BAC Information

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BAC

Clone NameB6Ng01-034L23
Chromosome1 (Build37)
Map Location 133,714,790 - 133,832,014
singlet/doubletdoublet
Overlap geneSlc41a1, Rab7l1, Nucks1
Upstream genePigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik
Downstream geneSlc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034L23.bB6Ng01-034L23.g
ACCDH863409DH863410
length955696
definitionDH863409|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L23, 5' end.DH863410|Mus musculus domesticus DNA, BAC clone: B6Ng01-034L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,831,045 - 133,832,014)(133,714,790 - 133,715,483)
sequence
gaattcactaacttccagaagacaaaggtttaaatgccagacatttacaa
acacgcactcacacatacccacatcacacttcagggttttatacatgtta
tttttagggcataactgagtactatactccccaaccctccataaaaagca
aaaacaaaacaaaaaacccccaaaactggaaaaaaaaaaccaccaaaaaa
ccccacccaaaatcattttaccctcccccatgatctagaaaaccccccac
acccaatatacaaagtgtccacccaactgtgatgctctacagccacagag
catgctcagatgtcaccagttcattcttcattggcatggcaacaggtagg
catatgggatcctcctagtggttagtacaatcacaccactgtgaattagg
ctttgaacaaaagtataacctatggatttgatattcagaatcatgtattc
tcttttctaagacaaagggggaaaaaaaaggaggttcaaatagtaacatg
gctattgatagcttgacatcgcaatactcaaaaaacaaaaggaaaaacta
aaaaaacaaaacaaaacaaaaaaaccttccccatcttcaagtaactcagc
agcttcctccatagagaaaatgacaatattctaccctcaagagcaaccca
gtggctttaactttcccctcccctttgggaagaagcaagtactgctagtt
tctgacttcgtccgcacaccatgaagtgcctagcctgcatttcttcctac
ccagtcacaggtgggaatgtttctagtgtagctttctggtgctactggta
aagagaactgtcaaagagcatggattcacagcagcaacaaagcttttctg
tttcttcagtctgcctggcaggctcctaaacttgagttttgttaactatt
tcctctctaaccacatgtcctggactaaataagctcatttaaagtgtcac
ttgac
gaattcaggatctatctgaattcaaagtctatgctgctagttctgaagag
aaaacagacctccaaaagcccaaggtggcaggatgttaaggaacagctct
agaactaaaaggaggtgacaattcccaagtcctgactcccaaaaaaacct
gtggggtttggcttattccttgtgacccctgaggaaagggagacaacaaa
aattcctctccatttggaattagttccttgctccagctctgttccctggg
ttgacctctccctattcaaacctctccctgtgtctgacagccagtgcctg
tccctgctcccactctctaggttcagctgtatttccttacaatcacacct
ctaatgagcacagagtgcctggagggaggagggggcagggaatttgtccc
cttctggctcacttccttttctagccttagaaaagataaagtttctgaaa
ccctcaaggggaagaaagacccttgaggggtgtgatggtgtgtatatgct
caacccaggatgtggcactattagaaagtatgacctgttgggaggaggtg
tgtcactgtgggtgtgagctttaaggctctcatcctagctgcctggaagc
tagtactctcctagcagccttcagaaagaatatatagaactctcatctcc
tcctgtaccatgcctgcctggatgctgtcacattcctgccttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133831045_133832014
seq2: B6Ng01-034L23.b_47_1001 (reverse)

seq1  GTCAGGTGACACTTTTTAAATGAGCTTTTATTTTTATGTCCAGGAACATG  50
      |||| |||||||  |||||||||||  ||||||    ||||||| |||||
seq2  GTCAAGTGACAC--TTTAAATGAGC--TTATTT---AGTCCAGG-ACATG  42

seq1  TGGGTTAGAGAGGGAAATAGTGTAAACAAAACTCAGGTTTAGGGGCCCCT  100
      | ||||||||| |||||||  || ||||||||||| ||||||| |  |||
seq2  T-GGTTAGAGA-GGAAATA--GTTAACAAAACTCAAGTTTAGGAG--CCT  86

seq1  GCCAGAGCAGACTTGAAGAAACAG-AAAGCTTTGTTGCTGCTGTGAATCC  149
      ||||| |||||| ||||||||||| |||||||||||||||||||||||||
seq2  GCCAG-GCAGAC-TGAAGAAACAGAAAAGCTTTGTTGCTGCTGTGAATCC  134

seq1  GTGCCTCTTTGGACAGTTCTCTCTACCAGTAGCACCAG-AAGCTACACTA  198
       || |||||| ||||||||||| ||||||||||||||| |||||||||||
seq2  ATG-CTCTTT-GACAGTTCTCTTTACCAGTAGCACCAGAAAGCTACACTA  182

seq1  GAAACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTT  232

seq1  CATGGTGTGCGGACGGAGGTCAGAAACTAGCAGTACTTGCTTCTTGCCAA  298
      |||||||||||||| || ||||||||||||||||||||||||||| ||||
seq2  CATGGTGTGCGGAC-GAAGTCAGAAACTAGCAGTACTTGCTTCTTCCCAA  281

seq1  AGGGGAGGGG-AAGTTAAAGCCACT-GGTTGCTCTTGAGGGTAGAATATT  346
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AGGGGAGGGGAAAGTTAAAGCCACTGGGTTGCTCTTGAGGGTAGAATATT  331

seq1  GTCATTTTCTCTATGGAGGAAGCTGCTGAGTTACTTGAAGATGGGGAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTCTCTATGGAGGAAGCTGCTGAGTTACTTGAAGATGGGGAAGG  381

seq1  TTTTTTTGTTTTGTTTTGTTTTTTTAGTTTTTCCTTTTGTTTTTTGAGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTGTTTTGTTTTTTTAGTTTTTCCTTTTGTTTTTTGAGTA  431

seq1  TTGCGATGTCAAGCTATCAATAGCCATGTTACTATTTGAACCTCCTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGATGTCAAGCTATCAATAGCCATGTTACTATTTGAACCTCCTTTTT  481

seq1  TTTCCCCCTTTGTCTTAGAAAAGAGAATACATGATTCTGAATATCAAATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTTTGTCTTAGAAAAGAGAATACATGATTCTGAATATCAAATC  531

seq1  CATAGGTTATACTTTTGTTCAAAGCCTAATTCACAGTGGTGTGATTGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTATACTTTTGTTCAAAGCCTAATTCACAGTGGTGTGATTGTAC  581

seq1  TAACCACTAGGAGGATCCCATATGCCTACCTGTTGCCATGCCAATGAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTAGGAGGATCCCATATGCCTACCTGTTGCCATGCCAATGAAGA  631

seq1  ATGAACTGGTGACATCTGAGCATGCTCTGTGGCTGTAGAGCATCACAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGTGACATCTGAGCATGCTCTGTGGCTGTAGAGCATCACAGTT  681

seq1  GGGTGGACACTTTGTATATTGGGTGTGGGGGGTTTTCTAGATCATGGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGACACTTTGTATATTGGGTGTGGGGGGTTTTCTAGATCATGGGGG  731

seq1  AGGGTAAAATGATTTTGGGTGGGGTTTTTTGGTGGTTTTTTTTTTCCAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAATGATTTTGGGTGGGGTTTTTTGGTGGTTTTTTTTTTCCAGT  781

seq1  TTTGGGGGTTTTTTGTTTTGTTTTTGCTTTTTATGGAGGGTTGGGGAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGTTTTTTGTTTTGTTTTTGCTTTTTATGGAGGGTTGGGGAGTA  831

seq1  TAGTACTCAGTTATGCCCTAAAAATAACATGTATAAAACCCTGAAGTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTCAGTTATGCCCTAAAAATAACATGTATAAAACCCTGAAGTGTG  881

seq1  ATGTGGGTATGTGTGAGTGCGTGTTTGTAAATGTCTGGCATTTAAACCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTATGTGTGAGTGCGTGTTTGTAAATGTCTGGCATTTAAACCTT  931

seq1  TGTCTTCTGGAAGTTAGTGAATTC  970
      ||||||||||||||||||||||||
seq2  TGTCTTCTGGAAGTTAGTGAATTC  955

seq1: chr1_133714790_133715483
seq2: B6Ng01-034L23.g_70_765

seq1  GAATTCAGGATCTATCTGAATTCAAAGTCTATGCTGCTAGTTCTGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATCTATCTGAATTCAAAGTCTATGCTGCTAGTTCTGAAGAG  50

seq1  AAAACAGACCTCCAAAAGCCCAAGGTGGCAGGATGTTAAGGAACAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACCTCCAAAAGCCCAAGGTGGCAGGATGTTAAGGAACAGCTCT  100

seq1  AGAACTAAAAGGAGGTGACAATTCCCAAGTCCTGACTCCCAAAAAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAAAGGAGGTGACAATTCCCAAGTCCTGACTCCCAAAAAAACCT  150

seq1  GTGGGGTTTGGCTTATTCCTTGTGACCCCTGAGGAAAGGGAGACAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTTGGCTTATTCCTTGTGACCCCTGAGGAAAGGGAGACAACAAA  200

seq1  AATTCCTCTCCATTTGGAATTAGTTCCTTGCTCCAGCTCTGTTCCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCTCCATTTGGAATTAGTTCCTTGCTCCAGCTCTGTTCCCTGGG  250

seq1  TTGACCTCTCCCTATTCAAACCTCTCCCTGTGTCTGACAGCCAGTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTCCCTATTCAAACCTCTCCCTGTGTCTGACAGCCAGTGCCTG  300

seq1  TCCCTGCTCCCACTCTCTAGGTTCAGCTGTATTTCCTTACAATCACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCCCACTCTCTAGGTTCAGCTGTATTTCCTTACAATCACACCT  350

seq1  CTAATGAGCACAGAGTGCCTGGAGGGAGGAGGGGGCAGGGAATTTGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCACAGAGTGCCTGGAGGGAGGAGGGGGCAGGGAATTTGTCCC  400

seq1  CTTCTGGCTCACTTCCTTTTCTAGCCTTAGAAAAGATAAAGTTTCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTCACTTCCTTTTCTAGCCTTAGAAAAGATAAAGTTTCTGAAA  450

seq1  CCCTCAAGGGGAAGAAAGACCCTTGAGGGGTGTGATGGTGTGTATATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAGGGGAAGAAAGACCCTTGAGGGGTGTGATGGTGTGTATATGCT  500

seq1  CAACCCAGGATGTGGCACTATTAGAAAGTATGACCTGTT-GGAGGAGGTG  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAACCCAGGATGTGGCACTATTAGAAAGTATGACCTGTTGGGAGGAGGTG  550

seq1  TGTCACTGTGGGTGTGAGCTTTAAGGCTCTCATCCTAGCTGCCTGGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTGGGTGTGAGCTTTAAGGCTCTCATCCTAGCTGCCTGGAAGC  600

seq1  TAGTACTCTCCTAGCAGCCTTCAG-AAGAATATATAGAACTCTCATCTCC  648
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGTACTCTCCTAGCAGCCTTCAGAAAGAATATATAGAACTCTCATCTCC  650

seq1  TCCTGTACCATGCCTGCCTGGATGCTGTCACATTCCTGCCTTGATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACCATGCCTGCCTGGATGCTGTCACATTCCTGCCTTGATG  696