BAC Information

Click to search

BAC

Clone NameB6Ng01-036A13
Chromosome1 (Build37)
Map Location 50,993,459 - 50,994,553
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A13.bB6Ng01-036A13.g
ACCDH864339DH864340
length5081,072
definitionDH864339|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A13, 5' end.DH864340|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctacaccccatttttaatagggttatttgtttttctgga
gtcaaacttcttgagttcttcatatatatattggatattatccccctatc
agatttaggattggtaaagatattttccaaatatgttggttgtcttttgg
tcttattgacagtgtcctttgccttacagaagctttgcaattttatgaag
ttccatttgtcgattcttgatcttacagcacaagccattggtgttctgtt
ccagaatttttcccctatgcccatatcttcgaggctcttcccctctttct
cctctataagtttcagtgtctttagttttatgtggagttcttggatccac
ttagatttgagctttgtacaaggagataagaatggatcaatttgcatttg
tctacattctaaccaccagttgacacagcaccatttgttgaagatgctgt
cttctttccactgggtggttttagttcatttttcaaagatcaagtgacca
tagatgtt

gaattcttaatcttgataaattgaggaatatttagataagatgaattttt
cttattaccttttatcattgtctttggatattgataaagacaaagtatta
gaagcaagagataaccttcatatcaaacttgttgaatatcccaaactatc
acgtttgagatatgtgtttgagaaagagaaatgctcatttttagaatagc
ctcattaccaaaaacctacatatctttacaatggaaattagacaacctac
tgggtacagccatcatattataatcacactctaaggcattagagatactt
ggctgtgtcctatacatgctaattaaaccaggatgtgattatctgctgat
tactactactgatgcacttcattgtttaattataacaaatgaaatgatca
agatgattatttatcaaggcttgcctatgccagaaacacaataaagaaaa
ccatgcatgcagatacatgtgaaaatgcttttctgtttactactgttaat
taaaatgtttgaatttttgacgtgctagaaatttacaattcatgcaaaat
aaatcagcaacctatccaggtagcaaggaaaaattttaatgttcatgtct
atattttatgtctatcacatgtaaattttaactcaaggattttgacaaag
aacaaaaaataaaactggcataaagtaagaatttaattgacaaaaccttg
agacgtattttttatgccgtaatttcttacattatctgtgcccttttatt
cacaatagcctatttaatcctctttcttacttttacataataagagctta
gtcatcctgaaaacttatccatttatgtacttatttgtatatgtgtacat
ttgtgcatgtgcttgctgactctgtatgggtttgtgcctatgtgtagagg
cagatgttgacatcagctgtcttctcaatcacttctcatctttgttgagt
caagcttcccctgagttggagtccagatcaaccaaatccacagatctgcc
tgtctagaaagctctgtgactcttgtctgccctccatgctgtacatggga
gtgcactgtcaccccatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50993459_50994553
seq2: B6Ng01-036A13.g_69_1140 (reverse)

seq1  AAAATATGGGTGTGACAGTGCACTTCCATGATTACAGCATGGAGAGGCAG  50
      |||||||||| ||||||||||||| |||||  |||||||||||| |||||
seq2  AAAATATGGG-GTGACAGTGCACTCCCATG--TACAGCATGGAG-GGCAG  46

seq1  GAACAAGAGGGTCACAGGAGCTTTCTAGACAGGCAGAATCTGTTGAATTT  100
        ||||||  |||||| ||||||||||||||||||| ||||| || ||||
seq2  --ACAAGA--GTCACA-GAGCTTTCTAGACAGGCAG-ATCTG-TGGATTT  89

seq1  GGTTGAATCTGGGAACTCCAAACTCAGGGGGAAGCCTTGACTCAAACAAA  150
      ||||| ||||||  ||||| |||||| ||||||| |||||||| ||||||
seq2  GGTTG-ATCTGG--ACTCC-AACTCA-GGGGAAG-CTTGACTC-AACAAA  132

seq1  GATGAAGAAGTGATTGAGAAAGACAGCTGATGTCAACATCTGGCCTCTAC  200
      |||| ||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GATG-AGAAGTGATTGAG-AAGACAGCTGATGTCAACATCT-GCCTCTAC  179

seq1  ACATAGGCACAAACCCATACAAGAGTCAGCAAGCACATGCACAAATGTAC  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATAGGCACAAACCCATAC-AGAGTCAGCAAGCACATGCACAAATGTAC  228

seq1  ACATATACAAAATAAGTACATAAATGGATAAGTTTTCAGGATGACTAAGC  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAC-AAATAAGTACATAAATGGATAAGTTTTCAGGATGACTAAGC  277

seq1  TCTTATTATGTAAAAGTAAGAAAGAGGATTAAATAGGCTATTGTGAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTATGTAAAAGTAAGAAAGAGGATTAAATAGGCTATTGTGAATAA  327

seq1  AAGGGCACAGATAATGTAAGAAATTACGGCATAAAAAATACGTCTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAGATAATGTAAGAAATTACGGCATAAAAAATACGTCTCAAGG  377

seq1  TTTTGTCAATTAAATTCTTACTTTATGCCAGTTTTATTTTTTGTTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAATTAAATTCTTACTTTATGCCAGTTTTATTTTTTGTTCTTTG  427

seq1  TCAAAATCCTTGAGTTAAAATTTACATGTGATAGACATAAAATATAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCCTTGAGTTAAAATTTACATGTGATAGACATAAAATATAGACA  477

seq1  TGAACATTAAAATTTTTCCTTGCTACCTGGATAGGTTGCTGATTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTAAAATTTTTCCTTGCTACCTGGATAGGTTGCTGATTTATTTT  527

seq1  GCATGAATTGTAAATTTCTAGCACGTCAAAAATTCAAACATTTTAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAATTGTAAATTTCTAGCACGTCAAAAATTCAAACATTTTAATTAA  577

seq1  CAGTAGTAAACAGAAAAGCATTTTCACATGTATCTGCATGCATGGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAAACAGAAAAGCATTTTCACATGTATCTGCATGCATGGTTTTC  627

seq1  TTTATTGTGTTTCTGGCATAGGCAAGCCTTGATAAATAATCATCTTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGTTTCTGGCATAGGCAAGCCTTGATAAATAATCATCTTGATC  677

seq1  ATTTCATTTGTTATAATTAAACAATGAAGTGCATCAGTAGTAGTAATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTGTTATAATTAAACAATGAAGTGCATCAGTAGTAGTAATCAG  727

seq1  CAGATAATCACATCCTGGTTTAATTAGCATGTATAGGACACAGCCAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATCACATCCTGGTTTAATTAGCATGTATAGGACACAGCCAAGTA  777

seq1  TCTCTAATGCCTTAGAGTGTGATTATAATATGATGGCTGTACCCAGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATGCCTTAGAGTGTGATTATAATATGATGGCTGTACCCAGTAGG  827

seq1  TTGTCTAATTTCCATTGTAAAGATATGTAGGTTTTTGGTAATGAGGCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATTTCCATTGTAAAGATATGTAGGTTTTTGGTAATGAGGCTAT  877

seq1  TCTAAAAATGAGCATTTCTCTTTCTCAAACACATATCTCAAACGTGATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATGAGCATTTCTCTTTCTCAAACACATATCTCAAACGTGATAG  927

seq1  TTTGGGATATTCAACAAGTTTGATATGAAGGTTATCTCTTGCTTCTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATATTCAACAAGTTTGATATGAAGGTTATCTCTTGCTTCTAATA  977

seq1  CTTTGTCTTTATCAATATCCAAAGACAATGATAAAAGGTAATAAGAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTTATCAATATCCAAAGACAATGATAAAAGGTAATAAGAAAAA  1027

seq1  TTCATCTTATCTAAATATTCCTCAATTTATCAAGATTAAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTATCTAAATATTCCTCAATTTATCAAGATTAAGAATTC  1072


| Home | SequenceCutter | Blast | Download |