BAC Information

Click to search

BAC

Clone NameB6Ng01-036P05
Chromosome1 (Build37)
Map Location 91,339,778 - 91,459,389
singlet/doubletdoublet
Overlap geneCentg2
Upstream geneGlrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P05.bB6Ng01-036P05.g
ACCDH864970DH864971
length789725
definitionDH864970|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P05, 5' end.DH864971|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,458,600 - 91,459,389)(91,339,778 - 91,340,500)
sequence
aaggtcagcctgggctatatagagaaccactgtgaattcaaggtcagctt
gggctatacaacaaataccaggccaaccagggctttctcaaaaaagaaaa
cccaagtatctctctgatgacccagtgcagctacacagtttcatttactg
aaatctgtcccttgcaagtcctgtaacccaagctggacagtaaaaggcca
ctctttttaagtacgaggcattcctccattgaaaaagaggaggcatccct
gcctgtgtgcaggggctgatagagtccacctatacttatcatgatatcat
gttctaggtactttgattagggaatgccagcaagcctgaaaagaccatgt
gcagactagactctgtagggaagtctgagggttagagtgtcccctgtgaa
gcctggtgaagggaagaggtaggcactgtcagttccaaggccctgaacaa
cagtgggacaaagaataacctgagaatctccccggcgggtcagaacaatt
aggaaacagtcagatgggccaacctgagccaggtgtgcaggagacaggac
agacaccttcgctttcagtgtgccctctcccatagtcagtcacagacatc
tccctgcaggtcacagtgagtggcttttgggaggtttatgaggatggcag
tggtggtggacaagacacaaaactggaatcaggtatgcttgacctcaccc
acacctggtccctttactcctttgctcactgtctgcaggaagggcaaaga
acagactgaacccaaactcagcctggggtgggggggaag
gaattcaggagctgagaactagcgtgcattttgcacttgacatacaaaga
aacgaatttccacaaccccattagtgtgtgtgtgtgtgtggggctataac
catccaccatacacactgccgaaaccccacggtgggtgtgagtgtgtgaa
ttcgttgtggggactcagcatctccaaaagctgactgcaacgggaccagt
gtctttgtggcacatgcagaagacagatagaagaggtggcctgaggaata
aggtgtgtctttgcctagcgctcttacttggaaatagagaaagaaaaaac
aaaacgggcagtagctgagtcaggaaaacttcgtgggaccacagatctat
caaaagaagagcactgactcccggcactgtcatctctttgtggtcctttc
ctcttcttaatcgcagcaccacctctgctctctgccacccagaaccacag
gcagttaatttccatctgtgctggctcagtgctgggtagcttcccaggct
caggcctgctcctggtccacgtcccaggatctgtaggagagtgacagggt
catcactgggcctgtgtggcctctgtgttctcgccgctgctttaaaggat
gctgagaggctgagcatggtgttgtaccttaactcatcgctccggaaggg
agagttctgtgatttttgaggcctgacggttcttaagcatcaacaaacca
acaaacctccaaacgtggtgctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91458600_91459389
seq2: B6Ng01-036P05.b_52_840 (reverse)

seq1  CTTCCCCCCCACCCCAGGCTGAGTTTGGCGTTCAGTCTGTTCTTTGCCCT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCCCCCCACCCCAGGCTGAGTTTGG-GTTCAGTCTGTTCTTTGCCCT  49

seq1  TCCTGCAGACAGTGAGCAAAGGAGTAAGGGGACCAGGTGTGGGTGAGGTC  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTGCAGACAGTGAGCAAAGGAGTAAAGGGACCAGGTGTGGGTGAGGTC  99

seq1  -AGCATACCTGATTCCAGTTTTGTGTCTTGTCCACCACCACTGCCATCCT  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACCTGATTCCAGTTTTGTGTCTTGTCCACCACCACTGCCATCCT  149

seq1  CATTAAACCTCCCGAAAGCCACTCACTGTGACCTGCAGGGAGATGTCTGT  199
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CA-TAAACCTCCCAAAAGCCACTCACTGTGACCTGCAGGGAGATGTCTGT  198

seq1  GACTGACTATGGGAGAGGGCACACTGAAAGCGAAGGTGTCTGTCCTGTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTATGGGAGAGGGCACACTGAAAGCGAAGGTGTCTGTCCTGTCT  248

seq1  CCTGCACACCTGGCTCAGGTTGGCCCATCTGACTGTTTCCTAATTGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACACCTGGCTCAGGTTGGCCCATCTGACTGTTTCCTAATTGTTCT  298

seq1  GACCCGCCGGGGAGATTCTCAGGTTATTCTTTGTCCCACTGTTGTTCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGCCGGGGAGATTCTCAGGTTATTCTTTGTCCCACTGTTGTTCAGG  348

seq1  GCCTTGGAACTGACAGTGCCTACCTCTTCCCTTCACCAGGCTTCACAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAACTGACAGTGCCTACCTCTTCCCTTCACCAGGCTTCACAGGG  398

seq1  GACACTCTAACCCTCAGACTTCCCTACAGAGTCTAGTCTGCACATGGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTAACCCTCAGACTTCCCTACAGAGTCTAGTCTGCACATGGTCT  448

seq1  TTTCAGGCTTGCTGGCATTCCCTAATCAAAGTACCTAGAACATGATATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCTTGCTGGCATTCCCTAATCAAAGTACCTAGAACATGATATCA  498

seq1  TGATAAGTATAGGTGGACTCTATCAGCCCCTGCACACAGGCAGGGATGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTATAGGTGGACTCTATCAGCCCCTGCACACAGGCAGGGATGCC  548

seq1  TCCTCTTTTTCAATGGAGGAATGCCTCGTACTTAAAAAGAGTGGCCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTTCAATGGAGGAATGCCTCGTACTTAAAAAGAGTGGCCTTTT  598

seq1  ACTGTCCAGCTTGGGTTACAGGACTTGCAAGGGACAGATTTCAGTAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGCTTGGGTTACAGGACTTGCAAGGGACAGATTTCAGTAAATG  648

seq1  AAACTGTGTAGCTGCACTGGGTCATCAGAGAGATACTTGGGTTTTCTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTAGCTGCACTGGGTCATCAGAGAGATACTTGGGTTTTCTTTT  698

seq1  TTGAGAAAGCCCTGGTTGGCCTGGTATTTGTTGTATAGCCCAAGCTGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGCCCTGGTTGGCCTGGTATTTGTTGTATAGCCCAAGCTGACC  748

seq1  TTGAATTCACAGTGGTTCTCTATATAGCCCAGGCTGACCTT  790
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCACAGTGGTTCTCTATATAGCCCAGGCTGACCTT  789

seq1: chr1_91339778_91340500
seq2: B6Ng01-036P05.g_68_792

seq1  GAATTCAGGAGCTGAGAACTAGCGTGCATTTTGCACTTGACATACAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGCTGAGAACTAGCGTGCATTTTGCACTTGACATACAAAGA  50

seq1  AACGAATTTCCACAACCCCATTAGTGTGTGTGTGTGTGTGGGGCTATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATTTCCACAACCCCATTAGTGTGTGTGTGTGTGTGGGGCTATAAC  100

seq1  CATCCACCATACACACTGCCGAAACCCCACGGTGGGTGTGAGTGTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCATACACACTGCCGAAACCCCACGGTGGGTGTGAGTGTGTGAA  150

seq1  TTCGTTGTGGGGACTCAGCATCTCCAAAAGCTGACTGCAACGGGACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGTGGGGACTCAGCATCTCCAAAAGCTGACTGCAACGGGACCAGT  200

seq1  GTCTTTGTGGCACATGCAGAAGACAGATAGAAGAGGTGGCCTGAGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGGCACATGCAGAAGACAGATAGAAGAGGTGGCCTGAGGAATA  250

seq1  AGGTGTGTCTTTGCCTAGCGCTCTTACTTGGAAATAGAGAAAGAAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTCTTTGCCTAGCGCTCTTACTTGGAAATAGAGAAAGAAAAAAC  300

seq1  AAAACGGGCAGTAGCTGAGTCAGGAAAACTTCGTGGGACCACAGATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGGCAGTAGCTGAGTCAGGAAAACTTCGTGGGACCACAGATCTAT  350

seq1  CAAAAGAAGAGCACTGACTCCCGGCACTGTCATCTCTTTGTGGTCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGAGCACTGACTCCCGGCACTGTCATCTCTTTGTGGTCCTTTC  400

seq1  CTCTTCTTAATCGCAGCACCACCTCTGCTCTCTGCCACCCAGAACCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTAATCGCAGCACCACCTCTGCTCTCTGCCACCCAGAACCACAG  450

seq1  GCAGTTAATTTCCATCTGTGCTGGCTCAGTGCTGGGTAGCTTCCCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAATTTCCATCTGTGCTGGCTCAGTGCTGGGTAGCTTCCCAGGCT  500

seq1  CAGGCCTGCTCCTGGTCCACGTCCCAGGATCTGTAGGAGAGTGACAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCTCCTGGTCCACGTCCCAGGATCTGTAGGAGAGTGACAGGGT  550

seq1  CATCACTGGGCCTGTGTGGCCTCTGTGTTCTCGCCGCTGCTTTAAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGGCCTGTGTGGCCTCTGTGTTCTCGCCGCTGCTTTAAAGGAT  600

seq1  GCTGAGAGGCTGAGCATGGTGTTGTACCTTTAACTCAGCGCTCCGG-AGG  649
      |||||||||||||||||||||||||||| |||||||| |||||||| |||
seq2  GCTGAGAGGCTGAGCATGGTGTTGTACC-TTAACTCATCGCTCCGGAAGG  649

seq1  GAGAGTTCTGTGATTTTTGAGGCCAGACGGTTC-TAAACAGCAACAAACC  698
      |||||||||||||||||||||||| |||||||| ||| || |||||||||
seq2  GAGAGTTCTGTGATTTTTGAGGCCTGACGGTTCTTAAGCATCAACAAACC  699

seq1  AACAAACCAGCAAACGT-GTGCTAAG  723
      ||||||||  ||||||| ||||||||
seq2  AACAAACCTCCAAACGTGGTGCTAAG  725