BAC Information

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BAC

Clone NameB6Ng01-038M20
Chromosome17 (Build37)1 (Build37)
Map Location 54,474,357 - 54,475,5435,556,532 - 5,557,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7
Downstream geneLOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M20.bB6Ng01-038M20.g
ACCDH866255DH866256
length1,171984
definitionDH866255|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M20, 5' end.DH866256|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,474,357 - 54,475,543)(5,556,532 - 5,557,138)
sequence
gaattcactagcattccttttttttggaaaatactatttgccatattttg
cacttttaagacctccctaaagattcaatgaggcaagtttcagattggga
taaaacttttgctagctatacatttgacagaggattagtaactagattac
acaaagaactgagtaaactaaatattaagaaaagaacgctgtaagaaaga
gggccaaggaacttgaaagaaattctgctctcaccaaaacaaaatgaaac
acaaatggctaataaaaatatattgtcctcagcatcattttgatccaaga
aaatgcaaattaaaagtattttacgattccatctcactccagttagaatg
ggtgtcattaagaaatcaaactaaactggggctaaagagacagctcagtg
ttggagagctcttgctgctttggtgaatgttggagttaattttcagcatg
cacagcaggtagctcacacccacctgaaactccagctctagtgtatcttt
tttggcttcttacctctaaggactcacacacacacacacacacacacaca
cacacacacacacacactaacacacacacatatacacacacatacttgtg
tgcatatacacaaaaataaaaatttaaaaagaaattaaatgtctttctag
cacattctggggagcggggaggagagaagatgcttgagatatatttatta
atgagagactatatgaaagaaaaaatctattttcaataaaagacatttcc
attaaaatataaagaaattaaatgtcaaaaaatgataaaaacaaaccaac
caaacaaaggaacaaacaaaaagagaacttattatctgtttgtggaagta
taaacttctgcagccactgttgactaatgctgatagttattcaaaaatga
gaactagagctaccataagacccacatgtactgctctctaagcatatacc
aaagacttggcatctactcagttcactgctcttctatttactacagcagg
ataaggaattagcctggattccatcatccaatagagaatggaatgtggtt
catatttgtctccaatccaggaaattcttaaaaatataaccaataaagta
aagaacctaaggttaaaaaaaaaagcatatccatattgttttgtgaaaat
gaagttgatgagatatttttt
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccgta
aaacagactgttgagaaggattcaactgcgtaaattcagaactcttcagc
tggggaacggtggtaataaagtgttcccgcaacacagactgttgagaagg
attcaactgcgtgaattcagaactcttcagctggggaatgatggtaatga
agtgttcccacaacacagactgttgagaaggattcaactgcgtgaattca
gaactcttcagctggggaacagggtacccgtaagtatagctttacaaggt
aagtctggtcttgaactttctaacgaaattcaagacagtctatcagaagt
aaagtgggaaatagctttacaaggtaagtctggccttgaactttctaacg
aaattcaagacagtctatcagaagtaaagtgggaaatagctttacaaggt
atgtttggccttgaactttctctagtgttaggagcctttttgttcctttt
cacatgttatcaagtggttaaggcagggctgaaaattctggatgaaattc
agggcaatctatcagaagtaaagcggggagagagagtaggagcaaagagg
aaacatggcgcacaaaataagtatacaggcctttccacgggtcttgaacc
tgaggaaaagtttaggtcaggtaagaatacctggggagagattagaagga
aagaaaagaaaaaagatcaattagcggaggtctctaggagaaggagccta
tactcatcactagatgagctcaaggagccagttcttaatagttctgaatc
agatgaaaaggctattagggcctggaaagcgctctcccgagcagtgaagc
cactggacaactaacaaagatcatccagagacctcagagtcattctcaga
ttttgtggccagaatgacagagcagcagagagtatttttggagattcaga
gcagccgcatctctggtggaatagcttatttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54474357_54475543
seq2: B6Ng01-038M20.b_43_1213

seq1  GAATTCACTAGCATTCCTTTTTTTTGGAAAATACTATTTGCCATATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCATTCCTTTTTTTTGGAAAATACTATTTGCCATATTTTG  50

seq1  CACTTTTAAGACCTCCCTAAAGATTCAATGAGGCAAGTTTCAGATTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAAGACCTCCCTAAAGATTCAATGAGGCAAGTTTCAGATTGGGA  100

seq1  TAAAACTTTTGCTAGCTATACATTTGACAGAGGATTAGTAACTAGATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTTGCTAGCTATACATTTGACAGAGGATTAGTAACTAGATTAC  150

seq1  ACAAAGAACTGAGTAAACTAAATATTAAGAAAAGAACGCTGTAAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACTGAGTAAACTAAATATTAAGAAAAGAACGCTGTAAGAAAGA  200

seq1  GGGCCAAGGAACTTGAAAGAAATTCTGCTCTCACCAAAACAAAATGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGGAACTTGAAAGAAATTCTGCTCTCACCAAAACAAAATGAAAC  250

seq1  ACAAATGGCTAATAAAAATATATTGTCCTCAGCATCATTTTGATCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCTAATAAAAATATATTGTCCTCAGCATCATTTTGATCCAAGA  300

seq1  AAATGCAAATTAAAAGTATTTTACGATTCCATCTCACTCCAGTTAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATTAAAAGTATTTTACGATTCCATCTCACTCCAGTTAGAATG  350

seq1  GGTGTCATTAAGAAATCAAACTAAACTGGGGCTAAAGAGACAGCTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATTAAGAAATCAAACTAAACTGGGGCTAAAGAGACAGCTCAGTG  400

seq1  TTGGAGAGCTCTTGCTGCTTTGGTGAATGTTGGAGTTAATTTTCAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGCTCTTGCTGCTTTGGTGAATGTTGGAGTTAATTTTCAGCATG  450

seq1  CACAGCAGGTAGCTCACACCCACCTGAAACTCCAGCTCTAGTGTATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGTAGCTCACACCCACCTGAAACTCCAGCTCTAGTGTATCTTT  500

seq1  TTTGGCTTCTTACCTCTAAGGACTCACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCTTACCTCTAAGGACTCACACACACACACACACACACACACA  550

seq1  CACACACACACACACACTAACACACACACATATACACACACATACTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTAACACACACACATATACACACACATACTTGTG  600

seq1  TGCATATACACAAAAATAAAAATTTAAAAAGAAATTAAATGTCTTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATACACAAAAATAAAAATTTAAAAAGAAATTAAATGTCTTTCTAG  650

seq1  CACATTCTGGGGAGCGGGGAGGAGAGAAGATGCTTGAGATATATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGGGGAGCGGGGAGGAGAGAAGATGCTTGAGATATATTTATTA  700

seq1  ATGAGAGACTATATGAAAG-AAAAATCTATTTTCAATAAAAGACATTTCC  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAGAGACTATATGAAAGAAAAAATCTATTTTCAATAAAAGACATTTCC  750

seq1  ATTAAAATATAAAGAAATTAAATGTCAAAAAATGATAAAAACAAAACCAA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTAAAATATAAAGAAATTAAATGTCAAAAAATGATAAAAAC-AAACCAA  799

seq1  CCAAACAAAGGAACAAACAAAAAGAGAACTTATTATCTGTTTGTGGAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAGGAACAAACAAAAAGAGAACTTATTATCTGTTTGTGGAAGT  849

seq1  ATAAACTTCTGCAGCCACTGTTGAACTAATGCTGATAGTTATTCAAAAAA  899
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  ATAAACTTCTGCAGCCACTGTTG-ACTAATGCTGATAGTTATTC-AAAAA  897

seq1  TGAGAACTAGAGCTACCATAAGACCCACATGTACTGCTC-CTAAGCATAT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGAACTAGAGCTACCATAAGACCCACATGTACTGCTCTCTAAGCATAT  947

seq1  ACCAAAAGACTTGGCATCCTACTACAGTTCACTGCTCTTCTATTTACTAC  998
      ||| ||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ACC-AAAGACTTGGCAT-CTACT-CAGTTCACTGCTCTTCTATTTACTAC  994

seq1  AGCCAGGATAAGGAATTAGCCTGGATTCCATCATCCAATAGAGAATGGAA  1048
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AG-CAGGATAAGGAATTAGCCTGGATTCCATCATCCAATAGAGAATGG-A  1042

seq1  ATGTGGTTCATATTGGTCTCAAATCCAGGAAAATGTCTAAAATATAAACA  1098
      |||||||||||||| ||||| ||||||||||| | |  ||||||||| ||
seq2  ATGTGGTTCATATTTGTCTCCAATCCAGGAAATTCTTAAAAATATAACCA  1092

seq1  AAAAAGTAAAAGAAACTTAGGGATTAAAAAAAAAAAGCA-ATCCAAAATA  1147
      | ||||| |||||| || |||   | ||||||||||||| ||||   |||
seq2  ATAAAGT-AAAGAACCTAAGG---TTAAAAAAAAAAGCATATCC---ATA  1135

seq1  TGTTTTTGTTGAAAAGAGAGTTTGAAGTGAGATATTTTTT  1187
      |  ||||| ||||||  ||  ||||  |||||||||||||
seq2  TTGTTTTG-TGAAAA-TGAAGTTGA--TGAGATATTTTTT  1171

seq1: chr1_5556532_5557138
seq2: B6Ng01-038M20.g_68_674 (reverse)

seq1  CATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGA  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGA  50

seq1  TTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCTTAACCACTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCTTAACCACTTGATA  100

seq1  ACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGAGAAAGTTCAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGAGAAAGTTCAAGGC  150

seq1  CAAACATACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCT  200

seq1  TGAATTTCGTTAGAAAGTTCAAGGCCAGACGTACCTTGTAAAGCTATTCC  250
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TGAATTTCGTTAGAAAGTTCAAGGCCAGACTTACCTTGTAAAGCTATTTC  250

seq1  CCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTACTTCTGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGAC  300

seq1  CAGACTTACCTTGTAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTACCTTGTAAAGCTATACTTACGGGTACCCTGTTCCCCAGCTGA  350

seq1  AGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTGTTGTGG  400

seq1  GAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCA  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAACACTTCATTACCATCATTCCCCAGCTGAAGAGTTCTGAATTCACGCA  450

seq1  GTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCACCG  500
      |||||||||||||||||||||||| || ||||||||||| ||||||||||
seq2  GTTGAATCCTTCTCAACAGTCTGTGTTGCGGGAACACTTTATTACCACCG  500

seq1  TTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAG  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCCCAGCTGAAGAGTTCTGAATTTACGCAGTTGAATCCTTCTCAACAG  550

seq1  TCTGTTTTACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTACGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTC  600

seq1  TGAATTC  607
      |||||||
seq2  TGAATTC  607