BAC Information

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BAC

Clone NameB6Ng01-036J08
Chromosome1 (Build37)
Map Location 137,158,996 - 137,260,242
singlet/doubletdoublet
Overlap geneRnpep, Timm17a, Lmod1
Upstream geneMyog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3
Downstream geneTmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J08.bB6Ng01-036J08.g
ACCDH864710DH864711
length940933
definitionDH864710|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J08, 5' end.DH864711|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,259,289 - 137,260,242)(137,158,996 - 137,159,935)
sequence
gaattcagaaaagaaaaataaacatgtagagctagccacagagggaggaa
gcgcatgcgcagaccagtcagggaggggcttgtctaagtgcccttctgaa
ggacatttaactaggggaaggttgacagccttcttcggttgagttctgta
gaggtaggactgggttctggactcaggagagtggattgacatcagcctca
tggcctcaggtttgggccacatgcacctgaaaacctgcagacatcagctc
ttccacagagcatcttagaccttttcagtcatgggtaaaaatttagtttc
ctgatacacacatagtagactgagggaaaccattcttgccagaaaaccac
tgtcctgtttatagtgttgagtgttcatcaccatagatttgtttgcactt
atctttttttttttttaaagacttacttgttggactggaaagatggctca
ggggttaagaaggacccagattcaattcccaaaacccatgggggctggca
gatgactcagcgggtaaaagactgctctttcgaaggtcctgagttcaaat
cctagcaaccacatggtggcccacaaccatccgtaatgagatctgatgcc
ctcttctggtgcatctgaagtcagctacagtgtacttataataataaata
aatctttggaccagagcaagctgggtcgacgggagcgagcaggttcgact
ggagtgagcagaggtcctaaaattcaattctcaaaatcacatgaaggctt
gcaaccatttgtacagctacagtgtactcacatacataaaataaataatc
ttaaaaagaaaattcccagcacccacatggagtctaacaaccacatgtta
ctcagatgccctctttggctcttggatacaggcatccaagtgtactagac
ataatgcagggaaatgctataaacataagaaaccatgtgt
gaattccaggccagaaaggactgcataatgagtttcacaaaaccacaaaa
acccagggctggtgagatggcctccgggtaagaatacttgccactaagct
ggtgacccaggcttgatctctggaacccacctagtggtacaagagaagca
acttccacaagttgtcttctgacctccacgtgtgcatcacaacacacaca
cacacacacacacacacacacacacacacacacacacacaccatttctta
aacataaataacaataaatgagtcattctataactccaacttatctactt
cttgcttaaaaacatttatttaaagtgaaaaagaatgacattttactctc
tgcagcctgggctagggggagcatgggaggcctcctaggactctcaggac
tctctagaccagaagccgccaccagggcagagacccaaacccaaagaaca
gaagctccggggcactggagtgagaacatgaatttgggaaggagcagttc
ttcaggaagcctgtgaagcctttctgaggcagggaccacccaggcgaagc
ctctaactgtccttgggcgccaggatttgctggacatagttgacgacgtt
gctgtggagctgggaaagcatggcggcaaaggtgtccttggccagggtcg
ggccatctcacttgccacccatcatggcgtggacaaaggcagaatgtact
tctgctttccctgtaaaaaacagacacccgtccttcagtagcttaattca
gtgggtctacccagcccctccttcttcaactgcagccatggtctgaggac
aagaagggtgtggggatcagaacaggaatggaagtgctcccgtgaaaaga
ctaattttgcatcttctagggtgtgggaggacgtcctggggaataattta
gtgtgacctccaatccgcagcgagggaccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_137259289_137260242
seq2: B6Ng01-036J08.b_43_982 (reverse)

seq1  ACACAATGGTATCTTATGTGTATAGGCATTTCCCCTGCATTTATGTCTAG  50
      |||| ||||| |||||||| |||| |||||| ||||||| ||||||||| 
seq2  ACAC-ATGGTTTCTTATGTTTATA-GCATTT-CCCTGCA-TTATGTCTA-  45

seq1  GTACCACTTGGATGCCTGGTATCCAAGGAGCCAAAGGAGGGCATCTGAAG  100
      ||| ||||||||||||| |||||||| |||||||| ||||||||||| ||
seq2  GTA-CACTTGGATGCCT-GTATCCAA-GAGCCAAA-GAGGGCATCTG-AG  90

seq1  TAACATGTGGTTGTTAGACTCCATGTGGGTGCTGGGAATTTTTCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TAACATGTGGTTGTTAGACTCCATGTGGGTGCTGGGAATTTT--CTTTTT  138

seq1  AAGATTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAAATGGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGA-TTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAAATGGT  187

seq1  TGCAAGCCTTCATGTGATTTTTGAGAATTGAATTTTAGGACCTCTGCTCA  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTTCATGTGA-TTTTGAGAATTGAATTTTAGGACCTCTGCTCA  236

seq1  CTCCAGTCGAACCTGCTCGCTCCCGTCGACCCAGCTTGCTCTGGTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCGAACCTGCTCGCTCCCGTCGACCCAGCTTGCTCTGGTCCAAA  286

seq1  GATTTATTTATTATTATAAGTACACTGTAGCTGACTTCAGATGCACCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTATTATTATAAGTACACTGTAGCTGACTTCAGATGCACCAGA  336

seq1  AGAGGGCATCAGATCTCATTACGGATGGTTGTGGGCCACCATGTGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCAGATCTCATTACGGATGGTTGTGGGCCACCATGTGGTTGC  386

seq1  TAGGATTTGAACTCAGGACCTTCGAAAGAGCAGTCTTTTACCCGCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTGAACTCAGGACCTTCGAAAGAGCAGTCTTTTACCCGCTGAGT  436

seq1  CATCTGCCAGCCCCCATGGGTTTTGGGAATTGAATCTGGGTCCTTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCAGCCCCCATGGGTTTTGGGAATTGAATCTGGGTCCTTCTTAA  486

seq1  CCCCTGAGCCATCTTTCCAGTCCAACAAGTAAGTCTTTAAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAGCCATCTTTCCAGTCCAACAAGTAAGTCTTTAAAAAAAAAAAA  536

seq1  AGATAAGTGCAAACAAATCTATGGTGATGAACACTCAACACTATAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGCAAACAAATCTATGGTGATGAACACTCAACACTATAAACAG  586

seq1  GACAGTGGTTTTCTGGCAAGAATGGTTTCCCTCAGTCTACTATGTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGTTTTCTGGCAAGAATGGTTTCCCTCAGTCTACTATGTGTGTA  636

seq1  TCAGGAAACTAAATTTTTACCCATGACTGAAAAGGTCTAAGATGCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAACTAAATTTTTACCCATGACTGAAAAGGTCTAAGATGCTCTGT  686

seq1  GGAAGAGCTGATGTCTGCAGGTTTTCAGGTGCATGTGGCCCAAACCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTGATGTCTGCAGGTTTTCAGGTGCATGTGGCCCAAACCTGAG  736

seq1  GCCATGAGGCTGATGTCAATCCACTCTCCTGAGTCCAGAACCCAGTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGGCTGATGTCAATCCACTCTCCTGAGTCCAGAACCCAGTCCTA  786

seq1  CCTCTACAGAACTCAACCGAAGAAGGCTGTCAACCTTCCCCTAGTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAGAACTCAACCGAAGAAGGCTGTCAACCTTCCCCTAGTTAAAT  836

seq1  GTCCTTCAGAAGGGCACTTAGACAAGCCCCTCCCTGACTGGTCTGCGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAGAAGGGCACTTAGACAAGCCCCTCCCTGACTGGTCTGCGCAT  886

seq1  GCGCTTCCTCCCTCTGTGGCTAGCTCTACATGTTTATTTTTCTTTTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCCTCCCTCTGTGGCTAGCTCTACATGTTTATTTTTCTTTTCTGA  936

seq1  ATTC  954
      ||||
seq2  ATTC  940

seq1: chr1_137158996_137159935
seq2: B6Ng01-036J08.g_67_999

seq1  GAATTCCAGGCCAGAAAGGACTGCATAATGAGTTTCACAAAACCACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGAAAGGACTGCATAATGAGTTTCACAAAACCACAAAA  50

seq1  ACCCAGGGCTGGTGAGATGGCCTCCGGGTAAGAATACTTGCCACTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCTGGTGAGATGGCCTCCGGGTAAGAATACTTGCCACTAAGCT  100

seq1  GGTGACCCAGGCTTGATCTCTGGAACCCACCTAGTGGTACAAGAGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCAGGCTTGATCTCTGGAACCCACCTAGTGGTACAAGAGAAGCA  150

seq1  ACTTCCACAAGTTGTCTTCTGACCTCCACGTGTGCATCACAACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACAAGTTGTCTTCTGACCTCCACGTGTGCATCACAACACACACA  200

seq1  CACACACACACACACACACACACACACACACACACACACACCATTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACCATTTCTTA  250

seq1  AACATAAATAACAATAAATGAGTCATTCTATAACTCCAACTTATCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATAACAATAAATGAGTCATTCTATAACTCCAACTTATCTACTT  300

seq1  CTTGCTTAAAAACATTTATTTAAAGTGAAAAAGAATGACATTTTACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTAAAAACATTTATTTAAAGTGAAAAAGAATGACATTTTACTCTC  350

seq1  TGCAGCCTGGGCTAGGGGGAGCATGGGAGGCCTCCTAGGACTCTCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGGGCTAGGGGGAGCATGGGAGGCCTCCTAGGACTCTCAGGAC  400

seq1  TCTCTAGACCAGAAGCCGCCACCAGGGCAGAGACCCAAACCCAAAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGACCAGAAGCCGCCACCAGGGCAGAGACCCAAACCCAAAGAACA  450

seq1  GAAGCTCCGGGGCACTGGAGTGAGAACATGAATTTGGGAAGGAGCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCGGGGCACTGGAGTGAGAACATGAATTTGGGAAGGAGCAGTTC  500

seq1  TTCAGGAAGCCTGTGAAGCCTTTCTGAGGCAGGGACCACCCAGGCGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGCCTGTGAAGCCTTTCTGAGGCAGGGACCACCCAGGCGAAGC  550

seq1  CTCTAACTGTCCTTGGGCGCCAGGATCTGCTGGACATAGTTGACGACGTT  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCTAACTGTCCTTGGGCGCCAGGATTTGCTGGACATAGTTGACGACGTT  600

seq1  GCTGTGGAGCTGGG-AAGCAGTGGCGGCAAAGGTGTCCTTGGCCAGGGTC  649
      |||||||||||||| ||||| |||||||||||||||||||||||||||| 
seq2  GCTGTGGAGCTGGGAAAGCA-TGGCGGCAAAGGTGTCCTTGGCCAGGGT-  648

seq1  CGGGCCATCTCAC-TGCCACCCATCATGGCGTGGTACAGAGGCAGAGTGT  698
      ||||||||||||| |||||||||||||||||||| ||| ||||||| |||
seq2  CGGGCCATCTCACTTGCCACCCATCATGGCGTGG-ACAAAGGCAGAATGT  697

seq1  ACTTCTGCTTTCCCTGTAAGAAACAGACACCCGTCC-TCAGTAGCTT-AC  746
      ||||||||||||||||||| |||||||||||||||| |||||||||| | 
seq2  ACTTCTGCTTTCCCTGTAAAAAACAGACACCCGTCCTTCAGTAGCTTAAT  747

seq1  TCAGTGGGTCTACCCAGCCCCTCCTCCTCCAACTGCAGCCATGGTCTGAG  796
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  TCAGTGGGTCTACCCAGCCCCTCCTTCTTCAACTGCAGCCATGGTCTGAG  797

seq1  GACAAGAAGGGTGTGGGGATCAGAGCAGGGAATGAAGTGCTTCCCGTGAG  846
      |||||||||||||||||||||||| |||| |  ||||||| |||||||| 
seq2  GACAAGAAGGGTGTGGGGATCAGAACAGGAATGGAAGTGC-TCCCGTGA-  845

seq1  AAGGACTGATTTTGGCATCTTCTAGGGTGT-GGAGGACGGTCCTGGGGGA  895
      || |||| ||||| |||||||||||||||| ||||||| ||||| |||||
seq2  AAAGACTAATTTT-GCATCTTCTAGGGTGTGGGAGGAC-GTCCT-GGGGA  892

seq1  ATAAGTTAAGTGTGAACCTCCAATCACGGTAGCGAGGGACCATCT  940
      |||| || |||||| |||||||||  | | |||||||||||||||
seq2  ATAA-TTTAGTGTG-ACCTCCAAT--CCGCAGCGAGGGACCATCT  933