BAC Information

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BAC

Clone NameB6Ng01-035H10
Chromosome1 (Build37)
Map Location 112,255,661 - 112,256,694
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H10.bB6Ng01-035H10.g
ACCDH863919DH863920
length1,1281,014
definitionDH863919|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H10, 5' end.DH863920|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgtggtctgtggtttgtatcttgggtattctgagcttctgag
ctaatatccacttatcagtgagtgcataccatatgtgttcttttcgtgat
tgtgttacttctctcgggatgatattttctagttccatccatttgccaaa
caatttcatgaagtcattttttttaatagctgagtagtactcctttgggt
aaatttaccacattttctgtatccattcctctgttgagcaatatctcttt
atttccagcttctggctattataaataaggctgctatgaacagagtgaag
catgtatccttattacatgttggagcatcctctgggtatatggccaggag
tggtattgttgggtcctcaggtagtactatatccaattttcatagaaact
gccaaactgatttcgagagtggttgtgccagcttgcaatcccaccagcaa
tgcagggtgttcctccttttccacaccctcaccaggatctgctatcacct
gagttttagatcttagccattttgactggtgtgagatggaatttcagggt
tgttttgatttgcatttccctgatgactaaggatgttgaacatttctgta
ggtgcttttcagccattttgtagtcctcactttagaattctttggttagc
tctgtatcccatttattaataaggttatttgggtctctggagtctaacgt
caattctttgtatatattggattttagttctaataccaatactcctcaaa
ctagtccacaaaatagaaacagaacgtactttacccaattcgtctatgaa
tcacatactctgatacctaaacacacaagacccacagagaagagaaatca
gacactccctatgatatgatgagaatactcataaatctcacaacgatcag
accatcaaatgatcatcatcatgatcagtagatcatcgaatcaggatggt
catattcagaatcatcacatatcaatctagacactaaaacaacacatgtc
atcatagcgctgaaagcatgaccatcaatcctcagtaagctgatgtacga
tagcatccatgagcatacgacaggcatacttaggatgagttatacgtacg
tactctcagactcgatgcggattacaag
gaattcaatggaggagtgttcctctttctccacatcctcaccagcaagtc
ctgtcacctgagttttttagtttagatataatttccttccttccttcctt
ccttccttccttccttccttcctttctttctttctttctttctttctttc
tttcttttgttgttgttgtttggtttgtttttgtttcttgacacagggtt
tctctgtgtgttgccctgactgtcctggaactcactttgtagaccagact
ggcatcgaactcagaaatatgcctgcctcttcctcccgagtgctgggatt
aaaggcgtgtgccaccacactcggctagatataatttcttatgtggaagg
taagaatgaaatatatttgatctttgaatggcttctgatttccatttaga
agtacaaaattcatgtgcaagtatcattagagctattatttttacttgca
gttacctttgtccttagcagatccaagggaatgaagaggtaaaaacttta
catgtaaaatgtaatagtagatggtatacaatttagccagattcgcttga
gccacatgctgaaaatgttcttgtgaaaatgaacattttttttttaaatt
cagagatctcatttgtgccacatcatctgggaagagaataccaaaacaac
atatgtttactaaaaaagaaatgttgagaattttcaattacaaattaata
taataattaagtacaaacacttatatgaaacaatgaaggaccaaaaagtt
ttacattttaaactcctaaaattaattctagttctaagttcaaaaaaata
cttatgtggccttttatataagttttttgtgttgcatgaatacaagttac
cttataaacttatatgcattatttttgattcagaaactagctgttgaact
agcattttatattcagctgctgctaaatatgtgaataaactagaagaacc
atttatcagtgcatttttttcccagctcttttcagagaactagtcaaaat
ttctcaaggttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112255661_112256694
seq2: B6Ng01-035H10.g_65_1078 (reverse)

seq1  TTTAACTTTGAGAATATTTGGACTAGTTCTACTGACAAGAGCTGAGAAAA  50
      |||||| ||||||| |||| |||||||||| |||| |||||||| | |||
seq2  TTTAACCTTGAGAA-ATTTTGACTAGTTCT-CTGAAAAGAGCTG-GGAAA  47

seq1  AAAATGCACTGATAAATTGGTTTCTTCTTAGTTTATATCACCATATTTAG  100
      |||||||||||||||||  | |||||| |||||||| ||| |||||||||
seq2  AAAATGCACTGATAAAT--GGTTCTTC-TAGTTTAT-TCA-CATATTTAG  92

seq1  CAGCAGCTGAATATTAAAATGCTAGTTTCATACAGCTAGTTTTCTGAATT  150
      ||||||||||||| ||||||||||| |||| |||||||| ||||||||| 
seq2  CAGCAGCTGAATA-TAAAATGCTAG-TTCA-ACAGCTAG-TTTCTGAAT-  137

seq1  CCAAAATATAATGCATATAAGTTTTATAAGGTAACTTGTATTTCATTGCA  200
       ||||| |||||||||||||| |||||||||||||||||| |||| ||||
seq2  -CAAAA-ATAATGCATATAAG-TTTATAAGGTAACTTGTA-TTCA-TGCA  182

seq1  ACACAATAAAACTTATATAAAAGGCCACATAAGTATTTTTTTGAACTTAG  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAA-AAAACTTATATAAAAGGCCACATAAGTATTTTTTTGAACTTAG  231

seq1  AACTAGAATTAATTTTAGGAGTTTAAAATGTAAAACTTTTTGGTCCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAATTAATTTTAGGAGTTTAAAATGTAAAACTTTTTGGTCCTTCA  281

seq1  TTGTTTTCATATAAGTGTTTGTACTTAATTATTATATTAATTTGTAATTG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTCATATAAGTGTTTGTACTTAATTATTATATTAATTTGTAATTG  330

seq1  AAAATTCTCAACATTTCTTTTTTAGTAAACATATGTTGTTTTGGTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAACATTTCTTTTTTAGTAAACATATGTTGTTTTGGTATTCT  380

seq1  CTTCCCAGATGATGTGGCACAAATGAGATCTCTGAATTTAAAAAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGATGATGTGGCACAAATGAGATCTCTGAATTTAAAAAAAAAAT  430

seq1  GTTCATTTTCACAAGAACATTTTCAGCATGTGGCTCAAGCGAATCTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTCACAAGAACATTTTCAGCATGTGGCTCAAGCGAATCTGGCT  480

seq1  AAATTGTATACCATCTACTATTACATTTTACATGTAAAGTTTTTACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATACCATCTACTATTACATTTTACATGTAAAGTTTTTACCTCT  530

seq1  TCATTCCCTTGGATCTGCTAAGGACAAAGGTAACTGCAAGTAAAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTTGGATCTGCTAAGGACAAAGGTAACTGCAAGTAAAAATAAT  580

seq1  AGCTCTAATGATACTTGCACATGAATTTTGTACTTCTAAATGGAAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAATGATACTTGCACATGAATTTTGTACTTCTAAATGGAAATCAG  630

seq1  AAGCCATTCAAAGATCAAATATATTTCATTCTTACCTTCCACATAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCAAAGATCAAATATATTTCATTCTTACCTTCCACATAAGAAA  680

seq1  TTATATCTAGCCGAGTGTGGTGGCACACGCCTTTAATCCCAGCACTCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTAGCCGAGTGTGGTGGCACACGCCTTTAATCCCAGCACTCGGG  730

seq1  AGGAAGAGGCAGGCATATTTCTGAGTTCGATGCCAGTCTGGTCTACAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGCAGGCATATTTCTGAGTTCGATGCCAGTCTGGTCTACAAAG  780

seq1  TGAGTTCCAGGACAGTCAGGGCAACACACAGAGAAACCCTGTGTCAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGTCAGGGCAACACACAGAGAAACCCTGTGTCAAGAA  830

seq1  ACAAAAACAAACCAAACAACAACAACAAAAGAAAGAAAGAAAGAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAACCAAACAACAACAACAAAAGAAAGAAAGAAAGAAAGAAA  880

seq1  GAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  930

seq1  AAATTATATCTAAACTAAAAAACTCAGGTGACAGGACTTGCTGGTGAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATCTAAACTAAAAAACTCAGGTGACAGGACTTGCTGGTGAGGA  980

seq1  TGTGGAGAAAGAGGAACACTCCTCCATTGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAAAGAGGAACACTCCTCCATTGAATTC  1014