BAC Information

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BAC

Clone NameB6Ng01-034I08
Chromosome1 (Build37)
Map Location 57,546,595 - 57,710,573
singlet/doubletdoublet
Overlap geneLOC667339
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik
Downstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I08.bB6Ng01-034I08.g
ACCDH863249DH863250
length1631,039
definitionDH863249|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I08, 5' end.DH863250|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,710,411 - 57,710,573)(57,546,595 - 57,547,653)
sequence
gaattcacttttgaaagcacaacaagtaaaggatgaggaagtggtatctt
ctgtgtttacatctgatttggcaagaatgttggataatgtgagggatgag
atagaggagctagcttgccatttcttacagctggtgtgtgtgtgtggcgg
gtgggtgggggtg
gaattcatctcaagttaccagtggtgggaatggagggactgatttctggc
ttcagaaggctgcaagctctgccaagggctgaacttagcccctgctgttg
atatgggcaagtgtcctttcatggaaacgacttcatcaagaaaactgttt
ctgctgtaattatcccaggcaagacttgaatctgtactttcaaaacaaaa
cacgttgtctggttctaaagcgatcttgcacattattgtgcttccagaag
ctttgctgctttataatgacaggaatggattcctaccccagagcccccag
aaacagattgtgatttccattcttagctttccacctaaatagttgtctag
ctgattttgcttatttgtgctcttactcattgatggcacatttggaaata
aaatcctgaggttgtcacggagctgcacgtatttacatagttctcaaatg
ccaagatgataaacattgtgcagatgttccccaggacagtaacccagcct
gcctttggcagtttcacacacaagtgactaaacacatcagttctggaaat
acaggggcatgcgctcacggactcttcctcccttgcaaaaagcagaggct
gagattaattaaagccaggagcttgttactttgaaagataacataatgta
aactgttccaaaatgatctcccttctagcaaatgaggcctattgggggga
agccagggaggtaaactagggggaaaaaaacccattgaattcccttggcc
aaaggtctgctgatttttatttgcatattcagcaaatattggatggtcag
agtcacatgtattgaatgaataactgagtgctatgtagagaatgaatgat
tggaattctgtattgactagttatggatgcaagtgtggttagcatcctgg
ctctgaggcgtggggttccattaggtgcttagctctgtaagtgtcctcct
gcctatttgcattctgagtcaacactataaacgctgtggttttgccccga
tataaaatgaataagctgtggtggattcaagccttagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57710411_57710573
seq2: B6Ng01-034I08.b_40_202 (reverse)

seq1  CACCCCCACCCACCCGCCACACACACACACCAGCTGTAAGAAATGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACCCACCCGCCACACACACACACCAGCTGTAAGAAATGGCAAG  50

seq1  CTAGCTCCTCTATCTCATCCCTCACATTATCCAACATTCTTGCCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCTCTATCTCATCCCTCACATTATCCAACATTCTTGCCAAATCA  100

seq1  GATGTAAACACAGAAGATACCACTTCCTCATCCTTTACTTGTTGTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAACACAGAAGATACCACTTCCTCATCCTTTACTTGTTGTGCTTT  150

seq1  CAAAAGTGAATTC  163
      |||||||||||||
seq2  CAAAAGTGAATTC  163

seq1: chr1_57546595_57547653
seq2: B6Ng01-034I08.g_69_1107

seq1  GAATTCATCTCAAGTTACCAGTGGTGGGAATGGAGGGACTGATTTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAAGTTACCAGTGGTGGGAATGGAGGGACTGATTTCTGGC  50

seq1  TTCAGAAGGCTGCAAGCTCTGCCAAGGGCTGAACTTAGCCCCTGCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGGCTGCAAGCTCTGCCAAGGGCTGAACTTAGCCCCTGCTGTTG  100

seq1  ATATGGGCAAGTGTCCTTTCATGGAAACGACTTCATCAAGAAAACTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCAAGTGTCCTTTCATGGAAACGACTTCATCAAGAAAACTGTTT  150

seq1  CTGCTGTAATTATCCCAGGCAAGACTTGAATCTGTACTTTCAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTAATTATCCCAGGCAAGACTTGAATCTGTACTTTCAAAACAAAA  200

seq1  CACGTTGTCTGGTTCTAAAGCGATCTTGCACATTATTGTGCTTCCAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGTCTGGTTCTAAAGCGATCTTGCACATTATTGTGCTTCCAGAAG  250

seq1  CTTTGCTGCTTTATAATGACAGGAATGGATTCCTACCCCAGAGCCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGCTTTATAATGACAGGAATGGATTCCTACCCCAGAGCCCCCAG  300

seq1  AAACAGATTGTGATTTCCATTCTTAGCTTTCCACCTAAATAGTTGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTGTGATTTCCATTCTTAGCTTTCCACCTAAATAGTTGTCTAG  350

seq1  CTGATTTTGCTTATTTGTGCTCTTACTCATTGATGGCACATTTGGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTGCTTATTTGTGCTCTTACTCATTGATGGCACATTTGGAAATA  400

seq1  AAATCCTGAGGTTGTCACGGAGCTGCACGTATTTACATAGTTCTCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGAGGTTGTCACGGAGCTGCACGTATTTACATAGTTCTCAAATG  450

seq1  CCAAGATGATAAACATTGTGCAGATGTTCCCCAGGACAGTAACCCAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGATAAACATTGTGCAGATGTTCCCCAGGACAGTAACCCAGCCT  500

seq1  GCCTTTGGCAGTTTCACACACAAGTGACTAAACACATCAGTTCTGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGCAGTTTCACACACAAGTGACTAAACACATCAGTTCTGGAAAT  550

seq1  ACAGGGGCATGCGCTCACGGACTCTTCCTCCCTTGCAAAAAGCAGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGCATGCGCTCACGGACTCTTCCTCCCTTGCAAAAAGCAGAGGCT  600

seq1  GAGATTAATTAAAGCCAGGAGCTTGTTACTTTGAAAGATAACATAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAATTAAAGCCAGGAGCTTGTTACTTTGAAAGATAACATAATGTA  650

seq1  AACTGTTCCAAAATGATCTCCCTTCTAGCAAATGAGGCCTATT-GGGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTGTTCCAAAATGATCTCCCTTCTAGCAAATGAGGCCTATTGGGGGGA  700

seq1  AGCCAGGGAGGTAAACTAGGGGGAAAAAAACCCATTGAATTCCCTTGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGAGGTAAACTAGGGGGAAAAAAACCCATTGAATTCCCTTGGCC  750

seq1  AAAGGTCTGCTGATTTTTATTTGCATATTCAGGCAAATATTGGATGGTCA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAGGTCTGCTGATTTTTATTTGCATATTCA-GCAAATATTGGATGGTCA  799

seq1  GAGTCACATGTATTGAATGAATAACTGAGTGCCTATGTAAGAGAATGAAT  849
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  GAGTCACATGTATTGAATGAATAACTGAGTG-CTATGT-AGAGAATGAAT  847

seq1  GATTGGAATTCTGTATTGACTAAGTTATGGATGCAAGTTGTGGTTAGCAA  899
      ||||||||||||||||||||| ||||||||||||||| |||||||||| |
seq2  GATTGGAATTCTGTATTGACT-AGTTATGGATGCAAG-TGTGGTTAGC-A  894

seq1  TCCTGGCTCTGAGGCGTGGGGTTCCCATTAGGTGCTTAGCCTCTGTTAAG  949
      ||||||||||||||||||||||| ||||||||||||||| ||||| ||||
seq2  TCCTGGCTCTGAGGCGTGGGGTT-CCATTAGGTGCTTAG-CTCTG-TAAG  941

seq1  TGTCCTCCTTGCCTTATTATGCATTCTGTAGGTCAACACTATAAAACAGC  999
      |||||||| |||| |||| |||||||||   ||||||||||||||   ||
seq2  TGTCCTCC-TGCC-TATT-TGCATTCTG--AGTCAACACTATAAA--CGC  984

seq1  TGTTGGTTTTTTGCCTCCGATATAAAATGATTAAGGCTGTGGTGGATTCA  1049
      ||| |   ||||||| |||||||||||||| ||| |||||||||||||||
seq2  TGTGG---TTTTGCC-CCGATATAAAATGAATAA-GCTGTGGTGGATTCA  1029

seq1  AGCCTAAGTC  1059
      ||||| ||||
seq2  AGCCTTAGTC  1039