BAC Information

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BAC

Clone NameB6Ng01-035C10
Chromosome1 (Build37)
Map Location 172,135,373 - 172,246,278
singlet/doubletdoublet
Overlap geneUhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1
Downstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C10.bB6Ng01-035C10.g
ACCDH863701DH863702
length1,1461,034
definitionDH863701|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C10, 5' end.DH863702|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,135,373 - 172,136,548)(172,245,220 - 172,246,278)
sequence
gaattcagtggcacatagctaagcaatgaagttattttccttaacttagg
aaataaaacaagaatataaattcaatgcactaacaaatctatttaatagt
ctacatttaacatttaagtacattacagttaaatagttcaaacttaaaac
atcttcccagctttattctgttcctgctcttgaaggcaaccagcactgtg
aagttcctctgtagcctgccagcatgatcagtggattataagcatatgca
ttttatgtatttcaagtaaaaagttcaactttaatatttctttttgtttt
ttccagacaggctggcctcgaactcagaaatctgcctgcctcgacctcct
aagtgctgggattaaaggaatgcgccaccactgctcggctaactttaata
tttcttaaatgtctctttctagttttgtatatttaaatatatatatatat
aatatgcttatgagtatcttgccagaagagcgcataggacactttggaac
tggagttacaagaccattatgagctgccaggtgggtgacagctgatccac
ctctctggacaactgcccagattattaaagaaatcgtctcatttgtttta
tggctgtatacttttggacggtttacaatgttcaagaaattacccagtgt
ctcctatcagaagacttcctatttcaaaactttttgatattatacacaat
attgttaacatctcatttattgagtatgtctcagagctgatgtacacttt
ttcaagcaatgtcatccaaaatttgtttaagtgccaggcaacaaaggcat
agcaatttggtttgaactgatgtagtttgatttcttccaccttaaatgtt
tattggtgaccactatgcattctttcaaagatgctactatattccagtgt
actagctcgtgacaagatccaattctaatcagagaatcagcacattagat
atgtgccacgtcactgttacactttacactgttttcctacagaaagatac
atcattccaactactgtctctgaacatgcatactttctacttgatgtact
tcttgctaccactaactttagatactaattatgaaccagctgaaagcctg
ctggggaagcctgcatcctcaggcaggtgaaacaccgttctctgtc
gaattcattcatgtgccacatcctccccagtaagacccaaatctggacac
atttggtatgtggagatgagaaaccaagaaaagatgtaggggccttgtgg
ggtcaccagccaccgaccctccatttaggccaatgaacaagacaggaaat
gtcacagacctgattccccgcagcagcatccttccttgcttcttgctctg
ctaactcaaccctgccttcctccttttcatccttctgctctgccctatgt
ggaggacacatggacaccaaggggttccttagtggtgcccgccccaggtg
caagaaagctctcgggcatacaaggcttcgcaattgcagaggcaggacag
atctctgcccaggatggactgcacatgggaactggaaaccgtattcctta
cattcctgcttctactgatgctgtctgtaagaacctttctgagcctcgct
ctcagctgaccttgtttacggattgtgttccttgatttactctttgcttg
actgctctcccctctcctccctcccacctaccctagccttctgcttccta
aaactgttttgtcattaactgttgggtcagctctctgggaaacggttctg
ttgctgtaagtgcacttacccttggatggtgtcactagttagtggctttt
gctaaataaacctttctgatttctaaaagctttcccattgtctctgctta
cttcttctatttaacctgtttcttctgtcccccttccttgtatccacttc
ctaagccaggtatcatcagctctgggacacaagatagaaagaattcacac
tgggcagtggtggtgcacacctttaatcctagcagtcaatagcaggggca
gtggatctctgtgaattcaaagccagcctgtctacagatccagccagata
gaaaatcctgtctgagcatgggctgcatgcagagcgcctgtatctgcagc
agagctctgggctggacacggctaaatgactttctgtctagaatcatgta
atcctcaggatgttccggtctcgcacacctaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172135373_172136548
seq2: B6Ng01-035C10.b_44_1189

seq1  GAATTCAGTGGCACATAGCTAAGCAATGAAGTTATTTTCCTTAACTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCACATAGCTAAGCAATGAAGTTATTTTCCTTAACTTAGG  50

seq1  AAATAAAACAAGAATATAAATTCAATGCACTAACAAATCTATTTAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAGAATATAAATTCAATGCACTAACAAATCTATTTAATAGT  100

seq1  CTACATTTAACATTTAAGTACATTACAGTTAAATAGTTCAAACTTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTAACATTTAAGTACATTACAGTTAAATAGTTCAAACTTAAAAC  150

seq1  ATCTTCCCAGCTTTATTCTGTTCCTGCTCTTGAAGGCAACCAGCACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCAGCTTTATTCTGTTCCTGCTCTTGAAGGCAACCAGCACTGTG  200

seq1  AAGTTCCTCTGTAGCCTGCCAGCATGATCAGTGGATTATAAGCATATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTCTGTAGCCTGCCAGCATGATCAGTGGATTATAAGCATATGCA  250

seq1  TTTTATGTATTTCAAGTAAAAAGTTCAACTTTAATATTTCTTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATTTCAAGTAAAAAGTTCAACTTTAATATTTCTTTTTGTTTT  300

seq1  TTCCAGACAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCGACCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCGACCTCCT  350

seq1  AAGTGCTGGGATTAAAGGAATGCGCCACCACTGCTCGGCTAACTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGGAATGCGCCACCACTGCTCGGCTAACTTTAATA  400

seq1  TTTCTTAAATGTCTCTTTCTAGTTTTGTATATTTAAATATATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAATGTCTCTTTCTAGTTTTGTATATTTAAATATATATATATAT  450

seq1  AATATGCTTATGAGTATCTTGCCAGAAGAGCGCATAGGACACTTTGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTTATGAGTATCTTGCCAGAAGAGCGCATAGGACACTTTGGAAC  500

seq1  TGGAGTTACAAGACCATTATGAGCTGCCAGGTGGGTGACAGCTGATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTACAAGACCATTATGAGCTGCCAGGTGGGTGACAGCTGATCCAC  550

seq1  CTCTCTGGACAACTGCCCAGATTATTAAAGAAATCGTCTCATTTGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGACAACTGCCCAGATTATTAAAGAAATCGTCTCATTTGTTTTA  600

seq1  TGGCTGTATACTTTTGGACGGTTTACAATGTTCAAGAAATTACCCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTATACTTTTGGACGGTTTACAATGTTCAAGAAATTACCCAGTGT  650

seq1  CTCCTATCAGAAGACTTCCTATTTCAAAACTTTTTGATATTATACACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCAGAAGACTTCCTATTTCAAAACTTTTTGATATTATACACAAT  700

seq1  ATTGTTAACATCTCATTTATTGAGTATGTCTCAGAGCTGATGTACACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAACATCTCATTTATTGAGTATGTCTCAGAGCTGATGTACACTTT  750

seq1  TTCAAGCAATGTCATCCAAAATTTGTTTAAGTGCCAGGCAACAAAGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAATGTCATCCAAAATTTGTTTAAGTGCCAGGCAACAAAGGCAT  800

seq1  AGCAATTTGGTTTGAACTGATGTAGTTTGATTTCTTCCACCTTAAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTGGTTTGAACTGATGTAGTTTGATTTCTTCCACCTTAAATGTT  850

seq1  TATTGGGTGACCACTATGCATTCTTTCAAAGATGCTACTATATTCCAGTG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATT-GGTGACCACTATGCATTCTTTCAAAGATGCTACTATATTCCAGTG  899

seq1  TTACTAGCTCGTGAACAAGATCCAATTCTTAATCAGAGAAATCAAGCACA  950
       |||||||||||| |||||||||||||| ||||||||| |||| ||||||
seq2  -TACTAGCTCGTG-ACAAGATCCAATTC-TAATCAGAG-AATC-AGCACA  944

seq1  TTAGATATGTGCACACCGGTCACTGTTACAACTTTAACCAACTGTTTTCC  1000
      |||||||||||| |||  ||||||||||| ||||||    ||||||||||
seq2  TTAGATATGTGC-CAC--GTCACTGTTAC-ACTTTA---CACTGTTTTCC  987

seq1  TACAGAAAAGATACAATCATTCCAAACTACTGTTCTCTGAACATGTCATA  1050
      ||||| |||||||| |||||||| |||||||| |||||||||||| ||||
seq2  TACAG-AAAGATAC-ATCATTCC-AACTACTG-TCTCTGAACATG-CATA  1032

seq1  CTTTCTACTTGATGGTACTTCTTGCTACCCACTTAACTTTTAGATAACTA  1100
      ||||||||||||| ||||||||||||| |||| |||| ||||||| ||||
seq2  CTTTCTACTTGAT-GTACTTCTTGCTA-CCAC-TAAC-TTTAGAT-ACTA  1077

seq1  ATTACTGAACTCAGCTGTAAGCTCTGCTGTGACAGCCTGCACTCACTCAG  1150
      |||| ||||| |||||| |||| |||||| |  |||||||| || |||||
seq2  ATTA-TGAAC-CAGCTGAAAGC-CTGCTGGGGAAGCCTGCA-TC-CTCAG  1122

seq1  GCCAGGCTGAGCACCCGTTCTCTGTC  1176
      | |||| |||    ||||||||||||
seq2  G-CAGG-TGAAACACCGTTCTCTGTC  1146

seq1: chr1_172245220_172246278
seq2: B6Ng01-035C10.g_65_1098 (reverse)

seq1  AATTAGTTGTTGCGAGACACGGAACATTCTCCTGAGGATATACCATGATT  50
      |||||| || |||||||| |||||||   |||||||||| || ||||| |
seq2  AATTAGGTG-TGCGAGAC-CGGAACA---TCCTGAGGAT-TA-CATGA-T  42

seq1  TCTAAGACAGAAAGTCACTCTAAGCCGTGTCCCAGCCCAGAGCCTCCTGC  100
      ||| |||||||||||||   | |||||||| ||||||||||||   ||||
seq2  TCT-AGACAGAAAGTCA--TTTAGCCGTGT-CCAGCCCAGAGC--TCTGC  86

seq1  TGCAGATACAGGGCGCTTCCTGCATGCCAGCCCCATGCTCCAGACAGGAT  150
      |||||||||| ||||||  ||||||| ||| |||||||| ||||||||||
seq2  TGCAGATACA-GGCGCT--CTGCATG-CAG-CCCATGCT-CAGACAGGAT  130

seq1  TTTCTATCCTTGGCTGGATCTGTAGACCAGGCTGGCTTTGAATTCACAGA  200
      ||||||||  |||||||||||||||| |||||||||||||||||||||||
seq2  TTTCTATC--TGGCTGGATCTGTAGA-CAGGCTGGCTTTGAATTCACAGA  177

seq1  GATCCACCTGCCCCTGCCTATTGACTGCTAGGATTAAAGGTGTGCACCAC  250
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GATCCA-CTGCCCCTG-CTATTGACTGCTAGGATTAAAGGTGTGCACCAC  225

seq1  CACTGCCCAGTGTGAATTCTTTCTATCTTGTGTCCCAGAGCTGATGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCAGTGTGAATTCTTTCTATCTTGTGTCCCAGAGCTGATGATAC  275

seq1  CTGGCTTAGGAAGTGGATACAAGGAAGGGGGACAGAAGAAACAGGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTAGGAAGTGGATACAAGGAAGGGGGACAGAAGAAACAGGTTAAA  325

seq1  TAGAAGAAGTAAGCAGAGACAATGGGAAAGCTTTTAGAAATCAGAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAGTAAGCAGAGACAATGGGAAAGCTTTTAGAAATCAGAAAGGT  375

seq1  TTATTTAGCAAAAGCCACTAACTAGTGACACCATCCAAGGGTAAGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGCAAAAGCCACTAACTAGTGACACCATCCAAGGGTAAGTGCAC  425

seq1  TTACAGCAACAGAACCGTTTCCCAGAGAGCTGACCCAACAGTTAATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAACAGAACCGTTTCCCAGAGAGCTGACCCAACAGTTAATGACA  475

seq1  AAACAGTTTTAGGAAGCAGAAGGCTAGGGTAGGTGGGAGGGAGGAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTTAGGAAGCAGAAGGCTAGGGTAGGTGGGAGGGAGGAGAGGG  525

seq1  GAGAGCAGTCAAGCAAAGAGTAAATCAAGGAACACAATCCGTAAACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGTCAAGCAAAGAGTAAATCAAGGAACACAATCCGTAAACAAGG  575

seq1  TCAGCTGAGAGCGAGGCTCAGAAAGGTTCTTACAGACAGCATCAGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAGAGCGAGGCTCAGAAAGGTTCTTACAGACAGCATCAGTAGAA  625

seq1  GCAGGAATGTAAGGAATACGGTTTCCAGTTCCCATGTGCAGTCCATCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATGTAAGGAATACGGTTTCCAGTTCCCATGTGCAGTCCATCCTG  675

seq1  GGCAGAGATCTGTCCTGCCTCTGCAATTGCGAAGCCTTGTATGCCCGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGATCTGTCCTGCCTCTGCAATTGCGAAGCCTTGTATGCCCGAGA  725

seq1  GCTTTCTTGCACCTGGGGCGGGCACCACTAAGGAACCCCTTGGTGTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGCACCTGGGGCGGGCACCACTAAGGAACCCCTTGGTGTCCAT  775

seq1  GTGTCCTCCACATAGGGCAGAGCAGAAGGATGAAAAGGAGGAAGGCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCCACATAGGGCAGAGCAGAAGGATGAAAAGGAGGAAGGCAGGG  825

seq1  TTGAGTTAGCAGAGCAAGAAGCAAGGAAGGATGCTGCTGCGGGGAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTAGCAGAGCAAGAAGCAAGGAAGGATGCTGCTGCGGGGAATCAG  875

seq1  GTCTGTGACATTTCCTGTCTTGTTCATTGGCCTAAATGGAGGGTCGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGACATTTCCTGTCTTGTTCATTGGCCTAAATGGAGGGTCGGTGG  925

seq1  CTGGTGACCCCACAAGGCCCCTACATCTTTTCTTGGTTTCTCATCTCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACCCCACAAGGCCCCTACATCTTTTCTTGGTTTCTCATCTCCAC  975

seq1  ATACCAAATGTGTCCAGATTTGGGTCTTACTGGGGAGGATGTGGCACATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAATGTGTCCAGATTTGGGTCTTACTGGGGAGGATGTGGCACATG  1025

seq1  AATGAATTC  1059
      |||||||||
seq2  AATGAATTC  1034