BAC Information

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BAC

Clone NameB6Ng01-035D10
Chromosome1 (Build37)
Map Location 41,202,957 - 41,367,558
singlet/doubletdoublet
Overlap geneLOC100041441
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D10.bB6Ng01-035D10.g
ACCDH863745DH863746
length1,073605
definitionDH863745|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D10, 5' end.DH863746|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,366,439 - 41,367,558)(41,202,957 - 41,203,558)
sequence
gaattctttgtttagctctgtaccccatttttaatgaggttatttgaata
tctggaatccagcttctttgagctcttggtatatattggatattagtccc
ctatcagatttaggattggtaaaaatcctttcctaatccgttggtggcct
ttttgtcttattgcaaaaaaagctttgcaatttcatgaggtcccatttgt
caattcttgatcttacagcacaagccattgctgttctgtttaggaatttt
tcccccagtgcccatatcttcgaggcttttccccacttcctcctctgtaa
atttcagtgtctctggttttatgtggagttctttgatccacttagacttg
agctttgtacaaggagataagaatggatcaattctcagcttatgattctt
aactttatacaggggtacatactgaaaacacaataagattaagtgaataa
aaatgataaattattggagtaaataaaatatatacacaataagagaaaaa
ttgaattcttaattttgaaattggatttttcctaatgatgtgtgtgtgtg
tgcacttgtatacacataacggggatgattaagtgggcttgagagttcat
acagggtttctgcacaatggaggaggcatagatctagtaacagctcttgt
aagaaatttccacatttccaatccatgtctgaacgttctccagagtatgc
ttgtgtcaagtccttattgacaggtcaagaatgtagagcaagaaagtcat
cggagaaccacaggaacagttatagatactcctgttcagaaaagaaaaag
atgcagcaagtcacattgctctccaagatctcagcatctactagagagat
gacacacacatgatggtgagcttcccccagttaactcagatctcagcatc
tactagagagatgaccacacatgatgtgagctcccccagtactcagatct
cagcatctactagagagatgaccacacatgatgtgagctccccaggtact
cagatccagcatctactaaaagatgacccacatgatgtagctcccaagta
cctctgaaactgcctccaggtat
gaattcttcttgtagcggtggatgagagagagagagagagagagagagag
agagagagagagagagaggcagggaacagggacagggacagggaaagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagatctgcaatgcactctggtcacagcccctagtgtttggttcac
tttttgtctttccagtagatgtctttcgtcaacctgatgctctctgcaaa
tcccaagttctctgttgtcactgtggtcttaaggtgaagacaggaacatg
acagagaacgtgggacacagcagctcatttccttcctcccctttgatctg
caaacttttggggtcaaagagagaaatatatatgcaagaagatgcttgcg
atgggactcagagcccagccctgctgaattactgaggatctcagaaacac
acatggggcaattgaggaatttggaaataacatataaaaatgcaggaaat
attgaaaaggcaacttcaaagacataggattttattataacttttcatct
taggatggggcaggggtaaatggtgctatgtgaaccctcttccaaacatg
ttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41366439_41367558
seq2: B6Ng01-035D10.b_43_1115 (reverse)

seq1  ATACCTGTGAGGCAGTTTTCAGAAAGAGTTAACTTGGGGGGAAGCCTCAC  50
      ||||||| ||||||||||      |||| | ||||||| |       |  
seq2  ATACCTG-GAGGCAGTTT-----CAGAGGT-ACTTGGGAG-------CTA  36

seq1  CATCAATGTGTGTGTCATCTCTCTAGTAGATGCTGAGATCTTGAGTTAAC  100
      |||||   |||| ||||||| | |||||||||||| |||| |||||  ||
seq2  CATCA---TGTGGGTCATCT-TTTAGTAGATGCTG-GATC-TGAGT--AC  78

seq1  TTGGGGGGAAGCCTCACCATCAATGTGTGTGTCATCTCTCTAGTAGATGC  150
       ||||| |    |||| |||| ||||||| ||||||||||||||||||||
seq2  CTGGGGAG----CTCA-CATC-ATGTGTG-GTCATCTCTCTAGTAGATGC  121

seq1  TGAGATCTTGAGTTAACTTGGGGGGAAGCCTCACCATCAATGTGTGTGTC  200
      ||||||| |||||  ||| |||| |    |||| |||| ||||||| |||
seq2  TGAGATC-TGAGT--ACTGGGGGAG----CTCA-CATC-ATGTGTG-GTC  161

seq1  ATCTCTCTAGTAGATGCTGAGATCTTGAGTTAACTTGGGGGGAAGCCTCA  250
      |||||||||||||||||||||||| ||||||||||  |||||||| ||||
seq2  ATCTCTCTAGTAGATGCTGAGATC-TGAGTTAACT--GGGGGAAG-CTCA  207

seq1  CCATCAATGTGTGTGTCATCTCTCTAGTAGATGCTGAGATCTTGGAAGAG  300
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATC-ATGTGTGTGTCATCTCTCTAGTAGATGCTGAGATCTTGG-AGAG  255

seq1  CAATGTGGCTTTGCTGCATCTTTTTCTTTTTCTGAACAGGAGTATCTATA  350
      ||||||| | |||||||||||||||| |||||||||||||||||||||||
seq2  CAATGTGAC-TTGCTGCATCTTTTTC-TTTTCTGAACAGGAGTATCTATA  303

seq1  ACTGTTCCTGTGGTTCTCCGATGACTTTCTTGCTCTACCTTCTTGACCTG  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGTTCCTGTGGTTCTCCGATGACTTTCTTGCTCTACATTCTTGACCTG  353

seq1  TCAATAAGGACTTGACACAAGCATACTCTGGAGAACGTTCAGACATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGGACTTGACACAAGCATACTCTGGAGAACGTTCAGACATGGAT  403

seq1  TGGAAATGTGGAAATTTCTTACAAGAGCTGTTACTAGATCTATGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTGGAAATTTCTTACAAGAGCTGTTACTAGATCTATGCCTCCT  453

seq1  CCATTGTGCAGAAACCCTGTATGAACTCTCAAGCCCACTTAATCATCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGCAGAAACCCTGTATGAACTCTCAAGCCCACTTAATCATCCCC  503

seq1  GTTATGTGTATACAAGTGCACACACACACACATCATTAGGAAAAATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGTATACAAGTGCACACACACACACATCATTAGGAAAAATCCAA  553

seq1  TTTCAAAATTAAGAATTCAATTTTTCTCTTATTGTGTATATATTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATTAAGAATTCAATTTTTCTCTTATTGTGTATATATTTTATTT  603

seq1  ACTCCAATAATTTATCATTTTTATTCACTTAATCTTATTGTGTTTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATAATTTATCATTTTTATTCACTTAATCTTATTGTGTTTTCAGT  653

seq1  ATGTACCCCTGTATAAAGTTAAGAATCATAAGCTGAGAATTGATCCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCCTGTATAAAGTTAAGAATCATAAGCTGAGAATTGATCCATTC  703

seq1  TTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAAAGAACTCCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAAAGAACTCCACAT  753

seq1  AAAACCAGAGACACTGAAATTTACAGAGGAGGAAGTGGGGAAAAGCCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAGACACTGAAATTTACAGAGGAGGAAGTGGGGAAAAGCCTCG  803

seq1  AAGATATGGGCACTGGGGGAAAAATTCCTAAACAGAACAGCAATGGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGGGCACTGGGGGAAAAATTCCTAAACAGAACAGCAATGGCTTG  853

seq1  TGCTGTAAGATCAAGAATTGACAAATGGGACCTCATGAAATTGCAAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAAGATCAAGAATTGACAAATGGGACCTCATGAAATTGCAAAGCT  903

seq1  TTTTTTGCAATAAGACAAAAAGGCCACCAACGGATTAGGAAAGGATTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCAATAAGACAAAAAGGCCACCAACGGATTAGGAAAGGATTTTT  953

seq1  ACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATACCAAGAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATACCAAGAGCT  1003

seq1  CAAAGAAGCTGGATTCCAGATATTCAAATAACCTCATTAAAAATGGGGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCTGGATTCCAGATATTCAAATAACCTCATTAAAAATGGGGTA  1053

seq1  CAGAGCTAAACAAAGAATTC  1120
      ||||||||||||||||||||
seq2  CAGAGCTAAACAAAGAATTC  1073

seq1: chr1_41202957_41203558
seq2: B6Ng01-035D10.g_65_669

seq1  GAATTCTTCTTGTAGCGGTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGTAGCGGTGGATGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGGCAGGGAACAGGGACAGGGACAGGGAA--AGA  98
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AGAGAGAGAGAGAGAGAGGCAGGGAACAGGGACAGGGACAGGGAAAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAGAGAGATCTGCAATGCACTCTGGTCACAGCCCCTAGTGTTTGGTTCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATCTGCAATGCACTCTGGTCACAGCCCCTAGTGTTTGGTTCAC  200

seq1  TTTTTGTCTTTCCAGTAGATGTCTTTCGTCAACCTGATGCTCTCTGCAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTTCCAGTAGATGTCTTTCGTCAACCTGATGCTCTCTGCAAA  250

seq1  TCCCAAGTTCTCTGTTGTCACTGTGGTCTTAAGGTGAAGACAGGAACATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTTCTCTGTTGTCACTGTGGTCTTAAGGTGAAGACAGGAACATG  300

seq1  ACAGAGAACGTGGGACACAGCAGCTCATTTCCTTCCTCCCCTTTGATCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACGTGGGACACAGCAGCTCATTTCCTTCCTCCCCTTTGATCTG  350

seq1  CAAACTTTTGGGGTCAAAGAGAGAAATATATATGCAAGAAGATGCTTGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTGGGGTCAAAGAGAGAAATATATATGCAAGAAGATGCTTGCG  400

seq1  ATGGGACTCAGAGCCCAGCCCTGCTGAATTACTGAGGATCTCAGAAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTCAGAGCCCAGCCCTGCTGAATTACTGAGGATCTCAGAAACAC  450

seq1  ACATGGGGCAATTGAGGAATTTGGAAATAACATATAAAAATGCAGGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGCAATTGAGGAATTTGGAAATAACATATAAAAATGCAGGAAAT  500

seq1  ATTGAAAAGGCAACTTCAAAGACATAGGATTTTATTATAAC-TTTCATCT  547
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGAAAAGGCAACTTCAAAGACATAGGATTTTATTATAACTTTTCATCT  550

seq1  TAGGATGGGGCAGGGGTAAATGGTGCTATGTGAACCCTCTTCCAGACATG  597
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGATGGGGCAGGGGTAAATGGTGCTATGTGAACCCTCTTCCAAACATG  600

seq1  TTGGG  602
      |||||
seq2  TTGGG  605