BAC Information

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BAC

Clone NameB6Ng01-038M03
Chromosome1 (Build37)
Map Location 50,378,971 - 50,380,048
singlet/doubletsinglet
Overlap genenone
Upstream geneC230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2, Sdpr, LOC383504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M03.bB6Ng01-038M03.g
ACCDH866223DH866224
length1,2001,053
definitionDH866223|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M03, 5' end.DH866224|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccgta
aaacagactgttgagaaggattcagctgcgtgaattcagaactcttcagc
tggggaatggtggtaatgaagtgttcccgtaaaacagactgttgggaagg
attcggctgcgtgaattcggaactcttcagctggggaacagggtacccgt
aagtatagctttgcaaggtaagtctggtcttgggctttctaacgaaattc
aagacagtctatcagaagtaaagtgggaaatggctttacaaggtgagtct
ggtcttgagctttctgacaaaattcaagacagtctatcagaagtaaagtg
ggaaatagctttacaaggtatgtttggccttgaactttctctagtgttag
gagcctttttgttccttttcacatgttatcaagcggttaaggcagggctg
aaaattctggatgaaattcagggcaatctatcagaagtaaagcggggaga
gagagtaggagcaaagaggaaatatggtacacaaaataagtatacaggcc
tttccacgggtcttgaacctgaggaaaagtttaggtcaggtaagaatacc
tggggagagattagaaggaaggaaaagaaaaaagatcaattagcggaggt
ctctaggagaaggagcctatactcatcactaggtgagctcaaggagccag
ttcttaatagttctgaatcagatgaaaaggctattagggcctggaaggcg
ctctcccgagcaggtgaagccactggacaactaacaaagatcgtccagag
acctcaggagtcattctcagattttgtggccagaatgacagaggcagcag
agcgtatttttggagattcagagcaagccgcacctctggtagaatagctt
atttatgagcaagccacgcatgaatgcagagcggccatagccccagaaag
aacaaaggtttacaagactggctcaggtttgtctggagcttggcgacctc
tcaccaatgcaggcttagcggccgcatcctccaatcccaaatctccatgg
gcagaaattaatcacgcatagatcttgtcaggacactgatgtattttgca
tagcctagctgggatgaacagttccggtttgtggttactcattcgatgaa
aattactaggcagctattgtccaaggcttcctcagattagtttcgaaatt

gaattcttgtgcttataattcttttggtgctcctggagatagtagagtaa
aaagaatacttcactagaaatgaaatctttgttgaacaccagtgctccct
atattcacatgactaggtacttttagattaactgcaactttcataatata
gacattgccactattgatggtgcttagatatcaataatttttatttgaaa
ttttactttatttttgtcatgtgtttctaggatcaatgacacctgttttg
gattcatttttgtttgtttgcttgttttgtttttttagtgaagaattttt
ctttcttatcttttctctattttctgtctatttttaggtctttcctatat
tttatttaataatacttaaagatttttttacatgcatacactatgtatca
atcaaatatacttcaaatttactctattctaattcccacccccattgcac
catcaatttctattcccaacattatgtgttttcatttttttgcattctag
gttcattatgtgcagtcggtatgtgtagagatggaaaacgctttatatgt
tgtattacaagtgctacatacatgcggtctatcgttgataactcctcagc
aatggtaggtcttcctaacaatctcatcttcatgctgggactttatgcag
tttcagcttctgcaggttttctgagtctgtcagaactataaggtaaaatg
taaaactgccgggtaatgatttcaaaatagtctctttatagttctctacc
acctctgctactcacagttttccatcctctcttctttatgatccagaggc
ttaagaggacaaagtgtgatgtagttgccagatttgtgaaaagaactact
tatagatcagtgtacagtcaattctttccaagaagcttcttttgcaacag
atggcacctacagaaagaccgacagctgacaaggtaaagatgagagctgt
aaatccttggcctaaattgacatctatatccacatgcttccacccatccc
ttaggattatgcgagagggaagagcagtttaaaaatccactacaaggatg
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50378971_50380048
seq2: B6Ng01-038M03.g_72_1124 (reverse)

seq1  ATTCATCCATTGTATGTGGATCTTTTAAACTGACTCTCTCCTCTTCTGCC  50
      |||||||| ||||| |||||| ||||||||||   |||| | | |||  |
seq2  ATTCATCC-TTGTA-GTGGAT-TTTTAAACTG---CTCTTC-CCTCTCGC  43

seq1  ATAATCCTTAAGGATTGGGTTGAAAGCATGTGTGATATAGATGTCATATT  100
      |||||||| | ||||  || || ||||||||| ||||||||||||| |||
seq2  ATAATCCTAAGGGAT--GGGTGGAAGCATGTG-GATATAGATGTCA-ATT  89

seq1  TATGGCCAAGGATTCTACAGCCTCTCATTCTTTACACTTGGTCAGCTGTC  150
      || ||||||||||| ||||| |||||| ||||||| ||| ||||||||||
seq2  TA-GGCCAAGGATT-TACAG-CTCTCA-TCTTTAC-CTT-GTCAGCTGTC  133

seq1  GGTCTTTCTGTTAGTTGCCATCTGTTGCAAAATGAAGCTTCTTTGGAAAG  200
      |||||||||| ||| ||||||||||||||||| |||||||| ||||||||
seq2  GGTCTTTCTG-TAGGTGCCATCTGTTGCAAAA-GAAGCTTC-TTGGAAAG  180

seq1  AATTGACTGTTACACTGATCTATTATGTAGTTCTTTTTCACAAATCTGGC  250
      ||||||||| |||||||||||| || ||||||| ||||||||||||||||
seq2  AATTGACTG-TACACTGATCTA-TAAGTAGTTC-TTTTCACAAATCTGGC  227

seq1  AACTACATCACACTTTGTCCTCCTAAGCCTCTGGATTCATTAAAGAAGAG  300
      |||||||||||||||||||||| |||||||||||| ||| ||||||||||
seq2  AACTACATCACACTTTGTCCTCTTAAGCCTCTGGA-TCA-TAAAGAAGAG  275

seq1  AGGATGGAAAACTGTGAGTAGCAGAGGTGGTAGAGAACTATAAAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAAAACTGTGAGTAGCAGAGGTGGTAGAGAACTATAAAGAGACT  325

seq1  ATTTTGAAATCATTACCCGGCAGTTTTACATTTTACCTTATAGTTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAATCATTACCCGGCAGTTTTACATTTTACCTTATAGTTCTGAC  375

seq1  AGACTCAGAAAACCTGCAGAAGCTGAAACTGCATAAAGTCCCAGCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGAAAACCTGCAGAAGCTGAAACTGCATAAAGTCCCAGCATGAA  425

seq1  GATGAGATTGTTAGGAAGACCTACCATTGCTGAGGAGTTATCAACGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTGTTAGGAAGACCTACCATTGCTGAGGAGTTATCAACGATAG  475

seq1  ACCGCATGTATGTAGCACTTGTAATACAACATATAAAGCGTTTTCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATGTATGTAGCACTTGTAATACAACATATAAAGCGTTTTCCATCT  525

seq1  CTACACATACCGACTGCACATAATGAACCTAGAATGCAAAAAAATGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATACCGACTGCACATAATGAACCTAGAATGCAAAAAAATGAAAA  575

seq1  CACATAATGTTGGGAATAGAAATTGATGGTGCAATGGGGGTGGGAATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATGTTGGGAATAGAAATTGATGGTGCAATGGGGGTGGGAATTAG  625

seq1  AATAGAGTAAATTTGAAGTATATTTGATTGATACATAGTGTATGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTAAATTTGAAGTATATTTGATTGATACATAGTGTATGCATGTA  675

seq1  AAAAAATCTTTAAGTATTATTAAATAAAATATAGGAAAGACCTAAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTTAAGTATTATTAAATAAAATATAGGAAAGACCTAAAAATA  725

seq1  GACAGAAAATAGAGAAAAGATAAGAAAGAAAAATTCTTCACTAAAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAATAGAGAAAAGATAAGAAAGAAAAATTCTTCACTAAAAAAAC  775

seq1  AAAACAAGCAAACAAACAAAAATGAATCCAAAACAGGTGTCATTGATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCAAACAAACAAAAATGAATCCAAAACAGGTGTCATTGATCCT  825

seq1  AGAAACACATGACAAAAATAAAGTAAAATTTCAAATAAAAATTATTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACATGACAAAAATAAAGTAAAATTTCAAATAAAAATTATTGATA  875

seq1  TCTAAGCACCATCAATAGTGGCAATGTCTATATTATGAAAGTTGCAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCACCATCAATAGTGGCAATGTCTATATTATGAAAGTTGCAGTTA  925

seq1  ATCTAAAAGTACCTAGTCATGTGAATATAGGGAGCACTGGTGTTCAACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAGTACCTAGTCATGTGAATATAGGGAGCACTGGTGTTCAACAA  975

seq1  AGATTTCATTTCTAGTGAAGTATTCTTTTTACTCTACTATCTCCAGGAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTTCTAGTGAAGTATTCTTTTTACTCTACTATCTCCAGGAGC  1025

seq1  ACCAAAAGAATTATAAGCACAAGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  ACCAAAAGAATTATAAGCACAAGAATTC  1053