BAC Information

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BAC

Clone NameB6Ng01-036N13
Chromosome1 (Build37)
Map Location 11,838,031 - 11,950,030
singlet/doubletdoublet
Overlap geneA830018L16Rik
Upstream geneC030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N13.bB6Ng01-036N13.g
ACCDH864894DH864895
length9211,142
definitionDH864894|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N13, 5' end.DH864895|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,838,031 - 11,838,696)(11,948,847 - 11,950,030)
sequence
gaattcaaccaaaatacttatctaatcattgtgttttatgttgtgaagaa
tagaaaatcatattgggaagaatttccattatcacactttgttgtgtaga
tatagaaataagatatcccttaattagaaatctgttagcttaaacttcaa
tgtaggccagtaacagcaatttattattattattattattattattatta
ttacttacttacttacttacttacttactttacatcccacttactgcccc
ttccgtgtcacccctttccacagtctttctcccatctccttttcccttct
cttctgagagggtggggtacccctagatatccccttcactggaacatcaa
gtttttgtgaggttaggttcttactcttccactgaggccagacaatgcag
ccaaacaagaacatattgcacatacaggttacagcttttagcattgcccc
tgctctagttgctcagaacccacatgaagaccaagatgcaaatttgctac
atatgtgcagggagggctcggtccagccatgaatgttccttggctggtgg
ttcagactctgagagccccaagggcccagattagttgattctgttggcct
ttctgtggagttcctacccccttaggggtctacaattcttccttctattc
tttcataagaattcccaagcttcatccactgttttgcatctgtctgagtc
acctgctgggtggagcttctcagacttcttttctgcagtataacagaata
tcattaatagtgtcagggatgactgtttgtccatgtctcaagtgggccag
ttattagttggccattccctcagtctctgttccatttctcatcccttcac
ttcttttttgtgtgttaaaaaaattttttattaggtattttcctcattta
cattttcatgctatccaaaag
gaattctgaagcagttcagctgctgtgaatacactcaaatcttttcaata
gcagaaagtgcaaggctaacatccacagtctcaggaataagctttgctac
caagcagcctatgcattccacacgttcatgataatgtattatgtttaata
taaaagactgtcccagaatacgttcctgaggctaaagagagaagtaagtt
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttcttattgtcacaatttggtagattca
gtccacacctagtgaaaagataagactattccaacacaaacaaagcattt
gctaagggattgaaaacatgtgctattcacatctaactctttttttaaaa
tattttttattattatgtattttcctcaattacatttagaatgctatccc
aaaagtcccccataccctcccccctacttccctacccacccattcccatt
ttttggccctggcattcccctgtaatgggtcatataaagtttgcgtgtcc
aatgggcctctctttccagtgacatctaactttgatttcttaaaaaacaa
gaacaaaatattggaccatgtagctcctattagtttagggaattcaactc
catgaaagactctagcccaaagatttttcaaaatagcatttgagttttct
cactttaaatacaacctttttcagatgagtctaacaatgacctagatgag
ctctctgtgacctagagttttaaataagagaatccatgtattcaaaactt
attaatttatatattgctgaacaataggacacagtgttctgctatttctt
aaaactagatatttagtgaaattagttttatgtacttgtggtttgaatat
gctgggccagagagtggactataggagttgtgcctttgtttgaagaaggt
gtcactgtggggtggctttgagactctctagcttctgtgaagttagtctt
ctctggtttgccttcgacagtggtaatctcacttcttcagaccttgcctg
cctgaacctgcctgttctgctaagatagaagtgacctataattctcggga
gaacatcactaagatattgtaacaagggtgtcagtctgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_11838031_11838696
seq2: B6Ng01-036N13.b_46_711

seq1  GAATTCAACCAAAATACTTATCTAATCATTGTGTTTTATGTTGTGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAAAATACTTATCTAATCATTGTGTTTTATGTTGTGAAGAA  50

seq1  TAGAAAATCATATTGGGAAGAATTTCCATTATCACACTTTGTTGTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATCATATTGGGAAGAATTTCCATTATCACACTTTGTTGTGTAGA  100

seq1  TATAGAAATAAGATATCCCTTAATTAGAAATCTGTTAGCTTAAACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATAAGATATCCCTTAATTAGAAATCTGTTAGCTTAAACTTCAA  150

seq1  TGTAGGCCAGTAACAGCAATTTATTATTATTATTATTATTATTATTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCAGTAACAGCAATTTATTATTATTATTATTATTATTATTATTA  200

seq1  TTACTTACTTACTTACTTACTTACTTACTTTACATCCCACTTACTGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACTTACTTACTTACTTACTTACTTTACATCCCACTTACTGCCCC  250

seq1  TTCCGTGTCACCCCTTTCCACAGTCTTTCTCCCATCTCCTTTTCCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTCACCCCTTTCCACAGTCTTTCTCCCATCTCCTTTTCCCTTCT  300

seq1  CTTCTGAGAGGGTGGGGTACCCCTAGATATCCCCTTCACTGGAACATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGGGTGGGGTACCCCTAGATATCCCCTTCACTGGAACATCAA  350

seq1  GTTTTTGTGAGGTTAGGTTCTTACTCTTCCACTGAGGCCAGACAATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTGAGGTTAGGTTCTTACTCTTCCACTGAGGCCAGACAATGCAG  400

seq1  CCAAACAAGAACATATTGCACATACAGGTTACAGCTTTTAGCATTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGAACATATTGCACATACAGGTTACAGCTTTTAGCATTGCCCC  450

seq1  TGCTCTAGTTGCTCAGAACCCACATGAAGACCAAGATGCAAATTTGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGTTGCTCAGAACCCACATGAAGACCAAGATGCAAATTTGCTAC  500

seq1  ATATGTGCAGGGAGGGCTCGGTCCAGCCATGAATGTTCCTTGGCTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCAGGGAGGGCTCGGTCCAGCCATGAATGTTCCTTGGCTGGTGG  550

seq1  TTCAGACTCTGAGAGCCCCAAGGGCCCAGATTAGTTGATTCTGTTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTCTGAGAGCCCCAAGGGCCCAGATTAGTTGATTCTGTTGGCCT  600

seq1  TTCTGTGGAGTTCCTACCCCCTTAGGGGTCTACAATTCTTCCTTCTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGAGTTCCTACCCCCTTAGGGGTCTACAATTCTTCCTTCTATTC  650

seq1  TTTCATAAGAATTCCC  666
      ||||||||||||||||
seq2  TTTCATAAGAATTCCC  666

seq1: chr1_11948847_11950030
seq2: B6Ng01-036N13.g_68_1209 (reverse)

seq1  CACCACAGACTGTACACCCTTGTGTTTAACAAATATTCTAGATGTATTTG  50
      |||| ||||||| |||||||||   |||  | || ||   ||||      
seq2  CACC-CAGACTG-ACACCCTTG---TTACAATATCTTAGTGATG------  39

seq1  TTTTCTCACAGAAGAAATTTAATTGAGGTTCAATCTATTATCATTAAGGC  100
        ||||| |   |||| | ||      | |||  ||  |||| |||  ||
seq2  --TTCTCCC--GAGAATTATA------GGTCA--CTTCTATC-TTA--GC  74

seq1  AGAAAACAGGGCAGTGTCCAGGCAGGCATGGTACTGGAGGAGCTGAGAGT  150
      |||| |   ||||| || |||||||||| ||| ||| || || ||||| |
seq2  AGAACA---GGCAG-GTTCAGGCAGGCAAGGT-CTGAAGAAG-TGAGATT  118

seq1  TCTACATCTTGTTCAGAAGGCAAACAGGAGAAGACTAACTTCCAGGAAGC  200
       | ||    |||   ||||||||||  |||||||||||||||   |||||
seq2  ACCAC----TGT--CGAAGGCAAACCAGAGAAGACTAACTTCACAGAAGC  162

seq1  TAGGAGGAAGGTCTCAAAGCCCACCCCCACAGTGACACACTTTCTCCAAC  250
      ||    ||  |||||||||||   |||||||||||||| |||  || |||
seq2  TA----GAGAGTCTCAAAGCC--ACCCCACAGTGACAC-CTTCTTCAAAC  205

seq1  AAGGCCACACCTCCTAATAGTGCCACTCTCTGGGCCAAGCATATTCAAAC  300
      || | |||| ||||| ||||| ||||||||| |||| |||||||||||||
seq2  AAAGGCACAACTCCT-ATAGT-CCACTCTCT-GGCCCAGCATATTCAAAC  252

seq1  CACAAGTACATAAAACTTAATTTCACTAAATATACTAGTCTTAAG-AATA  349
      |||||||||||||||| |||||||||||||||| ||||| ||||| ||||
seq2  CACAAGTACATAAAAC-TAATTTCACTAAATAT-CTAGTTTTAAGAAATA  300

seq1  GCAGAACACTGTGTCCTATTGCTCAGCAATATATAAATTTATAAGTTTTG  399
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GCAGAACACTGTGTCCTATTGTTCAGCAATATATAAATTAATAAGTTTTG  350

seq1  AATACATGGA-TCTCTTATTTAAAACTCTAGGTCACAGAGAGCTCATCTA  448
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATACATGGATTCTCTTATTTAAAACTCTAGGTCACAGAGAGCTCATCTA  400

seq1  GGTCATTGTTAGACTCATCTG-AAAAGGTTGTATTT-AAGTGAGAAAACT  496
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GGTCATTGTTAGACTCATCTGAAAAAGGTTGTATTTAAAGTGAGAAAACT  450

seq1  CAAATGCTATTTTGAAAATTCTTTGGGCTAGAGTCTTTCATGGAGTTGAA  546
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAATGCTATTTTGAAAAATCTTTGGGCTAGAGTCTTTCATGGAGTTGAA  500

seq1  TTCCCTAAACTAATAGGAGCTACATGGTCCAATATTTTGTTCTTGTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAACTAATAGGAGCTACATGGTCCAATATTTTGTTCTTGTTTTT  550

seq1  TAAGAAATCAAAGTTAGATGTCACTGGAAAGAGAGGCCCATTGGACACGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATCAAAGTTAGATGTCACTGGAAAGAGAGGCCCATTGGACACGC  600

seq1  AAACTTTATATGACCCATTACAGGGGAATGCCAGGGCCAAAAAATGGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATATGACCCATTACAGGGGAATGCCAGGGCCAAAAAATGGGAA  650

seq1  TGGGTGGGTAGGGAAGTAGGGGGGAGGGTATGGGGGACTTTTGGGATAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTAGGGAAGTAGGGGGGAGGGTATGGGGGACTTTTGGGATAGC  700

seq1  ATTCTAAATGTAATTGAGGAAAATACATAATAATAAAAAATATTTTAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGTAATTGAGGAAAATACATAATAATAAAAAATATTTTAAAA  750

seq1  AAAGAGTTAGATGTGAATAGCACATGTTTTCAATCCCTTAGCAAATGCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTAGATGTGAATAGCACATGTTTTCAATCCCTTAGCAAATGCTT  800

seq1  TGTTTGTGTTGGAATAGTCTTATCTTTTCACTAGGTGTGGACTGAATCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTTGGAATAGTCTTATCTTTTCACTAGGTGTGGACTGAATCTA  850

seq1  CCAAATTGTGACAAT----AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  942
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  CCAAATTGTGACAATAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  900

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACTTACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACTTACT  950

seq1  TCTCTCTTTAGCCTCAGGAACGTATTCTGGGACAGTCTTTTATATTAAAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTAGCCTCAGGAACGTATTCTGGGACAGTCTTTTATATTAAAC  1000

seq1  ATAATACATTATCATGAACGTGTGGAATGCATAGGCTGCTTGGTAGCAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACATTATCATGAACGTGTGGAATGCATAGGCTGCTTGGTAGCAAA  1050

seq1  GCTTATTCCTGAGACTGTGGATGTTAGCCTTGCACTTTCTGCTATTGAAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCCTGAGACTGTGGATGTTAGCCTTGCACTTTCTGCTATTGAAA  1100

seq1  AGATTTGAGTGTATTCACAGCAGCTGAACTGCTTCAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAGTGTATTCACAGCAGCTGAACTGCTTCAGAATTC  1142