BAC Information

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BAC

Clone NameB6Ng01-037G22
Chromosome1 (Build37)Y (Build37)
Map Location 14,668,793 - 14,669,7831,870,346 - 1,870,429
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneXkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037G22.bB6Ng01-037G22.g
ACCDH865295DH865296
length994357
definitionDH865295|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G22, 5' end.DH865296|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,668,793 - 14,669,783)(1,870,346 - 1,870,429)
sequence
gaattccttgcagcttctgaagtgtggctcacaatacttggtaccatcat
gcatacgactaccaagaaagaaaagtagacaacgctgctggttgcccatg
taaaacaccatcccctgcagagcagtgatgcaatcagaacaaaaaagact
ccgctccaaaagagtgtgagtcttaaacccttcctgaacaggcctagtgg
tgagagtgggacccgaagcaaaccgctgtcagataagtaactaaaattaa
ctttttttcacaattggaaaaacacatagtacaggattattaaagtaaat
tatgtcactcaaacaagagaaggagcttgttgtcagtgaccggttttggg
aattcagtgtccaggcagaaaaagccaggaagaattctccccttctactc
tccttttctgtgtgttccagagccatcgctcctaagtggcacaaagacat
aattcatcctcctacatatggactgggaggtaacccaacccaggaccaat
attaattctttgtttgtgagctcttaaccatgtaattgtttttaacgact
agcaggtggctcagagtttccaggtttacaggaccttaaattctatacgt
agagaaattagtcaatattagagactcggggctccaggtaagactacaaa
acactacctttcatgacaaaataagaattcagctcactggcaacagagca
ggggagatgaggcattgtggactgagatccaaacaaggtcagggagtcag
cattccctcctggaaaagatgtgtgcttgctttcccttggtcctgagagc
agatgtcttcccagaaatgcacgttcaacattcaagtgaattgtcttgca
tttgttttatgtgtatatatttgggagacagaatttcattgtatagccca
ggcttgtacttacaatgtcacacatcctgccacatgtaaggtcagtcagt
gccagttagcctggggtctgttatttctttttctccccttcctt
tttgtttagctctgagccccatttttaatggggttatttgattttttgga
gtccacagatgaaaggatgaaccatatagagactgccatatctggggatc
catcccataatcagcttccaaacgctgacaccattgcatacactatcaag
attttgctgaaaggacccatatacagctatctcttgtgagactattccgg
ggcctagcatacacagaagtggatgctcacagtcagctattgggtggatc
acagggctcccaatggaggagctagagaaagtacccaaggagctgaaggg
atctgcaaccctataggtggaacagcaatatgaactaaccagtacccctt
ggagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14668793_14669783
seq2: B6Ng01-037G22.b_46_1039 (reverse)

seq1  AAGGAAGGGGAAGAAAAAAGAAAAATAACAGAACCCCAGGCTCACTGGCA  50
      |||||||||| ||||||   | ||||||||| |||||||||| |||||| 
seq2  AAGGAAGGGG-AGAAAA---AGAAATAACAG-ACCCCAGGCTAACTGGC-  44

seq1  ACTGACTGAGCTTGACATGGTGGCAGAATGTGTGACATTGTAAGTAC-AG  99
      ||||||||| ||| |||| ||||||| |||||||||||||||||||| ||
seq2  ACTGACTGACCTT-ACAT-GTGGCAGGATGTGTGACATTGTAAGTACAAG  92

seq1  CCTGGGCTATACAATGAAATTCTGTCT-CCAAATATATACACATAAAACA  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTGGGCTATACAATGAAATTCTGTCTCCCAAATATATACACATAAAACA  142

seq1  AATGCAAGAACAATTCACTTGAATGT--GACGTGCATATCTGGGAAGACA  196
      |||||||| |||||||||||||||||   |||||||| ||||||||||||
seq2  AATGCAAG-ACAATTCACTTGAATGTTGAACGTGCATTTCTGGGAAGACA  191

seq1  TCTGCTCTCAGGACCA--GGGAAGCAAGCACACATCTTTTCCAGGAGGGA  244
      ||||||||||||||||  || |||||||||||||||||||||||||||||
seq2  TCTGCTCTCAGGACCAAGGGAAAGCAAGCACACATCTTTTCCAGGAGGGA  241

seq1  ATGCTGACT-CCTGA-CTTGTTTGGATCTCAGTCCACAATGCCTCATCT-  291
      ||||||||| ||||| ||||||||||||||||||||||||||||||||| 
seq2  ATGCTGACTCCCTGACCTTGTTTGGATCTCAGTCCACAATGCCTCATCTC  291

seq1  CCCTGCTCTGTTGCCAGTGAGCTGAATTCTTA-TTTGTCATGAAAGGTAG  340
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTGCTCTGTTGCCAGTGAGCTGAATTCTTATTTTGTCATGAAAGGTAG  341

seq1  TGTTTTGTAGTCTTACCTGGAGCCCCGAGTCTCTAATATTGACTAATTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAGTCTTACCTGGAGCCCCGAGTCTCTAATATTGACTAATTTC  391

seq1  TCTACGTATAGAATTTAAGGTCCTGTAAACCTGG-AACTCTGAGCCACCT  439
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTACGTATAGAATTTAAGGTCCTGTAAACCTGGAAACTCTGAGCCACCT  441

seq1  GCTAGTCGTT-AAAACAATTACATGGTTAAGAGCTCACAAACAAAGAATT  488
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCGTTAAAAACAATTACATGGTTAAGAGCTCACAAACAAAGAATT  491

seq1  AATATTGGTCCTGGGTTGGGTTACCTCCCAGTCCATATGTAGGAGGATGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGTCCTGGGTTGGGTTACCTCCCAGTCCATATGTAGGAGGATGA  541

seq1  ATTATGTCTTTGTGCCACTTAGGAGCGATGGCTCTGGAACACACAGAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCTTTGTGCCACTTAGGAGCGATGGCTCTGGAACACACAGAAAA  591

seq1  GGAGAGTAGAAGGGGAGAATTCTTCCTGGCTTTTTCTGCCTGGACACTGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTAGAAGGGGAGAATTCTTCCTGGCTTTTTCTGCCTGGACACTGA  641

seq1  ATTCCCAAAACCGGTCACTGACAACAAGCTCCTTCTCTTGTTTGAGTGAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAAACCGGTCACTGACAACAAGCTCCTTCTCTTGTTTGAGTGAC  691

seq1  ATAATTTACTTTAATAATCCTGTACTATGTGTTTTTCCAATTGTGAAAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACTTTAATAATCCTGTACTATGTGTTTTTCCAATTGTGAAAAA  741

seq1  AAGTTAATTTTAGTTACTTATCTGACAGCGGTTTGCTTCGGGTCCCACTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTTTAGTTACTTATCTGACAGCGGTTTGCTTCGGGTCCCACTC  791

seq1  TCACCACTAGGCCTGTTCAGGAAGGGTTTAAGACTCACACTCTTTTGGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTAGGCCTGTTCAGGAAGGGTTTAAGACTCACACTCTTTTGGAG  841

seq1  CGGAGTCTTTTTTGTTCTGATTGCATCACTGCTCTGCAGGGGATGGTGTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTCTTTTTTGTTCTGATTGCATCACTGCTCTGCAGGGGATGGTGTT  891

seq1  TTACATGGGCAACCAGCAGCGTTGTCTACTTTTCTTTCTTGGTAGTCGTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGGCAACCAGCAGCGTTGTCTACTTTTCTTTCTTGGTAGTCGTA  941

seq1  TGCATGATGGTACCAAGTATTGTGAGCCACACTTCAGAAGCTGCAAGGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATGGTACCAAGTATTGTGAGCCACACTTCAGAAGCTGCAAGGAA  991

seq1  TTC  991
      |||
seq2  TTC  994

seq1: chrY_1870346_1870429
seq2: B6Ng01-037G22.g_342_427

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTGAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCT--GAGCTC  84
      ||| || ||||||||||||| |||||||  ||||||
seq2  ACAGCAATATGAACTAACCAGTACCCCTTGGAGCTC  86