BAC Information

Click to search

BAC

Clone NameB6Ng01-036F14
Chromosome1 (Build37)
Map Location 75,362,487 - 75,483,957
singlet/doubletdoublet
Overlap geneDes, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
Upstream genePnkd, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep
Downstream geneAW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F14.bB6Ng01-036F14.g
ACCDH864553DH864554
length917800
definitionDH864553|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F14, 5' end.DH864554|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,362,487 - 75,363,414)(75,483,154 - 75,483,957)
sequence
gaattcactaatgatacattaggagagcaagtcggagatcttggcagcgt
ctcctttcctagatcaaaccttttatatcttcgatgttcatttccatcag
gaaaaatacacgctgtgctccatcgagtcaaacgttcattacagcctagt
tgcttgctaagggactcatgagcgccaaactcctgacaccacggaactaa
atgtgacccccactatgaaaactcagatttcttttttcacttatttgttt
attcagataccaagtatgtgttctgcatataaaatcacttttgctgcgga
tcagcagctctgagacagaataagtggactatcatggctgctacttccca
gagaggaaactgaggcacaggagggactagctcctgcatcattaagacat
taaacagctcatcctggagcctctaggttcctccagcaggtctataggcc
tgggctttgaggtcctgtcttagatgagagtccacggatataaactcacc
attcaggactcttctgaaaatctggaggtggagagagagcaaggcaggat
aggaaacatgaatactgttcccgggccttgggtcccctgctatcctgtac
caacacacagcacaatctttttggctcttgaagccattcctctagcaaga
ctggtccctctctctataaatcatctgttgggtgctgggttccaggatga
tgtctcaaagaagtcagacagttgtcataagaaaggtgaaagtcagctag
cacttggagcatgcagcctggggtggatttcagtcatggtgcagcttagt
atgaacctgccaggctcatatgagcatggggtgggtctattacagaaacc
agcccagcaagggttctgaagtcataccaaaagacgtgatgatcaagacc
attgaaaccgggatgga
gaattctcccgggaagcggctgaggcctcaatacctccccacccccaccc
cccagggaagaaacacattctggtgctgagcgagctgagaaccgaggaca
ccggagaagtctgcttccaggcgggacccgcccagtccttggctcggctg
gaggtggagggtaagcttctgaagcaaaggcgacagggaagggcatcatc
gcccatcctgggactgactgactagccaccggtcctagagatgctgctgt
cttcatctctcctctttgaggctctcttggggcaggtcacagagagcagc
tcatttcttcaagaggagatggagaggaagagactttaaactgggcatgc
aggaaaacggactggtggcacggagggcttgtgccaggagtggaggtgtc
gtaggcagggaagatacatctctcctctaggggccgtgcgtgtccttatt
aagcccctgtcccccaaccgcagcgttgcctctccagatgtgccgccgcc
cacctcgtgagaagacggttctggtcaaccgcagggcggtgttggaggtg
actgtgtcccgccctgggggccacgtgtgttggatgcgggagggggtcga
actctgcccgggaaacaagtatgagatgcgtatacacggcaccacccaca
gcctagtcatccatgacgtccgacctgaggaccagggaactacagctgcc
aagcaggccaggactgtgctgacccacgctgctgcaaatggggagaacgc
ctcactgggcagaatccaagggaccagctgaccgtgtacggaggggctac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75362487_75363414
seq2: B6Ng01-036F14.b_44_960

seq1  GAATTCACTAATGATACATTAGGAGAGCAAGTCGGAGATCTTGGCAGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGATACATTAGGAGAGCAAGTCGGAGATCTTGGCAGCGT  50

seq1  CTCCTTTCCTAGATCAAACCTTTTATATCTTCGATGTTCATTTCCATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCTAGATCAAACCTTTTATATCTTCGATGTTCATTTCCATCAG  100

seq1  GAAAAATACACGCTGTGCTCCATCGAGTCAAACGTTCATTACAGCCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACACGCTGTGCTCCATCGAGTCAAACGTTCATTACAGCCTAGT  150

seq1  TGCTTGCTAAGGGACTCATGAGCGCCAAACTCCTGACACCACGGAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTAAGGGACTCATGAGCGCCAAACTCCTGACACCACGGAACTAA  200

seq1  ATGTGACCCCCACTATGAAAACTCAGATTTCTTTTTTCACTTATTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCCCACTATGAAAACTCAGATTTCTTTTTTCACTTATTTGTTT  250

seq1  ATTCAGATACCAAGTATGTGTTCTGCATATAAAATCACTTTTGCTGCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATACCAAGTATGTGTTCTGCATATAAAATCACTTTTGCTGCGGA  300

seq1  TCAGCAGCTCTGAGACAGAATAAGTGGACTATCATGGCTGCTACTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTCTGAGACAGAATAAGTGGACTATCATGGCTGCTACTTCCCA  350

seq1  GAGAGGAAACTGAGGCACAGGAGGGACTAGCTCCTGCATCATTAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAACTGAGGCACAGGAGGGACTAGCTCCTGCATCATTAAGACAT  400

seq1  TAAACAGCTCATCCTGGAGCCTCTAGGTTCCTCCAGCAGGTCTATAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCTCATCCTGGAGCCTCTAGGTTCCTCCAGCAGGTCTATAGGCC  450

seq1  TGGGCTTTGAGGTCCTGTCTTAGATGAGAGTCCACGGATATAAACTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGAGGTCCTGTCTTAGATGAGAGTCCACGGATATAAACTCACC  500

seq1  ATTCAGGACTCTTCTGAAAATCTGGAGGTGGAGAGAGAGCAAGGCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGACTCTTCTGAAAATCTGGAGGTGGAGAGAGAGCAAGGCAGGAT  550

seq1  AGGAAACATGAATACTGTTCCCGGGCCTTGGGTCCCCTGCTATCCTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATGAATACTGTTCCCGGGCCTTGGGTCCCCTGCTATCCTGTAC  600

seq1  CAACACACAGCACAATC-TTTTGGCTCTTGAAGCCATTCCTCTAGCAAGA  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAACACACAGCACAATCTTTTTGGCTCTTGAAGCCATTCCTCTAGCAAGA  650

seq1  CTGGTCCCTCTCTCTATAAATCATCTGTTGGGTGCTGGGTTCCAGGATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCTCTCTCTATAAATCATCTGTTGGGTGCTGGGTTCCAGGATGA  700

seq1  GGTCTCAAAGAAGTCAGACAGTTGTCATAAGAAAGGTGAAAGTCAGCTAG  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAGAAGTCAGACAGTTGTCATAAGAAAGGTGAAAGTCAGCTAG  750

seq1  CACTTGGAGCAATGCAGCCTGGGGTGGATTTCCAGTCATGGTGCAGCTTA  799
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  CACTTGGAGC-ATGCAGCCTGGGGTGGATTT-CAGTCATGGTGCAGCTTA  798

seq1  GGTATGAACCTGGCCAGGCTCATATGAGCATGGGGTGGGTCTATTACAGA  849
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  -GTATGAACCT-GCCAGGCTCATATGAGCATGGGGTGGGTCTATTACAGA  846

seq1  AACCAGCCCCGAGCAAAGGGGTTCTGAAGTCCATACCAAAAAGACAGTGA  899
      |||||||||  |||||  |||||||||||| |||||| ||||||| ||||
seq2  AACCAGCCC--AGCAA--GGGTTCTGAAGT-CATACC-AAAAGAC-GTGA  889

seq1  TGATCAAGACCATTGAGACCCGGGATGGA  928
      |||||||||||||||| | ||||||||||
seq2  TGATCAAGACCATTGA-AACCGGGATGGA  917

seq1: chr1_75483154_75483957
seq2: B6Ng01-036F14.g_68_867 (reverse)

seq1  GTAGCCCCTCC-TGCCCGGTCAGCTTGTTCCTTGTGGATTCTGCCCAGTG  49
      ||||||||||| | | ||||||||| || |||  ||||||||||||||||
seq2  GTAGCCCCTCCGTACACGGTCAGCTGGTCCCT--TGGATTCTGCCCAGTG  48

seq1  -GGCGCTACTCACCATCTACCAGCAGCTGTGTGTCAGCACTGTCCTGGCC  98
       |||| | ||| |||| |  ||||||| ||| |||||||| |||||||||
seq2  AGGCG-TTCTCCCCAT-TTGCAGCAGC-GTGGGTCAGCACAGTCCTGGCC  95

seq1  TGCTTGGCAGCTGTAGGTGCCCTGGTCCTCAGGTCGGACGTCATGGATGA  148
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  TGCTTGGCAGCTGTA-GTTCCCTGGTCCTCAGGTCGGACGTCATGGATGA  144

seq1  CTAGGCTGTGGGTGGTGCCGTGTCTACGCGTCTCATACTTGTTTCCCGGG  198
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CTAGGCTGTGGGTGGTGCCGTGTATACGCATCTCATACTTGTTTCCCGGG  194

seq1  CAGAGTTCGACCCCCTCCCGCATCCAACACACGTGGCCCCCAGGGCGGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCGACCCCCTCCCGCATCCAACACACGTGGCCCCCAGGGCGGGA  244

seq1  CACAGTCACCTCCAACACCGCCCTGCGGTTGACCAGAACCGTCTTCTCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACCTCCAACACCGCCCTGCGGTTGACCAGAACCGTCTTCTCAC  294

seq1  GAGGTGGGCGGCGGCACATCTGGAGAGGCAACGCTGCGGTTGGGGGACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGCGGCGGCACATCTGGAGAGGCAACGCTGCGGTTGGGGGACAG  344

seq1  GGGCTTAATAAGGACACGCACGGCCCCTAGAGGAGAGATGTATCTTCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAATAAGGACACGCACGGCCCCTAGAGGAGAGATGTATCTTCCCT  394

seq1  GCCTACGACACCTCCACTCCTGGCACAAGCCCTCCGTGCCACCAGTCCGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACGACACCTCCACTCCTGGCACAAGCCCTCCGTGCCACCAGTCCGT  444

seq1  TTTCCTGCATGCCCAGTTTAAAGTCTCTTCCTCTCCATCTCCTCTTGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCATGCCCAGTTTAAAGTCTCTTCCTCTCCATCTCCTCTTGAAG  494

seq1  AAATGAGCTGCTCTCTGTGACCTGCCCCAAGAGAGCCTCAAAGAGGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTGCTCTCTGTGACCTGCCCCAAGAGAGCCTCAAAGAGGAGAG  544

seq1  ATGAAGACAGCAGCATCTCTAGGACCGGTGGCTAGTCAGTCAGTCCCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAGCAGCATCTCTAGGACCGGTGGCTAGTCAGTCAGTCCCAGG  594

seq1  ATGGGCGATGATGCCCTTCCCTGTCGCCTTTGCTTCAGAAGCTTACCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGATGATGCCCTTCCCTGTCGCCTTTGCTTCAGAAGCTTACCCTC  644

seq1  CACCTCCAGCCGAGCCAAGGACTGGGCGGGTCCCGCCTGGAAGCAGACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGCCGAGCCAAGGACTGGGCGGGTCCCGCCTGGAAGCAGACTT  694

seq1  CTCCGGTGTCCTCGGTTCTCAGCTCGCTCAGCACCAGAATGTGTTTCTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTGTCCTCGGTTCTCAGCTCGCTCAGCACCAGAATGTGTTTCTTC  744

seq1  CCTGGGGGGTGGGGGTGGGGAGGTATTGAGGCCTCAGCCGCTTCCCGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGGTGGGGGTGGGGAGGTATTGAGGCCTCAGCCGCTTCCCGGGA  794

seq1  GAATTC  804
      ||||||
seq2  GAATTC  800