BAC Information

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BAC

Clone NameB6Ng01-035L14
Chromosome1 (Build37)
Map Location 61,924,664 - 62,058,187
singlet/doubletdoublet
Overlap genePard3b
Upstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L14.bB6Ng01-035L14.g
ACCDH864117DH864118
length922978
definitionDH864117|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L14, 5' end.DH864118|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,924,664 - 61,925,598)(62,057,168 - 62,058,187)
sequence
gaattctgcagttctagagtaagtgaattttttacagtattctgacaatt
tgttttttacccattgtggatggttgcttattgttttttattttcattat
cctttgaacttgatttatgacgagcatcaacacatagcaaaatgaataat
atcattcacttgaaacctactccgtgactgcattaaaattattaatgcac
gataaaaatactctgagcaatagactactgattattaagaatggcgtggg
aatgaggctctattctgcatccaatttactgtgactgaatcttgtgtcat
taacgttgtaaggaacttcttcgtggaggacagctcgactgattttgtat
ctactttcagggaataaattcaatgaaaacttgtgtgcgaggaatgatga
ctttgggactaatgcattttcctacttttctgatctctatgtacatgaga
tcgctgagcctaagcagtgtccagctctgttctcttccctcgctctccag
tctgtatttcacacctacccaggggcttggaaactttgccttctggttcc
ccaatgcattgggccaattggagagttccagaaggagccggaagaacaat
gttaccttagcaaacatgttcaagagtcacctcgtactgctgtaatataa
aatgattaaatattgataacacccttttcctcgtagaaacagaattattt
tatccgtctgcttagatacccctctgtgtgtgaaaaactcatgaaaatta
aggttatttctttcatttttgcttttactgacttgaacattcgcctattg
cctttagtctgctgccgtgagggtctctgactttcctagtggctgactct
gtgctgctctttgatcagataaaactaaaactgcagctatctgggtagac
atgtagcaaagcatgatcgtgt
gaattctctatgtaaacagactggctttgatcttttatatcttgctgcca
ctgactcctggttcctgtttctaaagacgtgcattaacatgtaggccaac
acctcctgatgaatttctaatgatggggaaggatgctatgcattattttt
acccacttctatttcctattaatgggtgtgtgtgttacgtttgtacatgc
ataccaagatatttcatgggaagtcacaggacaacttgaaagatttggtt
ttttacttcgacctttgggtcctagaaagatacctctggtctttgtgatt
gaggcggttattattacccccaccttaatgcatgttctaattcaccaaaa
aattgattccttttgagaagtggggactgtttctgtccttctgacctgcc
aatacttttaaatatttctggcatcattttctgctaggattatgttcaca
actggcccaaacttaatatactttacataggaacaattaatgggtcgtgg
aaagtgacacattattagatggacttaaacttatttctaagaagtatcaa
caaaaacagacaggtgaggaatagtatttgacagacacctcagaagaatg
cctcttcctttcctacacttttgaaacaaatattatgccaaaggattctg
gataaaccaccagataaactgttctcttttttggaaacaaaatcagtgat
ttcaaactaactccccaactgttttctcaatgtctacatatatatgagaa
aaccaggatgactaagatataaatggaaccttattctagtgtgatgcctg
ggtaacccttagcttttcagacgaaactttataaacatagtgatgcttct
ggaaacgacatctcattgctcagtctgactccaggtgatttgaggggcat
gcatggagtcacttcattcagatactgcatctctactgagctcagcgcag
aagaagctaggaaagacttaggtgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61924664_61925598
seq2: B6Ng01-035L14.b_43_964

seq1  GAATTCTGCAATTCATGAGTAATTGAATTTTTTAAAGTATTATGACAGAA  50
      |||||||||| |||  |||||| ||||||||||| |||||| |||||   
seq2  GAATTCTGCAGTTCTAGAGTAAGTGAATTTTTTACAGTATTCTGACAATT  50

seq1  AGTTTAAGAGCCATTGTGGATGGTTACATATTGTTTTATGAAAAAAATTA  100
       ||||   | ||||||||||||||| | ||||||||| | |     ||||
seq2  TGTTTTTTACCCATTGTGGATGGTTGCTTATTGTTTT-TTATTTTCATTA  99

seq1  ACATTTGAACTTAATTTATGACATGTAGCAGTAAATACAGAGATGAAGAA  150
       | ||||||||| |||||||||  | | ||  | |||   | ||||| ||
seq2  TCCTTTGAACTTGATTTATGACGAGCATCAACACATAGCAAAATGAATAA  149

seq1  TATGATTTACTTATAGCCTAGTAGGTGCATACATAAATATAATTAATGCA  200
      ||| ||| ||||  | |||| |  |||  | ||| || || |||||||||
seq2  TATCATTCACTTGAAACCTACTCCGTGACTGCATTAAAATTATTAATGCA  199

seq1  GGATAAAAATAATCTGAGCAATAGACTACTGATTATTAAGAAAGGCGTGG  250
       |||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CGATAAAAATACTCTGAGCAATAGACTACTGATTATTAAGAATGGCGTGG  249

seq1  GTATGAGCCAAGATTCTGCATCCTATTTACTGTGACTGAGTCTTGTGTCA  300
      | ||||| |   ||||||||||| ||||||||||||||| ||||||||||
seq2  GAATGAGGCTCTATTCTGCATCCAATTTACTGTGACTGAATCTTGTGTCA  299

seq1  TTAACGTTGAAAAAAACTAAGAGGTAGGAGGACAGCGGGACTGATTTAAA  350
      ||||||||| ||  ||||     || ||||||||||  |||||||||   
seq2  TTAACGTTGTAAGGAACTTCTTCGT-GGAGGACAGCTCGACTGATTTTGT  348

seq1  ATCTACAAAGAGGGAATAAATACAATGAAAACTTGAAAAGGAGGAATGAT  400
      ||||||    ||||||||||| |||||||||||||     ||||||||||
seq2  ATCTACTTTCAGGGAATAAATTCAATGAAAACTTGTGTGCGAGGAATGAT  398

seq1  GTTTCAGGGACTAAAGCATTTTCCTACTTATCTGATCTCTAAGTACAAGA  450
      |  |  |||||||| |||||||||||||| ||||||||||| ||||| ||
seq2  GACTTTGGGACTAATGCATTTTCCTACTTTTCTGATCTCTATGTACATGA  448

seq1  GATCGCTGAGCCAAAGCAGTGTCCAGCTCTGTTCTCTTCCCTCGCTCTCC  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATCGCTGAGCCTAAGCAGTGTCCAGCTCTGTTCTCTTCCCTCGCTCTCC  498

seq1  AGTCTGTATTTCACACCTACCCAGGGGCTTGGAAACTTTGCCTTCTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATTTCACACCTACCCAGGGGCTTGGAAACTTTGCCTTCTGGTT  548

seq1  CCCCAATGCATTGGGCCAATTGGAGAGTTCCAGAAGGAGCCGGAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGCATTGGGCCAATTGGAGAGTTCCAGAAGGAGCCGGAAGAACA  598

seq1  AGGTTACCTTAGCAAACATGTTCAAGAGTCACCTCGTACTGCTGTAATAT  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCTTAGCAAACATGTTCAAGAGTCACCTCGTACTGCTGTAATAT  648

seq1  AAAAATGATTAAATATTGATAACACCCTTTTCCTCGTAGAAACAGAATTA  700
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAATGATTAAATATTGATAACACCCTTTTCCTCGTAGAAACAGAATTA  697

seq1  TTTTATCCGTCTGCTTAGTTCCACCTCTGTGTGTGAAAAACTCATGAAAA  750
      |||||||||||||||||| | | |||||||||||||||||||||||||||
seq2  TTTTATCCGTCTGCTTAGATACCCCTCTGTGTGTGAAAAACTCATGAAAA  747

seq1  TTAAGGTTATTTCTTTCATTTTTGCTTTTACTGACTTGAACATTCGCCTT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAAGGTTATTTCTTTCATTTTTGCTTTTACTGACTTGAACATTCGCC-T  796

seq1  ATTGCCTTTAGTTCTGCTGCCGTGAGGGTCTCTGACTTTCCTAGTGGTTG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  ATTGCCTTTAG-TCTGCTGCCGTGAGGGTCTCTGACTTTCCTAGTGGCTG  845

seq1  ACTTCTGTGCCTGCTCTTTGATCAGATAAAAACTAAAAACTGCAGCTATC  900
      || |||||| ||||||||||||||||| |||||| |||||||||||||||
seq2  AC-TCTGTG-CTGCTCTTTGATCAGAT-AAAACT-AAAACTGCAGCTATC  891

seq1  TGGGTAGAAAATGTAACCAAAGCCATGATCCGTGT  935
      ||||||| | |||| | ||||| |||||| |||||
seq2  TGGGTAG-ACATGT-AGCAAAG-CATGAT-CGTGT  922

seq1: chr1_62057168_62058187
seq2: B6Ng01-035L14.g_66_1043 (reverse)

seq1  TTGTCACCTAAGTTCTTTTCCTAAGGCTCTCTTCTGCTGCTGGAGCTCAG  50
      |||||||||||||   |||||||  ||| |||||||| ||| ||||||| 
seq2  TTGTCACCTAAGT--CTTTCCTA--GCT-TCTTCTGC-GCT-GAGCTCA-  42

seq1  GTAAGGAGATGCAGTTATCTTGAACTGAAGGTGACTTCCAATTGCATGCC  100
      |||  ||||||||| |||| |||| |||| ||||| ||||  ||||||||
seq2  GTA--GAGATGCAG-TATC-TGAA-TGAA-GTGAC-TCCA--TGCATGCC  83

seq1  CCTCAAAAATCACACTGGGAGTCAGACTGAGCAATGAGGCTGGTCTGTTT  150
      ||||  ||||||| || |||||||||||||||||||||    ||| ||||
seq2  CCTC--AAATCAC-CT-GGAGTCAGACTGAGCAATGAG--ATGTC-GTTT  126

seq1  CCAAGAAGCATCACTATGTTTATAAAGTTTATCGTCTGGAAAAAGCTAAG  200
      || ||||||||||||||||||||||||||  |||||||  ||||||||||
seq2  CC-AGAAGCATCACTATGTTTATAAAGTT--TCGTCTG--AAAAGCTAAG  171

seq1  GGTTACCAAGGCATTCACACTAGAAATAAGGTTCCATTTATATCTTAGTC  250
      ||||||| ||||| ||||||||| ||||||||||||||||||||||||||
seq2  GGTTACCCAGGCA-TCACACTAG-AATAAGGTTCCATTTATATCTTAGTC  219

seq1  ATCCTGGTTTTCTTCATATATATGGTAGACATTGGAGAAAACAGTTGGGG  300
      |||||||||||| |||||||||| ||||||||| ||||||||||||||||
seq2  ATCCTGGTTTTC-TCATATATAT-GTAGACATT-GAGAAAACAGTTGGGG  266

seq1  AGTTAGTTTTGAAATCACCTGATTTTTGTTTTCCAAAAAAGAGAACAGTT  350
      |||||| |||||||||| ||||||||   |||||||||||||||||||||
seq2  AGTTAG-TTTGAAATCA-CTGATTTT--GTTTCCAAAAAAGAGAACAGTT  312

seq1  TATCTGGTGGTTTTATCCAGAATCCTTTGGCATAATATTTGTTTCAAAAG  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTGG-TTTATCCAGAATCCTTTGGCATAATATTTGTTTCAAAAG  361

seq1  TGTAGGAAATGGAAGAGGCATTCTTCTGAGGTGTCTGTCAAATACTATTC  450
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAAA-GGAAGAGGCATTCTTCTGAGGTGTCTGTCAAATACTATTC  410

seq1  CTCACCTGTCTGTTTTTGTTGATACTTCTTAGAAATAAGTTTAAGTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGTCTGTTTTTGTTGATACTTCTTAGAAATAAGTTTAAGTCCAT  460

seq1  CTAATAATGTGTCACTTTCCACGACCCATTAATTGTTACTATGTAAAGTA  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAATAATGTGTCACTTTCCACGACCCATTAATTGTTCCTATGTAAAGTA  510

seq1  TATTCTGTTTGGGCCAGTTGTGAACATAATATT--CTGAATGTGCTGACT  598
      ||||  ||||||||||||||||||||||||  |  | |||  || || | 
seq2  TATTAAGTTTGGGCCAGTTGTGAACATAATCCTAGCAGAAAATGATG-CC  559

seq1  AGAACTTATTTAACTTAATTCTCACGTCAGAAGGACAGAAACAGTCCCCA  648
      ||||  |||||||    |||  || |||||||||||||||||||||||||
seq2  AGAA-ATATTTAAAAGTATTGGCAGGTCAGAAGGACAGAAACAGTCCCCA  608

seq1  CTTCTCAAAAGGAATCAATTTTTTCGTAAAGTAGAACATGCACTAAGGTT  698
      |||||||||||||||||||||||| || || ||||||||||| |||||| 
seq2  CTTCTCAAAAGGAATCAATTTTTTGGTGAATTAGAACATGCATTAAGGTG  658

seq1  GGGGTAATAAAAACCCTGTCAATCACAATGACCAGAGGTATATTCCTAGG  748
      |||||||||| ||||   |||||||||| |||||||||||| || |||||
seq2  GGGGTAATAATAACCGCCTCAATCACAAAGACCAGAGGTATCTTTCTAGG  708

seq1  ACCCAAAGGTAGAAGGAAAAAACCAACTCTTTCAAGTTGTCCTCTGACTT  798
      |||||||||| |||| |||||||||| |||||||||||||||| ||||||
seq2  ACCCAAAGGTCGAAGTAAAAAACCAAATCTTTCAAGTTGTCCTGTGACTT  758

seq1  CCACTGATATATCTTGGAATGCATGTACAAATGTATACACACACACCCAT  848
      ||  ||| ||||||||| ||||||||||||| ||| ||||||||||||||
seq2  CCCATGAAATATCTTGGTATGCATGTACAAACGTA-ACACACACACCCAT  807

seq1  TAATAGGAAATATTTAAAT-TGTAAAAATAATGCATAGCATCTTTCCCCC  897
      ||||||||||||   || |  ||||||||||||||||||||| |||||| 
seq2  TAATAGGAAATA--GAAGTGGGTAAAAATAATGCATAGCATCCTTCCCCA  855

seq1  TCATTTGAAATTCAATATTTGCTGTTGGCCTCTATGTTAATGCATGTCTT  947
      ||||| ||||||||  |   | |||||||||  ||||||||||| |||||
seq2  TCATTAGAAATTCATCAGGAGGTGTTGGCCTACATGTTAATGCACGTCTT  905

seq1  TAATTGCAGGACTCAGGAGTCAGTGGCAGCTAGATATCTGAGATCAAAGC  997
      ||    |||||  ||||||||||||||||| ||||||   ||||||||||
seq2  TAGAAACAGGAACCAGGAGTCAGTGGCAGCAAGATATAAAAGATCAAAGC  955

seq1  CAGTCTGTCTACATAGTGAATTC  1020
      |||||||| ||||||| ||||||
seq2  CAGTCTGTTTACATAGAGAATTC  978