BAC Information

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BAC

Clone NameB6Ng01-038C15
Chromosome1 (Build37)
Map Location 31,331,338 - 31,482,001
singlet/doubletdoublet
Overlap geneEG624262
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038C15.bB6Ng01-038C15.g
ACCDH865812DH865813
length8031,069
definitionDH865812|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C15, 5' end.DH865813|Mus musculus domesticus DNA, BAC clone: B6Ng01-038C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,481,200 - 31,482,001)(31,331,338 - 31,332,425)
sequence
gaattctacatgtctgtagatgttcagtaacagggcttctccatgtctac
agatgtaatttgtgataacgttcagtaacagagtcttaccatcaagttct
gggggatatgcaagagtaatgacaatagtgtgtaacatataagtgataag
tagtgtgtaatgatgcttactgtgtgtgtgtatgtgggcatgtatgtgtg
tgtgtatgtatgtgtgtgcatgcctgtgtacaattatatacaaaaataca
tagccactaatatactaaataaagaaaaatttaaattaatgagtcaatga
caactattctatctccatttattcaggatattgtatgaaatcttagcttc
aacaatgagatgagagtaagaaatcaaagagatgtaaatatgaaagaaag
aagtcaaattacacctactggcagatagtaatccatcagaaaactcttat
atttgataaacacttttagtaaattcttaggacgcagcatcaagaaagat
cagtaacctccctttaaatcagtggttgagaaggaaatcagaagattaat
gcccaaggagattaaatataaagtacctatggaaaaataatccaactgag
atgattctacactcaaaaccttgagaaaccaaaaacagaaagctgatcaa
gtcatgggaagcaagccaataagcagcacaccctccactgtctctgcata
agctcctgcctccaggttccagtcctgcttgaattccactctttgttgtt
gttgttgttgttgttgtttgttgcccacttctagaagggaccaaattatc
cat
gaattctctcctctgactctggcacccagagactggactcagcatactga
gtttgcttcttccaatatttgcaattttttttcctttttgaaactggagt
atttgaaactgtgtttgagtaggaatcattctgagtagaccagaatgcta
tttgactagttctatcattcgcaaaatggagattagtcacagctacatat
actggttaaatttaaacctttgtgggtatatactgattaagttcaaactt
cttgattttcctaatcaagttttcagaaactcttccctattgtttaatga
tgcaatgtgctgaaataacaaatgtactttcaacaaaaaataaaattttg
ttttcaaatcaggtaaacttgatctaagaccaaaatccatgcctgcccag
gctgacaaaatgaacatgactttggaagacatcattaagctgaataagat
ccagcaaagacgtcacaacaggcctgatccccgaatgaatcgaggcgctg
ggcctaagaggtacaggcccgccatcacccatagtggcaggaacaggctg
gcaccataccgcagaccaaaacttcttccagacaagtggcagcatgaccg
attcgttggctgcttcagggctggaaaccacatggatactagtgggaagc
tgctcctgtcaaacctgcactacagagtgtcagatgctgatatccggaaa
ctctttttctgaatttggaacgttgagaaaatatgctgtgcactatgatg
gctctggacgaagtttagggacagcacatgtgcactttgaaaggaaggca
gatgccctgaaggctatgagacagtacaatggcatccctttggatggccg
ccctatgaacattcagcttgtcacctcacagactgatatacaacgaagac
ctgcacaaaacagaaacagggacaccattacaagaaaccctggctctgga
ggtttagtgtgatggtggattcatctttgattctttattcattcttattt
cccttttaaactcatgaaactctttcttcctctttctccctccttctctc
tcttttttttctttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31481200_31482001
seq2: B6Ng01-038C15.b_50_852 (reverse)

seq1  ATGGATAATTTGGTCCTTCTTAGAAGTGGGCAAC-AACAACAACAACAAC  49
      |||||||||||||||| |  |||||||||||||| |||||||||||||||
seq2  ATGGATAATTTGGTCCCTTCTAGAAGTGGGCAACAAACAACAACAACAAC  50

seq1  AACAACAACAAAGAGTGGAATTCAAGCAGGACTGGAACCTGGAGGCAGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAAGAGTGGAATTCAAGCAGGACTGGAACCTGGAGGCAGGA  100

seq1  GCTTATGCAGAGACAGTGGAGGGTGTGCTGCTTATTGGCTTGCTTCCCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGCAGAGACAGTGGAGGGTGTGCTGCTTATTGGCTTGCTTCCCAT  150

seq1  GACTTGATCAGCTTTCTGTTTTTGGTTTCTCAAGGTTTTGAGTGTAGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATCAGCTTTCTGTTTTTGGTTTCTCAAGGTTTTGAGTGTAGAAT  200

seq1  CATCTCAGTTGGATTATTTTTCCATAGGTACTTTATATTTAATCTCCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTTGGATTATTTTTCCATAGGTACTTTATATTTAATCTCCTTG  250

seq1  GGCATTAATCTTCTGATTTCCTTCTCAACCACTGATTTAAAGGGAGGTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAATCTTCTGATTTCCTTCTCAACCACTGATTTAAAGGGAGGTTA  300

seq1  CTGATCTTTCTTGATGCTGCGTCCTAAGAATTTACTAAAAGTGTTTATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTTCTTGATGCTGCGTCCTAAGAATTTACTAAAAGTGTTTATCA  350

seq1  AATATAAGAGTTTTCTGATGGATTACTATCTGCCAGTAGGTGTAATTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGAGTTTTCTGATGGATTACTATCTGCCAGTAGGTGTAATTTGA  400

seq1  CTTCTTTCTTTCATATTTACATCTCTTTGATTTCTTACTCTCATCTCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTTCATATTTACATCTCTTTGATTTCTTACTCTCATCTCATT  450

seq1  GTTGAAGCTAAGATTTCATACAATATCCTGAATAAATGGAGATAGAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGCTAAGATTTCATACAATATCCTGAATAAATGGAGATAGAATAG  500

seq1  TTGTCATTGACTCATTAATTTAAATTTTTCTTTATTTAGTATATTAGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGACTCATTAATTTAAATTTTTCTTTATTTAGTATATTAGTGG  550

seq1  CTATGTATTTTTGTATATAATTGTACACAGGCATGCACACACATACATAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATTTTTGTATATAATTGTACACAGGCATGCACACACATACATAC  600

seq1  ACACACACATACATGCCCACATACACACACACAGTAAGCATCATTACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACATGCCCACATACACACACACAGTAAGCATCATTACACA  650

seq1  CTACTTATCACTTATATGTTACACACTATTGTCATTACTCTTGCATATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATCACTTATATGTTACACACTATTGTCATTACTCTTGCATATCC  700

seq1  CCCAGAACTTGATGGTAAGACTCTGTTACTGAACGTTATCACAAATTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACTTGATGGTAAGACTCTGTTACTGAACGTTATCACAAATTACA  750

seq1  TCTGTAGACATGGAGAAGCCCTGTTACTGAACATCTACAGACATGTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACATGGAGAAGCCCTGTTACTGAACATCTACAGACATGTAGAA  800

seq1  TTC  802
      |||
seq2  TTC  803

seq1: chr1_31331338_31332425
seq2: B6Ng01-038C15.g_70_1138

seq1  GAATTCTCTCCTCTGACTCTGGCACCCAGAGACTGGACTCAGCATACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTGACTCTGGCACCCAGAGACTGGACTCAGCATACTGA  50

seq1  GTTTGCTTCTTCCAATATTTGCAATTTTTTTTCCTTTTTGAAACTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTCTTCCAATATTTGCAATTTTTTTTCCTTTTTGAAACTGGAGT  100

seq1  ATTTGAAACTGTGTTTGAGTAGGAATCATTCTGAGTAGACCAGAATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACTGTGTTTGAGTAGGAATCATTCTGAGTAGACCAGAATGCTA  150

seq1  TTTGACTAGTTCTATCATTCGCAAAATGGAGATTAGTCACAGCTACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGTTCTATCATTCGCAAAATGGAGATTAGTCACAGCTACATAT  200

seq1  ACTGGTTAAATTTAAACCTTTGTGGGTATATACTGATTAAGTTCAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAAATTTAAACCTTTGTGGGTATATACTGATTAAGTTCAAACTT  250

seq1  CTTGATTTTCCTAATCAAGTTTTCAGAAACTCTTCCCTATTGTTTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTCCTAATCAAGTTTTCAGAAACTCTTCCCTATTGTTTAATGA  300

seq1  TGCAATGTGCTGAAATAACAAATGTACTTTCAACAAAAAATAAAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGCTGAAATAACAAATGTACTTTCAACAAAAAATAAAATTTTG  350

seq1  TTTTCAAATCAGGTAAACTTGATCTAAGACCAAAATCCATGCCTGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCAGGTAAACTTGATCTAAGACCAAAATCCATGCCTGCCCAG  400

seq1  GCTGACAAAATGAACATGACTTTGGAAGACATCATTAAGCTGAATAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAAATGAACATGACTTTGGAAGACATCATTAAGCTGAATAAGAT  450

seq1  CCAGCAAAGACGTCACAACAGGCCTGATCCCCGAATGAATCGAGGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGACGTCACAACAGGCCTGATCCCCGAATGAATCGAGGCGCTG  500

seq1  GGCCTAAGAGGTACAGGCCCGCCATCACCCATAGTGGCAGGAACAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGAGGTACAGGCCCGCCATCACCCATAGTGGCAGGAACAGGCTG  550

seq1  GCACCATACCGCAGACCAAAACTTCTTCCAGACAAGTGGCAGCATGACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATACCGCAGACCAAAACTTCTTCCAGACAAGTGGCAGCATGACCG  600

seq1  ATTCGTTGGCTGCTTCAGGGCTGGAAACCACATGGATACTAGTGGGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTGGCTGCTTCAGGGCTGGAAACCACATGGATACTAGTGGGAAGC  650

seq1  TGCTCCTGTCAAACCTGCACTACAGAGTGTCAGATGCTGATATCCGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTCAAACCTGCACTACAGAGTGTCAGATGCTGATATCCGGAAA  700

seq1  CTC-TTTTCTGAATTTGGAACGTTGAGAAAATATGCTGTGCACTATGATG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGAATTTGGAACGTTGAGAAAATATGCTGTGCACTATGATG  750

seq1  GCTCTGGACGAAGTTTAGGGACAGCACATGTGCACTTTGAAAGGAAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGACGAAGTTTAGGGACAGCACATGTGCACTTTGAAAGGAAGGCA  800

seq1  GATGCCCTGAAGGCTATGAGACAGTACAATGGCATCCCTTTGGATGGCCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTGAAGGCTATGAGACAGTACAATGGCATCCCTTTGGATGGCCG  850

seq1  CCCTATGAACATTCAGCTTGTCACCTCACAGACTGATATACAACGAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAACATTCAGCTTGTCACCTCACAGACTGATATACAACGAAGAC  900

seq1  CTGCACAAAACAGAAACAGGGACACCATTACAAGAAACCCTGGCTCTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAAACAGAAACAGGGACACCATTACAAGAAACCCTGGCTCTGGA  950

seq1  GGGTTTAGTGGTGGATGGTGGATTCATCTTTTGATTCTTTTTATTTCATT  999
       |||||||||   ||||||||||||||| |||||||||||    |||| |
seq2  -GGTTTAGTG--TGATGGTGGATTCATC-TTTGATTCTTT---ATTCA-T  992

seq1  TCTTATTTTCTCCTGTTTTAAAACTCATGTAAAACTCTTTCTTTTTCTCT  1049
      |||||||| |      ||| |||||||||  ||||||||||||  ||   
seq2  TCTTATTTCC-----CTTTTAAACTCATG--AAACTCTTTCTTCCTC---  1032

seq1  TTTCTCTCTCTCTCTCTCTCTTTTTTTTCCTTTTAAAAA  1088
      |||||| |||  |||||||||||||||||  ||||||||
seq2  TTTCTCCCTCCTTCTCTCTCTTTTTTTTC--TTTAAAAA  1069