BAC Information

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BAC

Clone NameB6Ng01-037H05
Chromosome1 (Build37)
Map Location 184,364,997 - 184,483,768
singlet/doubletdoublet
Overlap geneTrp53bp2, Capn2, LOC666624
Upstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482
Downstream geneCapn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H05.bB6Ng01-037H05.g
ACCDH865307DH865308
length840783
definitionDH865307|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H05, 5' end.DH865308|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(184,364,997 - 184,365,831)(184,482,989 - 184,483,768)
sequence
gaattcaaagagctcactgggcttggcagcaaacaccttattaacctgtg
gagatgtcactgatccccagccctctttttattttgagacaggcaggttt
tggacctggccttctcttggttgagcctcgtgagtagctgagactgtagg
tctgtgccagcaggtccccatgaagctctttcctcactgcatggcccaga
ccaggaggaacgagtataagtaaaaggtgtgaattggttggagtcagagg
tacagtaacttcccaccattgttgagtgactcgagcagcttcctagggag
tggtgggatgtgaaatgccttgatgctagtcactgtttcacaaagttgca
ttttcaattaggagacctaacctccattgctgttaagtatagctacccaa
gtatcaaacagcagtaaaacagaaacaaacgctacatagacttctgtcag
ctttgatgttaatgcagttttttaatctgtatttagtgagtggaccgaga
tcccaagatccaagtgtaaaaagaaatggtgtcaaagttcccggcgagca
tcggaggaaggagaatggggtaagtgttccttttgttatcttgtttctgt
gccacagtgatgctcttaaatgatgcatctcattttattgtcattttctt
attcagcagattaatgggtgaccccttttaagggctttttcttaaaatta
tttttaaattgtaaaaaaaattaaattattagttattttcagggggatgg
gtccaaagggtatcatatcaccttgagctggagttcacacagttgtgatc
tgctgactgtgggtgctggaaatgaccttagtcttctgct
gaattctaggacacccaggactaccttgtcccaaacagataggtaggtag
atagatagatagatagatagatagatataaaaatttaattcaaaataaga
ataattgataattccagctagtcaggtgacaaaagttaacactttgcagc
ccctaatggcataatggatgagaagctgacaccaaggatgctggcatgat
tagaggaaaggctaagaagaagcttcgggacagatggagcaggctgagat
acccaagcctccttgtcattctgagcatctgtgccctggacaccactgtc
ttgtgacacgctaaaacaagctggcctgagccacctgagagcaaccctga
cttctccaaaactcccagggtaactgtcagtgtggaggaataggagatcg
agacgggtttctcaacctctgcctgactgacattatggtctaggtgacca
taaagtatcagaataactaagtaacctgcctagtggtgaaatagaataat
ttgaaagagttgatcaaagagaaaacgcatacagagaaggaaaagagcat
agaaacagtaaggcaaataaaaaaggaagcgtgaggtttagacaccaata
aatcagcagttacgttgggtctcagtaactatgctttgaaaacaaaactt
ttgttgggctgtagccctgtgtacagcataggctcaagacctgttctagt
ttcattcgggctgccgctgtgataaagcagtctacccaaaagcagcttgg
gggagggagagggctacagctttgcttcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_184364997_184365831
seq2: B6Ng01-037H05.b_46_885

seq1  GAATTCAAAGAGCTCACTGGGCTTGGCAGCAAACACCTTATTAACCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGCTCACTGGGCTTGGCAGCAAACACCTTATTAACCTGTG  50

seq1  GAGATGTCACTGATCCCCAGCCCTCTTTTTATTTTGAGACAGGCAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCACTGATCCCCAGCCCTCTTTTTATTTTGAGACAGGCAGGTTT  100

seq1  TGGACCTGGCCTTCTCTTGGTTGAGCCTCGTGAGTAGCTGAGACTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTGGCCTTCTCTTGGTTGAGCCTCGTGAGTAGCTGAGACTGTAGG  150

seq1  TCTGTGCCAGCAGGTCCCCATGAAGCTCTTTCCTCACTGCATGGCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCAGCAGGTCCCCATGAAGCTCTTTCCTCACTGCATGGCCCAGA  200

seq1  CCAGGAGGAACGAGTATAAGTAAAAGGTGTGAATTGGTTGGAGTCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAACGAGTATAAGTAAAAGGTGTGAATTGGTTGGAGTCAGAGG  250

seq1  TACAGTAACTTCCCACCATTGTTGAGTGACTCGAGCAGCTTCCTAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAACTTCCCACCATTGTTGAGTGACTCGAGCAGCTTCCTAGGGAG  300

seq1  TGGTGGGATGTGAAATGCCTTGATGCTAGTCACTGTTTCACAAAGTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGATGTGAAATGCCTTGATGCTAGTCACTGTTTCACAAAGTTGCA  350

seq1  TTTTCAATTAGGAGACCTAACCTCCATTGCTGTTAAGTATAGCTACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTAGGAGACCTAACCTCCATTGCTGTTAAGTATAGCTACCCAA  400

seq1  GTATCAAACAGCAGTAAAACAGAAACAAACGCTACATAGACTTCTGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAACAGCAGTAAAACAGAAACAAACGCTACATAGACTTCTGTCAG  450

seq1  CTTTGATGTTAATGCAGTTTTTTAATCTGTATTTAGTGAGTGGACCGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGTTAATGCAGTTTTTTAATCTGTATTTAGTGAGTGGACCGAGA  500

seq1  TCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGATCCAAGTGTAAAAAGAAATGGTGTCAAAGTTCCCGGCGAGCA  550

seq1  TCGGAGGAAGGAGAATGGGGTAAGTGTTCC-TTTGTTATCTTG-TTCTGT  598
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TCGGAGGAAGGAGAATGGGGTAAGTGTTCCTTTTGTTATCTTGTTTCTGT  600

seq1  GCCACAGTGATGCTCTTAAATGATGCATCTCA-TTTATTGTCATTTTCTT  647
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCACAGTGATGCTCTTAAATGATGCATCTCATTTTATTGTCATTTTCTT  650

seq1  ATTCAGCAGATTAAT-GGTGACCCCTTTTAAGGGCTTTTTCTTAAAATTA  696
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGATTAATGGGTGACCCCTTTTAAGGGCTTTTTCTTAAAATTA  700

seq1  TTTTTAAA-TGTAAAAAAA--TTAATTATTAGTTA-TTTCAGGGGGATGG  742
      |||||||| ||||||||||  | |||||||||||| ||||||||||||||
seq2  TTTTTAAATTGTAAAAAAAATTAAATTATTAGTTATTTTCAGGGGGATGG  750

seq1  GTCAGAGGGGTATCAGATCACCTGGAGCTGGAGTTACACACAGTTGTGAG  792
      |||  | |||||||| ||||||| ||||||||||| ||||||||||||| 
seq2  GTCCAAAGGGTATCATATCACCTTGAGCTGGAGTT-CACACAGTTGTGAT  799

seq1  CTGCTGACTGTGGGTGCTGGGAATTGAACCTGAGTCTTCTGCT  835
      |||||||||||||||||||| |||   |||| |||||||||||
seq2  CTGCTGACTGTGGGTGCTGGAAAT--GACCTTAGTCTTCTGCT  840

seq1: chr1_184482989_184483768
seq2: B6Ng01-037H05.g_72_854 (reverse)

seq1  AAAAGGAAGCAAAGCTGTAGCCCTCTCCCT-CCCCAAGCTGCTTTTGGGT  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAGGAAGCAAAGCTGTAGCCCTCTCCCTCCCCCAAGCTGCTTTTGGGT  50

seq1  AGACTGCTTTATCACAGCGGCAG-CCGAATGAAACTAGAACAGGTCTTGA  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACTGCTTTATCACAGCGGCAGCCCGAATGAAACTAGAACAGGTCTTGA  100

seq1  GCCTATGCTGTACACAGGGCTACAGCCCAAC-AAAGTTTTGTTTTCAAAG  147
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTATGCTGTACACAGGGCTACAGCCCAACAAAAGTTTTGTTTTCAAAG  150

seq1  CATAGTTACTGAGACCCAACGTAACTGCTGATTTATTGGTGTCTAAACCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTACTGAGACCCAACGTAACTGCTGATTTATTGGTGTCTAAACCT  200

seq1  CACGCTTCCTTTTTTATTTGCCTTACTGTTTCTATGCTCTTTTCCTTCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTCCTTTTTTATTTGCCTTACTGTTTCTATGCTCTTTTCCTTCTC  250

seq1  TGTATGCGTTTTCTCTTTGATCAACTCTTTCAAATTATTCTATTTCACCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCGTTTTCTCTTTGATCAACTCTTTCAAATTATTCTATTTCACCA  300

seq1  CTAGGCAGGTTACTTAGTTATTCTGATACTTTATGGTCACCTAGACCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGGTTACTTAGTTATTCTGATACTTTATGGTCACCTAGACCATA  350

seq1  ATGTCAGTCAGGCAGAGGTTGAGAAACCCGTCTCGATCTCCTATTCCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTCAGGCAGAGGTTGAGAAACCCGTCTCGATCTCCTATTCCTCC  400

seq1  ACACTGACAGTTACCCTGGGAGTTTTGGAGAAGTCAGGGTTGCTCTCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACAGTTACCCTGGGAGTTTTGGAGAAGTCAGGGTTGCTCTCAGG  450

seq1  TGGCTCAGGCCAGCTTGTTTTAGCGTGTCACAAGACAGTGGTGTCCAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGCCAGCTTGTTTTAGCGTGTCACAAGACAGTGGTGTCCAGGG  500

seq1  CACAGATGCTCAGAATGACAAGGAGGCTTGGGTATCTCAGCCTGCTCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCTCAGAATGACAAGGAGGCTTGGGTATCTCAGCCTGCTCCAT  550

seq1  CTGTCCCGAAGCTTCTTCTTAGCCTTTCCTCTAATCATGCCAGCATCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCGAAGCTTCTTCTTAGCCTTTCCTCTAATCATGCCAGCATCCTT  600

seq1  GGTGTCAGCTTCTCATCCATTATGCCATTAGGGGCTGCAAAGTGTTAACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGCTTCTCATCCATTATGCCATTAGGGGCTGCAAAGTGTTAACT  650

seq1  TTTGTCACCTGACTAGCTGGAATTATCAATTATTCTTATTTTGAATTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACCTGACTAGCTGGAATTATCAATTATTCTTATTTTGAATTAAA  700

seq1  TTTTTATATCTATCTATCTATCTATCTATCTATCTACCTACCTATCTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCTATCTATCTATCTATCTATCTATCTACCTACCTATCTGTT  750

seq1  TGGGACAAGGTAGTCCTGGGTGTCCTAGAATTC  780
      |||||||||||||||||||||||||||||||||
seq2  TGGGACAAGGTAGTCCTGGGTGTCCTAGAATTC  783