BAC Information

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BAC

Clone NameB6Ng01-038E14
Chromosome1 (Build37)
Map Location 132,339,744 - 132,340,898
singlet/doubletsinglet
Overlap geneCd55
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2
Downstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E14.bB6Ng01-038E14.g
ACCDH865891DH865892
length1,1271,169
definitionDH865891|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E14, 5' end.DH865892|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagccaaggcagtttactattccgtaactttagttccagagaa
tctgataccctcttctggtcctcaggcactaagtacactcagagacaggt
aaacatgccaaaccattaattcatgtaaagccaaagaaaaggaaagagga
agccttcgtatttaaaagctactgctagtttaacaggggaaaaaagatct
atatggcataaaaagaaaactaatctgagttaacattaaaatggtgcttt
aataatagcattaaaaggtagttataataattaattaactgactaaaaca
ggcaggaattaagtcagttttgaagtaactcgggtgtgcacaaactgtct
gatttctgagtagttaaactgccacgatgaaataggatcaatttaaattg
ccgcacttgaccaggggatataagagccaactaggccatttatatttaat
cccattcaaagcacatcagctatttcagataaggcttgacttaacctatg
ctgtctaacgcctgggtgttgacttatgctgagcaccttttgattctctt
gatgggtgacaatctacttgagcctcactcacactccaacaggcagtttg
gtctttttccatcgtaaagataaaagtgaaaagtctctaagccacagcct
gcataaagaaccttctggattcaaaccggaaagatggagttcagaactgc
tcagggtggcttagctcctttcccataccagatgtggaaaactgcttatt
catggacaatttaaagatgttatgagccagctttttctggatatctttgc
ttctctacagcacacagatattaccacaaattaaattcaatagaaaggga
gtaagtcgtcactcatatagcgtgaggaggaactttgactttaatatcgt
tttctttgaataccattactgtccttaaatgtactggcaggaactggtgg
agaggggagagacatcccccagggtagcaattaaaagggaaagaaacagt
attccaaagagtctaaagctagatgtgatttatacatattcatttaccag
aaaaaaggagaactttagatctagtgcagaaactgacagtctggtatcag
tactacatcagcagcctcaagcttgag
gaattctcacctgaggaatatcgaatggcagagaagcacctgaaaaatgt
tcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagca
gatgctggcgtggatgtggagaaagaggaacactcctccattgttgatgg
gattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatc
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
taactcacacaatatgtactcactgataagtggatactagccccaaacct
aggatacccaagatataagatacaatttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatacccagggatccaccccatattca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaaatggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctaggagaagtacccaggagctaaagggatctgcaaccctat
aggtggaacaacattatgaactaatcagtaccccggagctctgactctag
ctgcatttgtatcaaaagaatgcctagtcggccatcactggaaagagagc
cattggacttgcaacttaagtcccagtaagggaacgcaggtcaaaggggg
agtggggtgaatggggacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132339744_132340898
seq2: B6Ng01-038E14.b_46_1172

seq1  GAATTCCCAGCCAAGGCAGTTTACTATT-TGTAACTTTAGTTCCAGAGAA  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCCCAGCCAAGGCAGTTTACTATTCCGTAACTTTAGTTCCAGAGAA  50

seq1  TCTGATACCCTCTTCTGGTCCTCAGGCACTAAGTACACTCAGAGACAGGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACCCTCTTCTGGTCCTCAGGCACTAAGTACACTCAGAGACAGGT  100

seq1  AAACATGCCAAACCATTAATTCATGTAAAGCCAAAGAAAAGGAAAGAGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCAAACCATTAATTCATGTAAAGCCAAAGAAAAGGAAAGAGGA  150

seq1  AGCCTTCGTATTTAAAAGCTACTGCTAGTTTAACAGGGGAAAAAAGATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCGTATTTAAAAGCTACTGCTAGTTTAACAGGGGAAAAAAGATCT  200

seq1  ATATGGCATAAAAAGAAAACTAATCTGAGTTAACATTAAAATGGTGCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCATAAAAAGAAAACTAATCTGAGTTAACATTAAAATGGTGCTTT  250

seq1  AATAATAGCATTAAAAGGTAGTTATAATAATTAATTAACTGACTAAAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGCATTAAAAGGTAGTTATAATAATTAATTAACTGACTAAAACA  300

seq1  GGCAGGAATTAAGTCAGTTTTGAAGTAACTCGGGTGTGCACAAACTGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAATTAAGTCAGTTTTGAAGTAACTCGGGTGTGCACAAACTGTCT  350

seq1  GATTTCTGAGTAGTTAAACTGCCACGATGAAATAGGATCAATTTAAATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTAGTTAAACTGCCACGATGAAATAGGATCAATTTAAATTG  400

seq1  CCGCACTTGACCAGGGGATATAAGAGCCAACTAGGCCATTTATATTTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTTGACCAGGGGATATAAGAGCCAACTAGGCCATTTATATTTAAT  450

seq1  CCCATTCAAAGCACATCAGCTATTTCAGATAAGGCTTGACTTAACCTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAAAGCACATCAGCTATTTCAGATAAGGCTTGACTTAACCTATG  500

seq1  CTGTCTAACGCCTGGGTGTTGACTTATGCTGAGCACCTTTTGATTCTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAACGCCTGGGTGTTGACTTATGCTGAGCACCTTTTGATTCTCTT  550

seq1  GATGGGTGACAATCTACTTGAGCCTCACTCACACTCCAACAGGCAGTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGACAATCTACTTGAGCCTCACTCACACTCCAACAGGCAGTTTG  600

seq1  GTCTTTTTCCATCGTAAAGATAAAAGTGAAAAGTCTCTAAGCCACAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTCCATCGTAAAGATAAAAGTGAAAAGTCTCTAAGCCACAGCCT  650

seq1  GCATAAAGAACCTTCTGGATTCAAACCGGAAAGATGGAGTTCAGAACTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGAACCTTCTGGATTCAAACCGGAAAGATGGAGTTCAGAACTGC  700

seq1  TCAGGGTGGCTTAGCTCCTTTCCCATACCAGATGTGGAAAACTGCTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGCTTAGCTCCTTTCCCATACCAGATGTGGAAAACTGCTTATT  750

seq1  CATGGACAATTTAAAGATGTTATGAGCCAGCTTTTTCTGGATATCTTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAATTTAAAGATGTTATGAGCCAGCTTTTTCTGGATATCTTTGC  800

seq1  TTCTCTACAGCACACAGATATTACCACAAATTAAATTCAATAGAAAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACAGCACACAGATATTACCACAAATTAAATTCAATAGAAAGGGA  850

seq1  GTAAGTCGTCACTCATATAGCGTGAGGAGGAACTTTGACTTTAATATCGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTAAGTCGTCACTCATATAGCGTGAGGAGGAACTTTGACTTTAATATCG-  899

seq1  TTTTCTTTGAAATACCATTACTGTCCTTAAATGTACTGGCAGGAACTGGT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTG-AATACCATTACTGTCCTTAAATGTACTGGCAGGAACTGGT  948

seq1  GGAGAGGGGGAGAGACATCCCCCAGGGTAGCAATTAAAAAGGGAAAGAAA  999
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGA-GGGGAGAGACATCCCCCAGGGTAGCAATT-AAAAGGGAAAGAAA  996

seq1  CAGTATTCCAAAAGAGGTCTAAAGCTAAGAATGTGATTTAAATACAATAT  1049
      ||||||||| ||||| |||||||||||   |||||||||  |||| ||||
seq2  CAGTATTCC-AAAGA-GTCTAAAGCTA--GATGTGATTT--ATAC-ATAT  1039

seq1  TCAAATTTCACAAGAAAAAAAAGGAGAAACTTTTAAGATCATAGTGCCAG  1099
      |||   || || ||  |||||||||| ||||||  ||||| ||||| |||
seq2  TCA---TTTACCAG--AAAAAAGGAG-AACTTT--AGATC-TAGTG-CAG  1079

seq1  AAAACTGACGAGGCCTGGGATACCAGTTACTACATCAGCAGCCTCAAAGC  1149
       ||||||||   | ||||  || ||| ||||||||||||||||||||   
seq2  -AAACTGAC--AGTCTGG--TATCAG-TACTACATCAGCAGCCTCAA--G  1121

seq1  CTTGAG  1155
      ||||||
seq2  CTTGAG  1127