BAC Information

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BAC

Clone NameB6Ng01-037F17
Chromosome1 (Build37)
Map Location 77,524,426 - 77,672,248
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037F17.bB6Ng01-037F17.g
ACCDH865247DH865248
length852735
definitionDH865247|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F17, 5' end.DH865248|Mus musculus domesticus DNA, BAC clone: B6Ng01-037F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,671,411 - 77,672,248)(77,524,426 - 77,525,160)
sequence
gaattctatcctcttccatttaatttaatatggtaataataatgtagtat
gagtgttatcaggacaacattaggagaaattttagatcctgtctgagcat
agcatttataataaaggatagacactcttgctactctgatgtaatgggga
gaggcacttgagaggcttcattaattcttacaaggtactgatgtcctgtt
tggtaaattgaggtctggaaataccagtaaactggtgtatctctgaatga
gataagaccatcaaatggttcacgctggaagcaaaaccactccattgtga
gttatttataacacctaattataaattaaggcctcatccttaataaacag
taaagtttcattcatttgttctctctgtctctctgatctctctgtctctc
tgtctgtctgtctatctcgcgctctctctctctctctttcctcttttctt
cctttcatttcctctgaccaacaatcatctttttaagtgacaattctaca
aagcctgtactaccaagaagtgttctattggaattgaaggcatcaccttt
tgaacctaagaccaccactaatgtaagtgcctgaacaaatgaaggaatgt
gggtgaaatatgctttcaagatctcactttacagcatctctgcctctctc
catccaggtctgtgtttctagttttcctgtcctatctgttcctacgttcc
ctggctctgtatctgcattttgtaagccccctcagtaagacttggcgtct
cttttctgcttatgtatactagaaaaatgaatggcaaactcttactttac
actctgcaaccatagaaaccagtcctaatgctaagccatctaattgctgt
gt
gaattcataactctcacagttagagagggagggtcttcataaataaaaca
gcccacttacttttgcatcttccaaatagcaaggcaactcacccaccaac
agatggacgcatatttaatcagtcaactcattgctgtcttttggtgagaa
aatatatctgcaggttacaacactgggttaaaaaaataaaactaaaatct
cagaatcatgggtttcatgaaaagaattataaattttaatactttgataa
cctattcaaatcttgtatagtgataaattaaactaaattattggtggaaa
aacaaatcatgcaaaaataatttggggttattgtaaatctgagacatgaa
tagaattgccatcagtctcaggctcctttcatggttatctattctaactg
agttaagtaagctgatgtgatccaattcaactcaaggctgtttgtgcaat
gctgttcagagatattctacaatattatgcttctgttcttaatttgcatt
atactgacaaataacttcagaaaaagatgctctttgttttggagaaatta
ctctaaaaatgagaagataatatttatcaaaggaagccagatgcaacatg
actgagggtttttcagagcttactttggggagggtcccgaatttaaacga
ctctcttttttaaaaagaataaaatagtctatcagattatcccttcacac
acagagcagggggaaagggggaaaatgagttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77671411_77672248
seq2: B6Ng01-037F17.b_45_896 (reverse)

seq1  ACACAGCCATTAGATGGC-TAGCATTAGGACTGGTTTCTATGGTTGCAGA  49
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  ACACAGCAATTAGATGGCTTAGCATTAGGACTGGTTTCTATGGTTGCAGA  50

seq1  GTG-AAAGT-AGAGTTTGCCATTCA-TTTTCTAGTATACATAAGCAAGAA  96
      ||| ||||| ||||||||||||||| ||||||||||||||||||||  ||
seq2  GTGTAAAGTAAGAGTTTGCCATTCATTTTTCTAGTATACATAAGCAGAAA  100

seq1  AGAGACG-CAAGTC-TACTGA-GGGGCTTAC-AAATGCAGATACAGAGCC  142
      ||||||| |||||| |||||| ||||||||| ||||||||||||||||||
seq2  AGAGACGCCAAGTCTTACTGAGGGGGCTTACAAAATGCAGATACAGAGCC  150

seq1  A-GGAACGTAGGAACAGATAGGACAGG-AAACTAGAAACACAGACCTGGA  190
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGGAACGTAGGAACAGATAGGACAGGAAAACTAGAAACACAGACCTGGA  200

seq1  TGGAGAGAGGCAGAGATGCTGT-AAGTGAGATCTTG-AAGCATATTTCA-  237
      |||||||||||||||||||||| ||||||||||||| |||||||||||| 
seq2  TGGAGAGAGGCAGAGATGCTGTAAAGTGAGATCTTGAAAGCATATTTCAC  250

seq1  CCACATTCCTTCATTTGTTCAGGCACTTACATTAGTGGTGGTCTTAGGTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCCTTCATTTGTTCAGGCACTTACATTAGTGGTGGTCTTAGGTT  300

seq1  C-AAAGGTGATGCCTTCAATTCCAATAGAACACTTCTTGGTAGTACAGGC  336
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTGATGCCTTCAATTCCAATAGAACACTTCTTGGTAGTACAGGC  350

seq1  TTTGTAGAATTGTCACTTAAAAAGATGATTGTTGGTCAGAGGAAATGAAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAATTGTCACTTAAAAAGATGATTGTTGGTCAGAGGAAATGAAA  400

seq1  GGAAGAAAAGAGGAAAGAGAGAGAGAGAGAGCGCGAGATAGACAGACAGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAGAGGAAAGAGAGAGAGAGAGAGCGCGAGATAGACAGACAGA  450

seq1  CAGAGAGACAGAGAGATCAGAGAGACAGAGAGAACAAATGAATGAAACTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGATCAGAGAGACAGAGAGAACAAATGAATGAAACTT  500

seq1  TACTGTTTATTAAGGATGAGGCCTTAATTTATAATTAGGTGTTATAAATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTATTAAGGATGAGGCCTTAATTTATAATTAGGTGTTATAAATA  550

seq1  ACTCACAATGGAGTGGTTTTGCTTCCAGCGTGAACCATTTGATGGTCTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAATGGAGTGGTTTTGCTTCCAGCGTGAACCATTTGATGGTCTTA  600

seq1  TCTCATTCAGAGATACACCAGTTTACTGGTATTTCCAGACCTCAATTTAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCAGAGATACACCAGTTTACTGGTATTTCCAGACCTCAATTTAC  650

seq1  CAAACAGGACATCAGTACCTTGTAAGAATTAATGAAGCCTCTCAAGTGCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGACATCAGTACCTTGTAAGAATTAATGAAGCCTCTCAAGTGCC  700

seq1  TCTCCCCATTACATCAGAGTAGCAAGAGTGTCTATCCTTTATTATAAATG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATTACATCAGAGTAGCAAGAGTGTCTATCCTTTATTATAAATG  750

seq1  CTATGCTCAGACAGGATCTAAAATTTCTCCTAATGTTGTCCTGATAACAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCAGACAGGATCTAAAATTTCTCCTAATGTTGTCCTGATAACAC  800

seq1  TCATACTACATTATTATTACCATATTAAATTAAATGGAAGAGGATAGAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTACATTATTATTACCATATTAAATTAAATGGAAGAGGATAGAAT  850

seq1  TC  838
      ||
seq2  TC  852

seq1: chr1_77524426_77525160
seq2: B6Ng01-037F17.g_68_802

seq1  GAATTCATAACTCTCACAGTTAGAGAGGGAGGGTCTTCATAAATAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTCTCACAGTTAGAGAGGGAGGGTCTTCATAAATAAAACA  50

seq1  GCCCACTTACTTTTGCATCTTCCAAATAGCAAGGCAACTCACCCACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTACTTTTGCATCTTCCAAATAGCAAGGCAACTCACCCACCAAC  100

seq1  AGATGGACGCATATTTAATCAGTCAACTCATTGCTGTCTTTTGGTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACGCATATTTAATCAGTCAACTCATTGCTGTCTTTTGGTGAGAA  150

seq1  AATATATCTGCAGGTTACAACACTGGGTTAAAAAAATAAAACTAAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTGCAGGTTACAACACTGGGTTAAAAAAATAAAACTAAAATCT  200

seq1  CAGAATCATGGGTTTCATGAAAAGAATTATAAATTTTAATACTTTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATGGGTTTCATGAAAAGAATTATAAATTTTAATACTTTGATAA  250

seq1  CCTATTCAAATCTTGTATAGTGATAAATTAAACTAAATTATTGGTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAAATCTTGTATAGTGATAAATTAAACTAAATTATTGGTGGAAA  300

seq1  AACAAATCATGCAAAAATAATTTGGGGTTATTGTAAATCTGAGACATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCATGCAAAAATAATTTGGGGTTATTGTAAATCTGAGACATGAA  350

seq1  TAGAATTGCCATCAGTCTCAGGCTCCTTTCATGGTTATCTATTCTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGCCATCAGTCTCAGGCTCCTTTCATGGTTATCTATTCTAACTG  400

seq1  AGTTAAGTAAGCTGATGTGATCCAATTCAACTCAAGGCTGTTTGTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTAAGCTGATGTGATCCAATTCAACTCAAGGCTGTTTGTGCAAT  450

seq1  GCTGTTCAGAGATATTCTACAATATTATGCTTCTGTTCTTAATTTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCAGAGATATTCTACAATATTATGCTTCTGTTCTTAATTTGCATT  500

seq1  ATACTGACAAATAACTTCAGAAAAAGATGCTCTTTGTTTTGGAGAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACAAATAACTTCAGAAAAAGATGCTCTTTGTTTTGGAGAAATTA  550

seq1  CTCTAAAAATGAGAAGATAATATTTATCAAAGGAAGCCAGATGCAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAAATGAGAAGATAATATTTATCAAAGGAAGCCAGATGCAACATG  600

seq1  ACTGAGGG-TTTTCAGAGCTTACTTT-GGGAGGGTCCCGAATTTAAACGA  648
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGAGGGTTTTTCAGAGCTTACTTTGGGGAGGGTCCCGAATTTAAACGA  650

seq1  CTCTC-TTTTTAAAAAGAATAAAATAGTCTATCAGATTATCCCTTCACAC  697
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTTTAAAAAGAATAAAATAGTCTATCAGATTATCCCTTCACAC  700

seq1  ACAGAGCAGGGGG-AAGGGGGAAAATGAGGTAATTATTT  735
      ||||||||||||| |||||||||||||||    ||||||
seq2  ACAGAGCAGGGGGAAAGGGGGAAAATGAG----TTATTT  735