BAC Information

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BAC

Clone NameB6Ng01-035O13
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,224 - 41,059,737111,467,195 - 111,467,785
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O13.bB6Ng01-035O13.g
ACCDH864252DH864253
length510593
definitionDH864252|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O13, 5' end.DH864253|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(111,467,195 - 111,467,785)
sequence
tttgttcagctctgagctccattttttaatggggttatttgattttctgg
agtccaccttcttgagttctttttatatattggatattagtcccctatac
gatttgggataggtaaagatactttcccaatctgttggtggcctttttgt
tttattgatgatgtcttttgctttgcagaagctttgcaattttatgaggt
cccatttatcgattcttgattttacagcacaagccattgctgttctattc
aggaattttcccctctacccatatcttcgaggcttttccctactttctcc
tctataagtttcagtgtctctggttttatgtggagttccttaatccactt
agatttgaccttagtacaaggagatagaaatggatcaattcgcattcttc
taaatgataaccgccagttgtgccagcaccatttgttgaaaatgctgtct
ttttttccactggatggttttagctcccttgtcaaagatcaagtgaccat
aggtgtgtgg
gaattcctcttgggaggcaggtgaacatgtgggatagggagtggtgttca
accaaaaaacttaatagggcattcctagaagagatttacatattatgtaa
aagatctttgaacaaataccagagaacataaggatatagagcctcataca
tgtgcacttatatgttcactgtactcatacatgtgcactgtaaaagctta
aatataaatcactgaacatgttatgtgtgggcaataatgtgaaaaagtgg
gacttgttcggaattgcttattgtgttgaaaaattatataattacttgga
aatcaaagtgacatttccttaaaggagtgatttctacatatctacaggat
tataattttagcatttcttctaggttccgaacaacagttagatggcaaca
accaggtaggcatgacttgttataaaagggaatgtttagcctctttggtc
tctctgatgttttcctctctctgacccttttctctttcttcctctctttt
cctttcccttccccctctccacatgtttctcatctctctctgtctctctt
tgtatctctctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-035O13.b_48_562 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCA  50

seq1  GTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTG  99
      |||| ||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGG  100

seq1  TTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAA  149
      ||||||| |||||||||||||||||||||| | |||||||||||||||||
seq2  TTATCATTTAGAAGAATGCGAATTGATCCATTTCTATCTCCTTGTACTAA  150

seq1  GGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGA  199
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGA  200

seq1  AACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGG  249
      ||||||||||||||||||| ||||||||||| ||||||||||  | ||||
seq2  AACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTAGAGGG  250

seq1  GAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
      | |||||||||| ||||||||||||||||||||||||||| ||  |||||
seq2  G-AAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAAATCAAGAAT  299

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
       || |||||||||||||| ||| |||||||||||||||| ||||||||||
seq2  CGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACA  349

seq1  CCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACC  398
       | ||||||| ||||||||| ||||||||||||||||||| |||||||||
seq2  TCATCAATAAAACAAAAAGGCCACCAACAGATTGGGAAAGTATCTTTACC  399

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      ||||| |||||  |||||||||||||||||||||||||  ||||||||||
seq2  TATCCCAAATCGTATAGGGGACTAATATCCAATATATAAAAAGAACTCAA  449

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGAGCTCAG  499

seq1  AGCTAAACAAAGAATT  514
      |||| |||||||||||
seq2  AGCTGAACAAAGAATT  515

seq1: chr1_111467195_111467785
seq2: B6Ng01-035O13.g_70_662

seq1  GAATTCCTCTTGGGAGGCAGGTGAACATGTGGGATAGGGAGTGGTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGGAGGCAGGTGAACATGTGGGATAGGGAGTGGTGTTCA  50

seq1  ACCAAAAAACTTAATAGGGCATTCCTAGAAGAGATTTACATATTATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAACTTAATAGGGCATTCCTAGAAGAGATTTACATATTATGTAA  100

seq1  AAGATCTTTGAACAAATACCAGAGAACATAAGGATATAGAGCCTCATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTTTGAACAAATACCAGAGAACATAAGGATATAGAGCCTCATACA  150

seq1  TGTGCACTTATATGTTCACTGTACTCATACATGTGCACTGTAAAAGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTTATATGTTCACTGTACTCATACATGTGCACTGTAAAAGCTTA  200

seq1  AATATAAATCACTGAACATGTTATGTGTGGGCAATAATGTGAAAAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATCACTGAACATGTTATGTGTGGGCAATAATGTGAAAAAGTGG  250

seq1  GACTTGTTCGGAATTGCTTATTGTGTTGAAAAATTATATAATTACTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTTCGGAATTGCTTATTGTGTTGAAAAATTATATAATTACTTGGA  300

seq1  AATCAAAGTGACATTTCCTTAAAGGAGTGATTTCTACATATCTACAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTGACATTTCCTTAAAGGAGTGATTTCTACATATCTACAGGAT  350

seq1  TATAATTTTAGCATTTCTTCTAGGTTCCGAACAACAGTTAGATGGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTAGCATTTCTTCTAGGTTCCGAACAACAGTTAGATGGCAACA  400

seq1  ACCAGGTAGGCATGACTTGTTATAAAAGGGAATGTTTAGCCTCTTTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAGGCATGACTTGTTATAAAAGGGAATGTTTAGCCTCTTTGGTC  450

seq1  TCTCTGATGTTTTCCTCTCTCTGACCCTTTTCTCTTTCTTCCTCTC-TTT  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCTGATGTTTTCCTCTCTCTGACCCTTTTCTCTTTCTTCCTCTCTTTT  500

seq1  CCTTTCCCTTCCCCCTCTCCACATG-TTCTCATCTCTCTCTGTCTCTCTT  548
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTTTCCCTTCCCCCTCTCCACATGTTTCTCATCTCTCTCTGTCTCTCTT  550

seq1  TGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  591
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  593