BAC Information

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BAC

Clone NameB6Ng01-036M21
Chromosome1 (Build37)
Map Location 53,860,781 - 53,861,700
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M21.bB6Ng01-036M21.g
ACCDH864864DH864865
length1,083913
definitionDH864864|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M21, 5' end.DH864865|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagcctcattttttcatggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctctttgatttaggataggtaaagaacctttcccagtctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgtaatttta
tgaggactcatttgtccattcttgatcttacagcacaagccattgctgtt
ttattcaggaatttttcccctgtacccatatctttgagacttttccctac
tttctcctctataagttttactgtctctggttttatgtggatctccttga
tccacttagatttgaccttagtacaaggatataggaatggatcaattcac
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactagatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtggggtcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgaagtttttataacaattgc
tctgtagtacagctttaggacaggcatggtgattccaccagaggttcttt
tatccttgagaagaatttttgctatcttaggttttttgttattccagatg
tatttgcagattgtcctttccaattcgttgaagaattgagttagaatttt
tattgggattacattaaatctgtagattgcttttggcaagatagccactt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctggagatctttaatttctttcttcagagactttgaagtcttatcataca
gatctttcacttccttaagttagaatcatgccaaggtattttatattatt
tgtgacttattgagaggtgtttgtttccctattctttcctcagacttgtt
tatcctttgtgtacgaaaggccatcgaccttgtttgattaattttaaatc
cagcctacttcattgagctgttttcaggcttag
gaattccagccaaaatggtaacagtgtagtgggggcagaagatatgcatg
cctcttctaacctgctgcacggttgaggggtaccagttcactttagcaaa
tgtctccatcttgacttcaatgtgtctgtccttagctaaggccctagtta
gcacataacatctctaattgtcccaatgtcttgttgtgctacaaagtaag
gaggtgatgggaaaatcaataggctatgtgagtctgcctgaaggattcaa
gagcccagtagtcagagctggaacagtctgaacaacacaataaaagcaaa
taagatcaagttagagtattataatgtgtagccaatgagttagctcagca
ggtaaaggcagttgccaccaaactaaattataacaagtaattatcaagta
aataaatacctattccatactgacaaatgactgaagaatcaatgaagcaa
tcagttccctatgcagaaatatctcatttaatatatgtacagaatttata
ctggcctcaagtgtgggctttccataatgattttctttcagtgagaacag
taaagaacacactgatcatgtgcttttgatgtgctgtgacaatggccatc
tcctctgacagagactccttatgagaaattcctcatcagtgttctccaaa
accatccaggatgtcaaaatcatgaagaagctgagacatggttttcttag
ataagaggaggctaaaagacatcacaataaataaactatacaatcaggat
agggccttggaaaataataacaaaatctgaatggaacccatggtgctggc
cacataggtggcagagaagccttgctggacaccagtgggaagagagccct
tggccttagtgttcaatgccccatgtagggaatgccctgggcaggaagac
aggatgtgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53860781_53861700
seq2: B6Ng01-036M21.g_68_980 (reverse)

seq1  CCTCCCACTCCCTGTCTTCCTGCCC-TGGCATTCCCCTACACTGGGGCAT  49
      ||||||||  |||||||||||||||  |||||| ||||||| ||||||||
seq2  CCTCCCACATCCTGTCTTCCTGCCCAGGGCATT-CCCTACA-TGGGGCAT  48

seq1  TGAACACCCTAAGGCCCAAGGGCCTCTCCTCCCACTGGTGTCCAGCAAGG  99
      ||||||  |||||| ||||||| ||||| |||||||||||||||||||||
seq2  TGAACA--CTAAGG-CCAAGGG-CTCTCTTCCCACTGGTGTCCAGCAAGG  94

seq1  CCTTCCTCTGCCACCTATGTGGCCAGCACCATGGGTTCCATTCAGATTTT  149
      |  | |||||||||||||||||||||||||||||||||||||||||||||
seq2  C--TTCTCTGCCACCTATGTGGCCAGCACCATGGGTTCCATTCAGATTTT  142

seq1  GTTA-TATTTTCCAAGGCCCTATCCTGATTGTTATAGTTTATTTATTTGT  198
      |||| |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  GTTATTATTTTCCAAGGCCCTATCCTGATTG-TATAGTTTATTTA-TTGT  190

seq1  GATGTCTTTTAGCCTCCTCTTATCTAAG-AAACCATGTCTCAGCTTCTTC  247
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATGTCTTTTAGCCTCCTCTTATCTAAGAAAACCATGTCTCAGCTTCTTC  240

seq1  ATGATTTTGACATCCTGGATGGTTTTGGAGAACACTGATGAGGAATTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGACATCCTGGATGGTTTTGGAGAACACTGATGAGGAATTTCT  290

seq1  CATAAGGAGTCTCTGTCAGAGGAGATGGCCATTGTCACAGCACATCAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGTCTCTGTCAGAGGAGATGGCCATTGTCACAGCACATCAAAA  340

seq1  GCACATGATCAGTGTGTTCTTTACTGTTCTCACTGAAAGAAAATCATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGATCAGTGTGTTCTTTACTGTTCTCACTGAAAGAAAATCATTAT  390

seq1  GGAAAGCCCACACTTGAGGCCAGTATAAATTCTGTACATATATTAAATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCACACTTGAGGCCAGTATAAATTCTGTACATATATTAAATGA  440

seq1  GATATTTCTGCATAGGGAACTGATTGCTTCATTGATTCTTCAGTCATTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCTGCATAGGGAACTGATTGCTTCATTGATTCTTCAGTCATTTG  490

seq1  TCAGTATGGAATAGGTATTTATTTACTTGATAATTACTTGTTATAATTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGGAATAGGTATTTATTTACTTGATAATTACTTGTTATAATTTA  540

seq1  GTTTGGTGGCAACTGCCTTTACCTGCTGAGCTAACTCATTGGCTACACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGGCAACTGCCTTTACCTGCTGAGCTAACTCATTGGCTACACAT  590

seq1  TATAATACTCTAACTTGATCTTATTTGCTTTTATTGTGTTGTTCAGACTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTCTAACTTGATCTTATTTGCTTTTATTGTGTTGTTCAGACTG  640

seq1  TTCCAGCTCTGACTACTGGGCTCTTGAATCCTTCAGGCAGACTCACATAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTCTGACTACTGGGCTCTTGAATCCTTCAGGCAGACTCACATAG  690

seq1  CCTATTGATTTTCCCATCACCTCCTTACTTTGTAGCACAACAAGACATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGATTTTCCCATCACCTCCTTACTTTGTAGCACAACAAGACATTG  740

seq1  GGACAATTAGAGATGTTATGTGCTAACTAGGGCCTTAGCTAAGGACAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTAGAGATGTTATGTGCTAACTAGGGCCTTAGCTAAGGACAGAC  790

seq1  ACATTGAAGTCAAGATGGAGACATTTGCTAAAGTGAACTGGTACCCCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAGTCAAGATGGAGACATTTGCTAAAGTGAACTGGTACCCCTCA  840

seq1  ACCGTGCAGCAGGTTAGAAGAGGCATGCATATCTTCTGCCCCCACTACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCAGCAGGTTAGAAGAGGCATGCATATCTTCTGCCCCCACTACAC  890

seq1  TGTTACCATTTTGGCTGGAATTC  920
      |||||||||||||||||||||||
seq2  TGTTACCATTTTGGCTGGAATTC  913