAACAGATGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTTGAGAGGCTCCATCCAGCAGCTAACCAGAACAGATGCAGAG  450

seq1  AACCAGAGGCAAACACTGGAGGGAGCTTGGGGAGCCTTGTCGAAGAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGCAAACACTGGAGGGAGCTTGGGGAGCCTTGTCGAAGAGTTG  500

seq1  AGGGAATGACTGGGAAACCTGAAGAGGATCGAGACTCCACAGGAAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGACTGGGAAACCTGAAGAGGATCGAGACTCCACAGGAAGATCA  550

seq1  ACAGAATCAACTAATCTGGACCCTTGGGGACTCCCAGAGACTGAACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAACTAATCTGGACCCTTGGGGACTCCCAGAGACTGAACTATC  600

seq1  AACCAAAGAGCAAGCATGGCTGGTACAAGTTGCACATATGTAGCAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGCAAGCATGGCTGGTACAAGTTGCACATATGTAGCAGATGT  650

seq1  ACAGCTTGGTCTTCATGTGAGTCCCCCAACAACTAGAGTGGGGGGATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGTCTTCATGTGAGTCCCCCAACAACTAGAGTGGGGGGATGTC  700

seq1  CCTGAATCTGTTGCCTATTTGTCCCCTAACTGAGCCCCCTTGTCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTGTTGCCTATTTGTCCCCTAACTGAGCCCCCTTGTCTGACCT  750

seq1  CAATGGGAGAGGATGCT  767
      |||||||||||||||||
seq2  CAATGGGAGAGGATGCT  767