BAC Information

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BAC

Clone NameB6Ng01-037K01
Chromosome1 (Build37)
Map Location 181,940,299 - 182,091,711
singlet/doubletdoublet
Overlap geneCdc42bpa
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037K01.bB6Ng01-037K01.g
ACCDH865428DH865429
length1,078958
definitionDH865428|Mus musculus domesticus DNA, BAC clone: B6Ng01-037K01, 5' end.DH865429|Mus musculus domesticus DNA, BAC clone: B6Ng01-037K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(182,090,631 - 182,091,711)(181,940,299 - 181,941,261)
sequence
gaattccctctttagtgcactgccattctgggctgacgaccctacaggac
aatggttgggaagaactatgtattcagaagaggccacacctctataaagt
gtacaggcttccaagaagacagaagtcccatgcggaaggttgtttctgtt
gtcctctggctatgggactactggtgtttagacagcagtccccaggccct
gtggtgcccatggaatccttccagtgccatctgccattgccagggtgccc
tcagcatcgtcataccacagacatgttgggctttcttctaacagatgggg
catctgcctacccagacctcacagaggctcctaagacatgggctgcactc
tcagaagcacacagccatccccaggcaaatgctgcctttcagaaactctc
atagaaaacagaacacaagaaagcactcttatttcatagcttgagaggaa
cactttgggggttactttgagggcaccctcaaatgctgacctaagagctg
ggacatatagcaaggggaccagtggcactgacaacaagagaagaaccctt
ggaaacatgacaagtactgttagtgcccatttaaaagtgttccacgtttc
tcattatgctttagtctttgcttaagaaaagttttaattttattaagttt
catgactggtgaaggacactgagttatagactgttttcaatgtattactg
attttgttaactgccttttacattaagaatccaacaaaactgtcaccata
caattgtatgtccagctactgaccaccaactgtgtcagtgctcagaaggc
actgcagaagcacacccggcagactttctcaatgcccccgaggcccttcc
cttcctaagccctcacagccttcaccatcccctgactccttccagacact
accactactgcttgtaaactggtgttctagaattatagtacctagtcctt
gccaatggttgtagtaggtagcttgatgctggttgtatctaaactaaaat
tgggttcccagactggttgcccagagatgagaaagctgcacttagaggct
aaagtgaccccgtcccccaagtaatttt
gaattcatctgcaagttctctgaatccttttaactatgctgggcaataga
gaaggagggacccagtggctccctcactttatgagaccagagtaaccaac
cttgtcctaaaacctgacaatgtggggtgaaggaagcgacataggaacga
ctacatatcactaaagtcaaggataataactgtcagttttgggaagctgg
agttgtagtgcacataggagggtttctgagttgtagtgcacaagagagtg
tttctgggctgtacacttaggaatgtttctgggttgtactgcagcctagg
aacagttctggtttgctgcaagcttgtacatcttgagctgggttttactc
actgggtactttataattgtgtttaattttctctctctctctctctctct
ctctctctctctctctctatatatatatatatatacacacacacacatat
atatatataattttatatctacctgttaaaattataaaaattctaaattt
ttattgaaaatagatatattagtcagggttctctagagtcacagaactta
cagatagtctctagatagtaaaggaatttattgatgacttacagtcggca
gccaattcccaacaattgttcagtcgcagctgtgaatggaagtccaaaga
tctagcagttactcagtctcacgcagcaagcaggcgaaggagcaagagca
agagctagagctagactccctttcttccaatgttccttatattgtctcca
gcagaaaggtggtagcccagattaaaggtgtgttccaccacacctttaat
cccagatgaaaggcatagcccagattaaaggtgtgtccttaaactcgatg
attcatcttctggaatccatagcccatggctcaagatcttcataccagat
ccagatatgatctccagcctccatataagggcctctggtgagcctccatt
ccggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182090631_182091711
seq2: B6Ng01-037K01.b_47_1123 (reverse)

seq1  AAATAACTTGGGGG-CAGGGTCAC-TTAGCATCTAAGTGCAGACTCTCTC  48
      |||| ||||||||| | ||||||| ||||| ||||||||||| || ||||
seq2  AAATTACTTGGGGGACGGGGTCACTTTAGCCTCTAAGTGCAG-CTTTCTC  49

seq1  ATCTCTGGGGCAACCAGTCTTGGGAACCCAATTTTAGTTTTAGAATACAA  98
      |||||| |||||||||||| ||||||||||||||||| ||||| ||||||
seq2  ATCTCT-GGGCAACCAGTC-TGGGAACCCAATTTTAG-TTTAG-ATACAA  95

seq1  ACAGCATCAGGCTAACCTACTACAACCATTTGGCAAGGACCTAGGTACTA  148
       |||||||| ||| |||||||||||||| |||||||||| ||||||||||
seq2  CCAGCATCAAGCT-ACCTACTACAACCA-TTGGCAAGGA-CTAGGTACTA  142

seq1  TATTTCTAGAACACCAGTTTACAAGCAGTAGTGGTAGTGTCTGGAAGGAG  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTAGAACACCAGTTTACAAGCAGTAGTGGTAGTGTCTGGAAGGAG  192

seq1  TCA-GGGATGGTG-AGGCTGTGAGGGCTTAGGGAGGGAAGGGCCTCGGGG  246
      ||| ||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TCAGGGGATGGTGAAGGCTGTGAGGGCTTAGGAAGGGAAGGGCCTCGGGG  242

seq1  GCATTGAGAACAGTCTGCCGGGTGTGCTTCTGCAGTGCCTTCTGAGCACT  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGAA-AGTCTGCCGGGTGTGCTTCTGCAGTGCCTTCTGAGCACT  291

seq1  GACACAGTTGGTGGTCAGTAGCTGGACATACAATTGTATGGTGACAGTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTTGGTGGTCAGTAGCTGGACATACAATTGTATGGTGACAGTTT  341

seq1  TGTTGGATTCTTAATGTAAAAGGCAGTTAACAAAATCAGTAATACATTG-  395
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTTGGATTCTTAATGTAAAAGGCAGTTAACAAAATCAGTAATACATTGA  391

seq1  AAACAGTCTATAACTCAGTGTCCTTCACCAGTCATGAAACTTAATAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTATAACTCAGTGTCCTTCACCAGTCATGAAACTTAATAAAAT  441

seq1  TAAAACTTTTCTTAAGCAAAGACTAAAGCATAATGAGAAACGTGGAACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTTCTTAAGCAAAGACTAAAGCATAATGAGAAACGTGGAACAC  491

seq1  TTTTAAATGGGCACTAACAGTACTTGTCATGTTTCCAAGGGTTCTTCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGGGCACTAACAGTACTTGTCATGTTTCCAAGGGTTCTTCTCT  541

seq1  TGTTGTCAGTGCCACTGGTCCCCTTGCTATATGTCCCAGCTCTTAGGTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGTGCCACTGGTCCCCTTGCTATATGTCCCAGCTCTTAGGTCA  591

seq1  GCATTTGAGGGTGCCCTCAAAGTAACCCCCAAAGTGTTCCTCTCAAGCTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGAGGGTGCCCTCAAAGTAACCCCCAAAGTGTTCCTCTCAAGCTA  641

seq1  TGAAATAAGAGTGCTTTCTTGTGTTCTGTTTTCTATGAGAGTTTCTGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAGAGTGCTTTCTTGTGTTCTGTTTTCTATGAGAGTTTCTGAAA  691

seq1  GGCAGCATTTGCCTGGGGATGGCTGTGTGCTTCTGAGAGTGCAGCCCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTTGCCTGGGGATGGCTGTGTGCTTCTGAGAGTGCAGCCCATG  741

seq1  TCTTAGGAGCCTCTGTGAGGTCTGGGTAGGCAGATGCCCCATCTGTTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGAGCCTCTGTGAGGTCTGGGTAGGCAGATGCCCCATCTGTTAGA  791

seq1  AGAAAGCCCAACATGTCTGTGGTATGACGATGCTGAGGGCACCCTGGCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCCAACATGTCTGTGGTATGACGATGCTGAGGGCACCCTGGCAA  841

seq1  TGGCAGATGGCACTGGAAGGATTCCATGGGCACCACAGGGCCTGGGGACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATGGCACTGGAAGGATTCCATGGGCACCACAGGGCCTGGGGACT  891

seq1  GCTGTCTAAACACCAGTAGTCCCATAGCCAGAGGACAACAGAAACAACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTAAACACCAGTAGTCCCATAGCCAGAGGACAACAGAAACAACCT  941

seq1  TCCGCATGGGACTTCTGTCTTCTTGGAAGCCTGTACACTTTATAGAGGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCATGGGACTTCTGTCTTCTTGGAAGCCTGTACACTTTATAGAGGTG  991

seq1  TGGCCTCTTCTGAATACATAGTTCTTCCCAACCATTGTCCTGTAGGGTCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTTCTGAATACATAGTTCTTCCCAACCATTGTCCTGTAGGGTCG  1041

seq1  TCAGCCCAGAATGGCAGTGCACTAAAGAGGGAATTC  1081
      ||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCAGAATGGCAGTGCACTAAAGAGGGAATTC  1077

seq1: chr1_181940299_181941261
seq2: B6Ng01-037K01.g_69_1026

seq1  GAATTCATCTGCAAGTTCTCTGAATCCTTTTAACTATGCTGGGCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGCAAGTTCTCTGAATCCTTTTAACTATGCTGGGCAATAGA  50

seq1  GAAGGAGGGACCCAGTGGCTCCCTCACTTTATGAGACCAGAGTAACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGACCCAGTGGCTCCCTCACTTTATGAGACCAGAGTAACCAAC  100

seq1  CTTGTCCTAAAACCTGACAATGTGGGGTGAAGGAAGCGACATAGGAACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTAAAACCTGACAATGTGGGGTGAAGGAAGCGACATAGGAACGA  150

seq1  CTACATATCACTAAAGTCAAGGATAATAACTGTCAGTTTTGGGAAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATCACTAAAGTCAAGGATAATAACTGTCAGTTTTGGGAAGCTGG  200

seq1  AGTTGTAGTGCACATAGGAGGGTTTCTGAGTTGTAGTGCACAAGAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGTGCACATAGGAGGGTTTCTGAGTTGTAGTGCACAAGAGAGTG  250

seq1  TTTCTGGGCTGTACACTTAGGAATGTTTCTGGGTTGTACTGCAGCCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCTGTACACTTAGGAATGTTTCTGGGTTGTACTGCAGCCTAGG  300

seq1  AACAGTTCTGGTTTGCTGCAAGCTTGTACATCTTGAGCTGGGTTTTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTGGTTTGCTGCAAGCTTGTACATCTTGAGCTGGGTTTTACTC  350

seq1  ACTGGGTACTTTATAATTGTGTTTAATTTTCTCTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTACTTTATAATTGTGTTTAATTTTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTATATATATATATATATACACACACACACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTATATATATATATATATACACACACACACATAT  450

seq1  ATATATATAATTTTATATCTACCTGTTAAAATTATAAAAATTCTAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAATTTTATATCTACCTGTTAAAATTATAAAAATTCTAAATTT  500

seq1  TTATTGAAAATAGATATATTAGTCAGGGTTCTCTAGAGTCACAGAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAAATAGATATATTAGTCAGGGTTCTCTAGAGTCACAGAACTTA  550

seq1  CAGATAGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGTCGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGTCGGCA  600

seq1  GCCAATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAAGTCCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCAATTCCCAACAATTGTTCAGTCGCAGCTGTGAATGGAAGTCCAAAGA  650

seq1  TCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGTTACTCAGTCTCACGCAGCAAGCAGGCGAAGGAGCAAGAGCA  700

seq1  AGAGCTAGAGCTAGACTCCC-TTCTTCCAATG-TCCTTATATTGTCTCCA  748
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AGAGCTAGAGCTAGACTCCCTTTCTTCCAATGTTCCTTATATTGTCTCCA  750

seq1  GCAG-AAGGTGG-AGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAAT  796
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGTGGTAGCCCAGATTAAAGGTGTGTTCCACCACACCTTTAAT  800

seq1  CCCAGATGAAAGGCATAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGA  846
      ||||||||||||||||||||||||||||||||||| ||||||||||||  
seq2  CCCAGATGAAAGGCATAGCCCAGATTAAAGGTGTG-TCCTTAAACTCGAT  849

seq1  GATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTTCAAACC  896
      ||||| |||||||||||||||||||  | ||||||||||||||||| |||
seq2  GATTC-ATCTTCTGGAATCCATAGC--CCATGGCTCAAGATCTTCATACC  896

seq1  AAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGC  946
       |||||||||| | ||||||| |||||||| ||||||| | |||||||||
seq2  -AGATCCAGAT-ATGATCTCC-AGCCTCCATATAAGGGCCTCTGGTGAGC  943

seq1  CTTCCAATTCCGGATTG  963
      ||  | |||||||||||
seq2  CT--CCATTCCGGATTG  958