BAC Information

Click to search

BAC

Clone NameB6Ng01-034C23
Chromosome1 (Build37)
Map Location 92,820,386 - 92,957,428
singlet/doubletdoublet
Overlap geneMlph, Prlh, Rab17, Lrrfip1
Upstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
Downstream geneGm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C23.bB6Ng01-034C23.g
ACCDH863014DH863015
length1,024550
definitionDH863014|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C23, 5' end.DH863015|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,820,386 - 92,821,408)(92,956,873 - 92,957,428)
sequence
gaattcctgagataatccatgaaagacttgtcatcatgagacacagacag
acaaatgggcatatttaaaaatcagcagcagaagggggctggagagatgg
ctcagcgattaaaagcactgactgctcttccagaggtcctgagttcaatt
cccagtacccacatggtggcttacaaccatcgctaacggggatctaatac
cctcttctggtgtgtctgtctgaagacagcgacagtgtactcacatacat
gaaataaataatttttttttaatcagcagaagggacaggagaggtggctc
agtggttaagagcacttgttgctcttccagaggaactgggtttgattccc
aggacccacatgatggttcacgaccatctgtagccccagttccaggggca
ccaatgccttcttctggccttcatgggtaccagacatatacacatggtgc
acagacggccactgagataaaaagcagacatactcttgaaataaaattaa
aattaaaactcaggagaaaactaagaaaaattaagtctggtccatcatcc
ctatgaacaatgggagccagggcagcaaagagcaatggctaacagaggaa
gtcatctgtctgccagggtggagattagcattggtgtgagatgccaacgg
gattctgctttgcctctgtctcctgcattcacacattcccaccccccacc
ccccccactacattctccccagcagtttcttttccaccttgactactcct
ttcccagaatcttcaggaaggctgccacacccatttcctcacatcccctg
acaggtttctttaccttctaccttccaagtctccgcctccaccccttact
cttttcttttctgttgcctcctacaagcaggctcctggagggtccacaat
tccttcgagtactcattactagtatctgggtctagccatggattcctctt
tagtcatggagttcagctgcccgtgcaagcaaaccttggctgactctgga
gcacagctttgcgtgctgatctct
tcacaacacaccctttctcgtatttgatccacattcctgggaatagctat
ggaagaagcctcgttctaatgcaatgaatctgtcaatctgggttggagga
ggagagatgccacgatctaccagataaagcctcactcactatgatgcctg
cctgacagggacttagagtccctcagcattaccagggcctgacgttcaat
cccataaaacagattcacaagtaacatctaatatgtcagcataacttaaa
aaaaatagcaaaatagaggctcctaccaatcttccacttccactattctc
tgccttagttagaaaaatagagtcccgtcaacatcctcccttgtgaaaat
taccagacatagaaaagggtaataaactgggtgtggtaccacatgcctgt
aatcccagcactccggggccagaagtgggaggatcaagaaatcttgtcag
ctatatgagacctggtgtcaaaaaaggagtgtgtgtgtggggtgtcaccc
acacagagaagaaggggaggagaaaggattgtgtgtgggaggggtgactg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92820386_92821408
seq2: B6Ng01-034C23.b_47_1070

seq1  GAATTCCTGAGATAATCCATGAAAGACTTGTCATCATGAGACACAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGATAATCCATGAAAGACTTGTCATCATGAGACACAGACAG  50

seq1  ACAAATGGGCATATTTAAAAATCAGCAGCAGAAGGGGGCTGGAGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGCATATTTAAAAATCAGCAGCAGAAGGGGGCTGGAGAGATGG  100

seq1  CTCAGCGATTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGATTAAAAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATT  150

seq1  CCCAGTACCCACATGGTGGCTTACAACCATCGCTAACGGGGATCTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACCCACATGGTGGCTTACAACCATCGCTAACGGGGATCTAATAC  200

seq1  CCTCTTCTGGTGTGTCTGTCTGAAGACAGCGACAGTGTACTCACATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGTCTGAAGACAGCGACAGTGTACTCACATACAT  250

seq1  GAAATAAATAATTTTTTTTTAATCAGCAGAAGGGACAGGAGAGGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAATTTTTTTTTAATCAGCAGAAGGGACAGGAGAGGTGGCTC  300

seq1  AGTGGTTAAGAGCACTTGTTGCTCTTCCAGAGGAACTGGGTTTGATTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCACTTGTTGCTCTTCCAGAGGAACTGGGTTTGATTCCC  350

seq1  AGGACCCACATGATGGTTCACGACCATCTGTAGCCCCAGTTCCAGGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCACATGATGGTTCACGACCATCTGTAGCCCCAGTTCCAGGGGCA  400

seq1  CCAATGCCTTCTTCTGGCCTTCATGGGTACCAGACATATACACATGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCCTTCTTCTGGCCTTCATGGGTACCAGACATATACACATGGTGC  450

seq1  ACAGACGGCCACTGAGATAAAAAGCAGACATACTCTTGAAATAAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGGCCACTGAGATAAAAAGCAGACATACTCTTGAAATAAAATTAA  500

seq1  AATTAAAACTCAGGAGAAAACTAAGAAAAATTAAGTCTGGTCCATCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTCAGGAGAAAACTAAGAAAAATTAAGTCTGGTCCATCATCC  550

seq1  CTATGAACAATGGGAGCCAGGGCAGCAAAGAGCAATGGCTAACAGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACAATGGGAGCCAGGGCAGCAAAGAGCAATGGCTAACAGAGGAA  600

seq1  GTCATCTGTCTGCCAGGGTGGAGATTAGCATTGGTGTGAGATGCCAACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGTCTGCCAGGGTGGAGATTAGCATTGGTGTGAGATGCCAACGG  650

seq1  GATTCTGCTTTGCCTCTGTCTCCTGCATTCACACATTCCCACCCCCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCTTTGCCTCTGTCTCCTGCATTCACACATTCCCACCCCCCACC  700

seq1  CCCCCCACTACATTCTCCCCAGCAGTTTCTTTTCCACCTTGACTACTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACTACATTCTCCCCAGCAGTTTCTTTTCCACCTTGACTACTCCT  750

seq1  TTCCCAGAATCTTCAGGAAGGCTGCCACACCCATTTCCTCACAT-CCCTG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCCAGAATCTTCAGGAAGGCTGCCACACCCATTTCCTCACATCCCCTG  800

seq1  ACAAGGTTTCTTTACCTCCTACCTT-CAAGTCTCCGCCTCCACCCCTTAC  848
      || |||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AC-AGGTTTCTTTACCTTCTACCTTCCAAGTCTCCGCCTCCACCCCTTAC  849

seq1  TC-TTTCCTTTCTGTTGCCTCCTAC-AGCAGGCTC--TGAGGGT-CACAA  893
      || |||| ||||||||||||||||| |||||||||   |||||| |||||
seq2  TCTTTTCTTTTCTGTTGCCTCCTACAAGCAGGCTCCTGGAGGGTCCACAA  899

seq1  TTCCTTCGAGTAACTCATTACTAGTATCT-GGTCTAGCCATGGATTCCCT  942
      ||||||||||| ||||||||||||||||| |||||||||||||||| |||
seq2  TTCCTTCGAGT-ACTCATTACTAGTATCTGGGTCTAGCCATGGATT-CCT  947

seq1  CTTTAGTCATGGAGTTCAGCTGCCCGTGCAAGGCAAAACCTTGGCTGACT  992
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  CTTTAGTCATGGAGTTCAGCTGCCCGTGCAAG--CAAACCTTGGCTGACT  995

seq1  CTGGAGCACAGCCTTTGCGTGCTGACTCTCT  1023
      ||||||||||| ||||||||||||| |||||
seq2  CTGGAGCACAG-CTTTGCGTGCTGA-TCTCT  1024

seq1: chr1_92956873_92957428
seq2: B6Ng01-034C23.g_65_620 (reverse)

seq1  CAGTCACCCCTCCCACACACAATCCTTTCTCCTCCCCTTCTTCTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCCCTCCCACACACAATCCTTTCTCCTCCCCTTCTTCTCTGTGT  50

seq1  GGGTGACACCCCACACACACACTCCTTTTTTGACACCAGGTCTCATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACACCCCACACACACACTCCTTTTTTGACACCAGGTCTCATATAG  100

seq1  CTGACAAGATTTCTTGATCCTCCCACTTCTGGCCCCGGAGTGCTGGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGATTTCTTGATCCTCCCACTTCTGGCCCCGGAGTGCTGGGATT  150

seq1  ACAGGCATGTGGTACCACACCCAGTTTATTACCCTTTTCTATGTCTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGTGGTACCACACCCAGTTTATTACCCTTTTCTATGTCTGGTA  200

seq1  ATTTTCACAAGGGAGGATGTTGACGGGACTCTATTTTTCTAACTAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAAGGGAGGATGTTGACGGGACTCTATTTTTCTAACTAAGGCA  250

seq1  GAGAATAGTGGAAGTGGAAGATTGGTAGGAGCCTCTATTTTGCTATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGTGGAAGTGGAAGATTGGTAGGAGCCTCTATTTTGCTATTTTT  300

seq1  TTTAAGTTATGCTGACATATTAGATGTTACTTGTGAATCTGTTTTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTATGCTGACATATTAGATGTTACTTGTGAATCTGTTTTATGGG  350

seq1  ATTGAACGTCAGGCCCTGGTAATGCTGAGGGACTCTAAGTCCCTGTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACGTCAGGCCCTGGTAATGCTGAGGGACTCTAAGTCCCTGTCAGG  400

seq1  CAGGCATCATAGTGAGTGAGGCTTTATCTGGTAGATCGTGGCATCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCATAGTGAGTGAGGCTTTATCTGGTAGATCGTGGCATCTCTCC  450

seq1  TCCTCCAACCCAGATTGACAGATTCATTGCATTAGAACGAGGCTTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACCCAGATTGACAGATTCATTGCATTAGAACGAGGCTTCTTCC  500

seq1  ATAGCTATTCCCAGGAATGTGGATCAAATACGAGAAAGGGTGTGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATTCCCAGGAATGTGGATCAAATACGAGAAAGGGTGTGTTGTGA  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556