BAC Information

Click to search

BAC

Clone NameB6Ng01-036P23
Chromosome4 (Build37)1 (Build37)
Map Location 103,467,316 - 103,468,430152,622,782 - 152,622,891
singlet/doubletsingletsinglet
Overlap geneEG665460
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
Downstream geneLOC622315, Dab1, C8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P23.bB6Ng01-036P23.g
ACCDH865004DH865005
length1,094346
definitionDH865004|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P23, 5' end.DH865005|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,467,316 - 103,468,430)(152,622,782 - 152,622,891)
sequence
gaattctcttagggcatatggtatatttttaactccatgattccttggac
caaggtccttaatccaaaggaaatgcatttagcctgaaggttctgaacca
attacatagttttataaggtcaaaataaaagttgggagtcattttatctt
cacccatactgggggaagttacagaaccaagccgctttaatgagaaaaag
cactgggttgggaaatgtgcaaatacaagtgtcagcaccatcagagactc
cgtggcatcctggatgccggcagatgaggccagggctgggctgtgaagtc
ctttgacaacacggtctgtatccctgaacaagttgccaagacttcaagag
ggatagacatgaaacacaacatccttccacccttattaagatttaatcct
gctttcaacaggattgcgatgttattaaattagattttttttccctccct
gaaaaggggatttaacttttgcttttctgacatcataatcaacacggaac
agatgcaaaggggaaatcgtgtgaccattggtaatgtggacctatactta
acatgtagcatgtgaagttattaaaatggaaattaattccctttattact
atcgtgccctatcaattaatttggttggaggtacttatgaatatgcaatc
acaccttgctgctgcccaccccatgctttaaggatgtggaaggcagtggc
aaagcagctctgctagtacagctcatgtctgctccctaacaattgacgat
gggggtaactgacagctaatgaatttttgcatgccgggtactggtataaa
cactttgcactctttttcaataatcctcacaatcgctccttaagatgtgt
aattttattttccctatgtacagaggaggaaggggcacagagaagtagaa
aaatcatcctcccgtcacccagaccttctgccacccagtccgacccttcg
ttactgtgctttgttgcactgctgctgcagtggaggatgtacgagaagcc
agcatggggtgctctttagagagattttgggcatggagatgaactgagac
tgacagggagaatttgttaaatatttgttattttttacttagaa
agatggagctatattttgttgggggtgagaggagaaactaagagttcagt
tttgaacatattgactttgacatatatactagatatctgagtggatatgt
taagcaggtttttaagatatagaaatgtctaattcagcacagaaatctag
gcagaagataccaatttgagtattgtcaacacttagatagtatttaaaga
cagtagacgggatcagcctcccaaaggagtgagcatacacaaaatcgcag
aacccaagaacactctagagtttagcttcagaaaatgagaaataacctgc
ttttaaaaaaaggaaagaaaggaaggaagggaggaaggaagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_103467316_103468430
seq2: B6Ng01-036P23.b_45_1138

seq1  GAATTCTCTTAGGGCATATGGTATATTTTTAACTCCATGATTCCTTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGGGCATATGGTATATTTTTAACTCCATGATTCCTTGGAC  50

seq1  CAAGGTCCTTAATCCAAAGGAAATGCATTTAGCCTGAAGGTTCTGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCTTAATCCAAAGGAAATGCATTTAGCCTGAAGGTTCTGAACCA  100

seq1  ATTACATAGTTTTATAAGGTCAAAATAAAAGTTGGGAGTCATTTTATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAGTTTTATAAGGTCAAAATAAAAGTTGGGAGTCATTTTATCTT  150

seq1  CACCCATACTGGGGGAAGTTACAGAACCAAGCCGCTTTAATGAGAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATACTGGGGGAAGTTACAGAACCAAGCCGCTTTAATGAGAAAAAG  200

seq1  CACTGGGTTGGGAAATGTGCAAATACAAGTGTCAGCACCATCAGAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTTGGGAAATGTGCAAATACAAGTGTCAGCACCATCAGAGACTC  250

seq1  CGTGGCATCCTGGATGCCGGCAGATGAGGCCAGGGCTGGGCTGTGAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCATCCTGGATGCCGGCAGATGAGGCCAGGGCTGGGCTGTGAAGTC  300

seq1  CTTTGACAACACGGTCTGTATCCCTGAACAAGTTGCCAAGACTTCAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAACACGGTCTGTATCCCTGAACAAGTTGCCAAGACTTCAAGAG  350

seq1  GGATAGACATGAAACACAACATCCTTCCACCCTTATTAAGATTTAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGACATGAAACACAACATCCTTCCACCCTTATTAAGATTTAATCCT  400

seq1  GCTTTCAACAGGATTGCGATGTTATTAAATTAGATTTTTTTTCCCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAACAGGATTGCGATGTTATTAAATTAGATTTTTTTTCCCTCCCT  450

seq1  GAAAAGGGGATTTAACTTTTGCTTTTCTGACATCATAATCAACACGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGATTTAACTTTTGCTTTTCTGACATCATAATCAACACGGAAC  500

seq1  AGATGCAAAGGGGAAATCGTGTGACCATTGGTAATGTGGACCTATACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAAGGGGAAATCGTGTGACCATTGGTAATGTGGACCTATACTTA  550

seq1  ACATGTAGCATGTGAAGTTATTAAAATGGAAATTAATTCCCTTTATTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGCATGTGAAGTTATTAAAATGGAAATTAATTCCCTTTATTACT  600

seq1  ATCGTGCCCTATCAATTAATTTGGTTGGAGGTACTTATGAATATGCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCCCTATCAATTAATTTGGTTGGAGGTACTTATGAATATGCAATC  650

seq1  ACACCTTGCTGCTGCCCACCCCATGCTTTAAGGATGTGGAAGGCAGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGCTGCTGCCCACCCCATGCTTTAAGGATGTGGAAGGCAGTGGC  700

seq1  AAAGCAGCTCTGCTAGTACAGCTCATGTCTGCTCCCTAACAATTGACGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTCTGCTAGTACAGCTCATGTCTGCTCCCTAACAATTGACGAT  750

seq1  GGGGGTAACTGACAGCTAATGAATTTTTGCATGCCGGGTACTGGTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAACTGACAGCTAATGAATTTTTGCATGCCGGGTACTGGTATAAA  800

seq1  CACTTTGCACTCTTTTTCAATAATCCTCACAATCGCTCCTTAAGATGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCACTCTTTTTCAATAATCCTCACAATCGCTCCTTAAGATGTGT  850

seq1  AATTTTATTTTCCCTATGTACAGAGGAGGAAGGGGGCACAGAGAAGTAGA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTTTATTTTCCCTATGTACAGAGGAGGAA-GGGGCACAGAGAAGTAGA  899

seq1  AAAATCATCCTCCCGTCACCCAGACCTTCTGCCACCCAAGTCCGGACCCT  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  AAAATCATCCTCCCGTCACCCAGACCTTCTGCCACCC-AGTCC-GACCCT  947

seq1  TCGTTACTGTGCTTTGTTGCACCTTGCTGGCTGCAGTGGAAGGGATGTAC  1000
      ||||||||||||||||||||||  |||| |||||||||||  ||||||||
seq2  TCGTTACTGTGCTTTGTTGCAC--TGCT-GCTGCAGTGGA--GGATGTAC  992

seq1  GAGGAAGGCCAGCATGGGGTGGCTTCTGTAAGAGAGATATGGGGCATTGG  1050
      |||  | ||||||||||||||   ||| | |||||||| | ||||| |||
seq2  GAG--AAGCCAGCATGGGGTG--CTCT-TTAGAGAGATTTTGGGCA-TGG  1036

seq1  AGATGGAACTGAAGACTGAGCAGGGGAGAAATTTTGTAAAATATATGGTT  1100
      |||| |||||| ||||||| || |||||||  ||||| |||||| | |||
seq2  AGAT-GAACTG-AGACTGA-CA-GGGAGAA--TTTGTTAAATAT-TTGTT  1079

seq1  TATTTTTACTTAGAA  1115
        |||||||||||||
seq2  ATTTTTTACTTAGAA  1094

seq1: chr1_152622782_152622891
seq2: B6Ng01-036P23.g_379_420 (reverse)

seq1  CCTTCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCATCCTTCCTTCCTTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTCCTTCTTTCCTTCCTCCCTCCCTTCCTTCCTTCCTTTTTTTCTT  100
                        ||||||| ||||||| ||||||||  ||||||
seq2  ------------------CCTCCCTTCCTTCCTCCCTTCCTTCCTTTCTT  32

seq1  TCCTTTTTTT  110
      ||||||||||
seq2  TCCTTTTTTT  42