BAC Information

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BAC

Clone NameB6Ng01-038H16
Chromosome1 (Build37)
Map Location 154,688,982 - 154,842,795
singlet/doubletdoublet
Overlap geneSmg7, EG668097, Nmnat2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2
Downstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038H16.bB6Ng01-038H16.g
ACCDH866026DH866027
length7021,113
definitionDH866026|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H16, 5' end.DH866027|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,688,982 - 154,689,683)(154,841,669 - 154,842,795)
sequence
gaattccctaaggacaaattatcctagcaggttttactctctaaaatgtt
aaaacattattgactttaaaaagcctttcaaatccattttgatagctggt
tttgtttttatgttttctaaagcagctgccttcatgatatactaagttga
ttttctatttaattgtcttaaaaaagttactgggggtgggggcaggggag
agaaagctggatataatgcttgctgttaatagataacagtttaataattt
gctgaacacccactacacggaaagcattttcaaatacattacattataaa
ctatgttaagtacaggaaaggatatttaaaaaaatttttaaagcaagcaa
gcaaaaaacaaacaaacaaacaaaacacgtgaaaaggtcccattttttct
atcatggccagttccatgcaaatagacaggagcagaagagtgagtggaca
caaaggcacatctgcagcagcaaccgccccagctgagctgcatggctcct
aggcttcttccctcagggcaggaagcctttactgctaactcgcccaggca
aactcaagtactaggagtggcagctattttttctgactctatggttaatg
gattattgctctatatttacaggaaagaaaaagctagaaataaaaactca
aaaatctttttaagttgctttaagatgtgtgtgtgtgtggagtgggagag
gt
gaattcagaggacagttctacaggggagggagggaagaccaagaagagaa
cagctgagccagcagagacccaggggaaagtaagggagaccaagaaccag
tcttggccttgagtgacaaatggcgatctgtcatctgcatggggccacct
gtgcagaacagaagatggagtcccaggtcctagctattcctcaaaataaa
atagattctcatttgcatgaaattaatgttcagacccactgaagaactgc
atcctttattgtctgctacttctgcaagcaagcgagcgagcaaacaaaca
aaatgcctgtttcattggtaaatcctttccaagaggctttggcaaatcaa
aatccaaaagtgggcctggagagtcaccaaactgagcagctgagcttaga
aagctgttgttacagaggaaatagactttgcctcactaaaaagaacctgg
ccctggagtcatgtgcatagttcagcctggaagctgaaattggcagaggg
atgaatatggaagtttaatacccaaagcctataggtggggggcactctcc
atgtagtccctctgaaccaaaaggcctgggtgtctttcattcttgtattc
cacacgagaaggaccagctcccccagggagccatgaagtcaggcctcaat
gttcctttccactcttgagcaggaagattcaaccagcatcttgctaccta
gttgtatgtcaacttgacacaagctaaagtcatctgagaggagggaacct
caattgaaaaaaagcctctgtaagatagggctgtaagcaagcctgtatga
agcatgtttctaatttgtgattgatggttcggaatagtccaccttcattg
tgggtccatccctgggctggtggtcctgggtcctgtaagaaagcaggctg
agcagtcatgaggagtaagccagtagcagcatccttccatctctgcatca
gctctcatctcagatctggctcagtttgagtctggtcttggcttctcctc
atgggctgtgatcaggatagtatgcaataagccctttcctcctagtccct
cggtcgtggtgttatccagcaacgaaaccatactaagacagcacataccc
agaagcgctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154688982_154689683
seq2: B6Ng01-038H16.b_45_746

seq1  GAATTCCCTAAGGACAAATTATCCTAGCAGGTTTTACTCTCTAAAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGGACAAATTATCCTAGCAGGTTTTACTCTCTAAAATGTT  50

seq1  AAAACATTATTGACTTTAAAAAGCCTTTCAAATCCATTTTGATAGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTATTGACTTTAAAAAGCCTTTCAAATCCATTTTGATAGCTGGT  100

seq1  TTTGTTTTTATGTTTTCTAAAGCAGCTGCCTTCATGATATACTAAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTATGTTTTCTAAAGCAGCTGCCTTCATGATATACTAAGTTGA  150

seq1  TTTTCTATTTAATTGTCTTAAAAAAGTTACTGGGGGTGGGGGCAGGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTTAATTGTCTTAAAAAAGTTACTGGGGGTGGGGGCAGGGGAG  200

seq1  AGAAAGCTGGATATAATGCTTGCTGTTAATAGATAACAGTTTAATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGGATATAATGCTTGCTGTTAATAGATAACAGTTTAATAATTT  250

seq1  GCTGAACACCCACTACACGGAAAGCATTTTCAAATACATTACATTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACACCCACTACACGGAAAGCATTTTCAAATACATTACATTATAAA  300

seq1  CTATGTTAAGTACAGGAAAGGATATTTAAAAAAATTTTTAAAGCAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAAGTACAGGAAAGGATATTTAAAAAAATTTTTAAAGCAAGCAA  350

seq1  GCAAAAAACAAACAAACAAACAAAACACGTGAAAAGGTCCCATTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAACAAACAAACAAACAAAACACGTGAAAAGGTCCCATTTTTTCT  400

seq1  ATCATGGCCAGTTCCATGCAAATAGACAGGAGCAGAAGAGTGAGTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCCAGTTCCATGCAAATAGACAGGAGCAGAAGAGTGAGTGGACA  450

seq1  CAAAGGCACATCTGCAGCAGCAACCGCCCCAGCTGAGCTGCATGGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCACATCTGCAGCAGCAACCGCCCCAGCTGAGCTGCATGGCTCCT  500

seq1  AGGCTTCTTCCCTCAGGGCAGGAAGCCTTTACTGCTAACTCGCCCAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTCCCTCAGGGCAGGAAGCCTTTACTGCTAACTCGCCCAGGCA  550

seq1  AACTCAAGTACTAGGAGTGGCAGCTATTTTTTCTGACTCTATGGTTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGTACTAGGAGTGGCAGCTATTTTTTCTGACTCTATGGTTAATG  600

seq1  GATTATTGCTCTATATTTACAGGAAAGAAAAAGCTAGAAATAAAAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGCTCTATATTTACAGGAAAGAAAAAGCTAGAAATAAAAACTCA  650

seq1  AAAATCTTTTTAAGTTGCTTTAAGATGTGTGTGTGTGTGGAGTGGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTTAAGTTGCTTTAAGATGTGTGTGTGTGTGGAGTGGGAGAG  700

seq1  GT  702
      ||
seq2  GT  702

seq1: chr1_154841669_154842795
seq2: B6Ng01-038H16.g_69_1181 (reverse)

seq1  TTCCAGGCATTCTGGGTTAATG-GCTGTCTTAGTTATGGTTTCTGTTGCT  49
      ||||||   ||||||||  ||| |||||||||| ||||||||| ||||||
seq2  TTCCAGCGCTTCTGGGT--ATGTGCTGTCTTAG-TATGGTTTC-GTTGCT  46

seq1  GTGATGAAACACCACGACCGGAGTGACTTGGGAGGAAAGGGCTTATATGC  99
      | |||  |||||||||||| ||| ||| | |||||||||||||||| || 
seq2  G-GAT--AACACCACGACC-GAGGGAC-TAGGAGGAAAGGGCTTAT-TG-  89

seq1  CTTACTATCCTGAGTCACAGCCCATTGAGAGAAGCCAAGACCAGAACTCA  149
      | ||||||||||| |||||||||||   |||||||||||||||| |||||
seq2  CATACTATCCTGA-TCACAGCCCATGAGGAGAAGCCAAGACCAG-ACTCA  137

seq1  AACTGAGCCAGAATCTGGAGATGAGAGCTGATGCAGAGATGGAGGGATGC  199
      ||||||||||| |||| |||||||||||||||||||||||||| ||||||
seq2  AACTGAGCCAG-ATCT-GAGATGAGAGCTGATGCAGAGATGGAAGGATGC  185

seq1  TGCCTACTGGCTTACTCCTCATGACTTGCTCAGCCTGCTTTCTTACAGGA  249
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TG-CTACTGGCTTACTCCTCATGAC-TGCTCAGCCTGCTTTCTTACAGGA  233

seq1  CCCAGGACCACCAGCCCAGGGATGGACCCACAATG-AGGTGGACTATTCC  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCAGGACCACCAGCCCAGGGATGGACCCACAATGAAGGTGGACTATTCC  283

seq1  GAACCATCAATCACAAATTAG-AACATGCTTCATACAGGCTTGCTTACAG  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAACCATCAATCACAAATTAGAAACATGCTTCATACAGGCTTGCTTACAG  333

seq1  CCCTATCTTACAGAGGCTTTTTTTCAATTGAGGTTCCCTCCTCTCAGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTTACAGAGGCTTTTTTTCAATTGAGGTTCCCTCCTCTCAGATG  383

seq1  ACTTTAGCTTGTGTCAAGTTGACATACAACTAGGTAGCAAGATGCTGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTTGTGTCAAGTTGACATACAACTAGGTAGCAAGATGCTGGTT  433

seq1  GAATCTTCCTGCTCAAGAGTGGAAAGGAACATTGAGGCCTGACTTCATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCCTGCTCAAGAGTGGAAAGGAACATTGAGGCCTGACTTCATGG  483

seq1  CTCCCTGGGGGAGCTGGTCCTTCTCGTGTGGAATACAAGAATGAAAGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGGGAGCTGGTCCTTCTCGTGTGGAATACAAGAATGAAAGACA  533

seq1  CCCAGGCCTTTTGGTTCAGAGGGACTACATGGAGAGTGCCCCCCACCTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCTTTTGGTTCAGAGGGACTACATGGAGAGTGCCCCCCACCTAT  583

seq1  AGGCTTTGGGTATTAAACTTCCATATTCATCCCTCTGCCAATTTCAGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGGTATTAAACTTCCATATTCATCCCTCTGCCAATTTCAGCTT  633

seq1  CCAGGCTGAACTATGCACATGACTCCAGGGCCAGGTTCTTTTTAGTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGAACTATGCACATGACTCCAGGGCCAGGTTCTTTTTAGTGAGG  683

seq1  CAAAGTCTATTTCCTCTGTAACAACAGCTTTCTAAGCTCAGCTGCTCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTATTTCCTCTGTAACAACAGCTTTCTAAGCTCAGCTGCTCAGT  733

seq1  TTGGTGACTCTCCAGGCCCACTTTTGGATTTTGATTTGCCAAAGCCTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACTCTCCAGGCCCACTTTTGGATTTTGATTTGCCAAAGCCTCTT  783

seq1  GGAAAGGATTTACCAATGAAACAGGCATTTTGTTTGTTTGCTCGCTCGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTTACCAATGAAACAGGCATTTTGTTTGTTTGCTCGCTCGCT  833

seq1  TGCTTGCAGAAGTAGCAGACAATAAAGGATGCAGTTCTTCAGTGGGTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAGAAGTAGCAGACAATAAAGGATGCAGTTCTTCAGTGGGTCTG  883

seq1  AACATTAATTTCATGCAAATGAGAATCTATTTTATTTTGAGGAATAGCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAATTTCATGCAAATGAGAATCTATTTTATTTTGAGGAATAGCTA  933

seq1  GGACCTGGGACTCCATCTTCTGTTCTGCACAGGTGGCCCCATGCAGATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGACTCCATCTTCTGTTCTGCACAGGTGGCCCCATGCAGATGA  983

seq1  CAGATCGCCATTTGTCACTCAAGGCCAAGACTGGTTCTTGGTCTCCCTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCGCCATTTGTCACTCAAGGCCAAGACTGGTTCTTGGTCTCCCTTA  1033

seq1  CTTTCCCCTGGGTCTCTGCTGGCTCAGCTGTTCTCTTCTTGGTCTTCCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTGGGTCTCTGCTGGCTCAGCTGTTCTCTTCTTGGTCTTCCCT  1083

seq1  CCCTCCCCTGTAGAACTGTCCTCTGAATTC  1127
      ||||||||||||||||||||||||||||||
seq2  CCCTCCCCTGTAGAACTGTCCTCTGAATTC  1113