BAC Information

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BAC

Clone NameB6Ng01-038N04
Chromosome1 (Build37)
Map Location 57,335,011 - 57,498,005
singlet/doubletdoublet
Overlap geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream geneLOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038N04.bB6Ng01-038N04.g
ACCDH866271DH866272
length1,0231,070
definitionDH866271|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N04, 5' end.DH866272|Mus musculus domesticus DNA, BAC clone: B6Ng01-038N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,335,011 - 57,335,656)(57,496,931 - 57,498,005)
sequence
gaattccacttgtgatttcttcctactgttttctgagttactacagtcca
tggcatcaagtttttgcctatgcatagacaagcattttcctctagtatct
ccagtttcagatcttatgttaagatctttcatccactttgcaaaagcatt
ttaaattatttatttatttatttcccaaatgttgtcccccttcttgtaga
gctcttcatcctgtcccctctccccttcccctcggaaagcaacacacaca
cacacacacacacacacacacacacacacacacacatgctggcatatcgc
ttctctaggacatcaagtcttgacaggaatagactcatcctatctcactg
gggccagacaaggcagccagccctcagctacatatgtgctgggggccatg
gatcagcccatgtgtgctctttggttagtagcttagtatctggaagctcc
tggttgacactgttggtcttcctatggggttgccactcccttcagctcct
tcaatccttccccttattcttccatgacctcactccccaacctcagtcca
atgtttggctatggatatctcaatctgtctcagttggctgctggtagagc
ctctcagaggacagccatgctaagctcctgtttgcaagcacaacatagca
ctagtagtagtgtcagggtttggtgcccacccatgtgatgaattggtcac
tggtcagccatttcttcagtctcagctccatttttgtccctgcatttctt
ttagacaggaataattctgtgtcaaaacttttgaaggtgggttggtatcc
tcatccttccactgggactgtctatctactggaggtggtctcttcaggtt
ccatctccccactttgggaacttcagctaagatcatccatattgagtcct
gggaacttcttatatctcagtctctgggactttctacaaattcctcccac
tctacactcccacctccggcagctgcatagtacattcattctcctgactt
cttacacccccccatatctgatc
gaattcttggcatcttaatttctcagaagtgctctggttttaatttgcct
gccctgtaaattcttggtctcattcacatcttgactcatgcagctgttct
cggcttcctgctccaacatctggagacaagtcattccctcttctgctggc
accagacacaactgaccaggcacttgaggataaaactcggttttcttgac
gtgttagagcactgccagggatggaaaggaggcagccagagggcagggtg
ttcacacaacactaggaaatcacacacgttttctcaatattcagcatttc
tgtcctttcaagcccttcagcccatgccagcaggctgtcactgtgatttc
tcatgggagagacttcccagcccctctcctctccatagctcttcctctct
tccctttcatggaacagattcccgttctcttcctgtcctttcagaccaga
gatgtgatgggagatataaagaaacatttacatctcaaacaacagaaagc
aatctattcctaagtatctcagagccttagacacagagctgatttgatct
gatgtggttttgtttgtttggttggtctttgcttgtttcttttttgtttt
ttttttgtttgtttgtttgtttgtttgtttgagacaaggcttcacttgtg
tagtcctggctgtcccccaactcagagatctgcctgtgtctgcctctgcc
tctctagtgctgaaaataaaactgtgccatcattgccctgctatgtggtt
ttaaagaacatatcctctgtgaaccattcaaaggaaggatattattgctc
ttgcaccaatgacttttggtagttttttccaaagaatactatgggatggg
ctatgctctggtggaccccactgttagtctgagcaaaacttctttttcct
gggtctgtcagcttcttgagcacattctttattctaaatgtagcttgact
tggctgaccatgtaagaaccctgtagaggcaactagagaaaaccttaaag
tcagtttcacatgttcaagtatgtgagagcaagaggaagaagatttcatt
tgggtactaaagtattgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_57335011_57335656
seq2: B6Ng01-038N04.b_44_689

seq1  GAATTCCACTTGTGATTTCTTCCTACTGTTTTCTGAGTTACTACAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGTGATTTCTTCCTACTGTTTTCTGAGTTACTACAGTCCA  50

seq1  TGGCATCAAGTTTTTGCCTATGCATAGACAAGCATTTTCCTCTAGTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCAAGTTTTTGCCTATGCATAGACAAGCATTTTCCTCTAGTATCT  100

seq1  CCAGTTTCAGATCTTATGTTAAGATCTTTCATCCACTTTGCAAAAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCAGATCTTATGTTAAGATCTTTCATCCACTTTGCAAAAGCATT  150

seq1  TTAAATTATTTATTTATTTATTTCCCAAATGTTGTCCCCCTTCTTGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTTATTTATTTATTTCCCAAATGTTGTCCCCCTTCTTGTAGA  200

seq1  GCTCTTCATCCTGTCCCCTCTCCCCTTCCCCTCGGAAAGCAACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCATCCTGTCCCCTCTCCCCTTCCCCTCGGAAAGCAACACACACA  250

seq1  CACACACACACACACACACACACACACACACACACATGCTGGCATATCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACATGCTGGCATATCGC  300

seq1  TTCTCTAGGACATCAAGTCTTGACAGGAATAGACTCATCCTATCTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGGACATCAAGTCTTGACAGGAATAGACTCATCCTATCTCACTG  350

seq1  GGGCCAGACAAGGCAGCCAGCCCTCAGCTACATATGTGCTGGGGGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGACAAGGCAGCCAGCCCTCAGCTACATATGTGCTGGGGGCCATG  400

seq1  GATCAGCCCATGTGTGCTCTTTGGTTAGTAGCTTAGTATCTGGAAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCCCATGTGTGCTCTTTGGTTAGTAGCTTAGTATCTGGAAGCTCC  450

seq1  TGGTTGACACTGTTGGTCTTCCTATGGGGTTGCCACTCCCTTCAGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACACTGTTGGTCTTCCTATGGGGTTGCCACTCCCTTCAGCTCCT  500

seq1  TCAATCCTTCCCCTTATTCTTCCATGACCTCACTCCCCAACCTCAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTTCCCCTTATTCTTCCATGACCTCACTCCCCAACCTCAGTCCA  550

seq1  ATGTTTGGCTATGGATATCTCAATCTGTCTCAGTTGGCTGCTGGTAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGCTATGGATATCTCAATCTGTCTCAGTTGGCTGCTGGTAGAGC  600

seq1  CTCTCAGAGGACAGCCATGCTAAGCTCCTGTTTGCAAGCACAACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAGGACAGCCATGCTAAGCTCCTGTTTGCAAGCACAACAT  646

seq1: chr1_57496931_57498005
seq2: B6Ng01-038N04.g_66_1135 (reverse)

seq1  TGAC-ATAC-TTAGTACCCAAATGGAAATCTTCTTCCTCTTTGCTCTCAC  48
      |||| |||| ||||||||||||| ||||||||||||||| ||||||||||
seq2  TGACAATACTTTAGTACCCAAAT-GAAATCTTCTTCCTC-TTGCTCTCAC  48

seq1  TATACTTGGAACATGTGAAACTGACTTTAAGGTTTTCCTCTAGTTGCCTC  98
       |||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  -ATACTT-GAACATGTGAAACTGACTTTAAGGTTTT-CTCTAGTTGCCTC  95

seq1  TACCAGGGTTCTTACATGGTCAGCCCAAGTCAAGCTACATTTAGGATTAA  148
      || |||||||||||||||||||| ||||||||||||||||||| || |||
seq2  TA-CAGGGTTCTTACATGGTCAG-CCAAGTCAAGCTACATTTA-GAATAA  142

seq1  AGAATGTGCTCAAGGAAGCTGACAGACCCAGGGAAAAAGAAGTTTTGCTC  198
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  AGAATGTGCTCAA-GAAGCTGACAGACCCA-GGAAAAAGAAGTTTTGCTC  190

seq1  AGACTAACAGTGGGGTCCACCAGAGCATAGCCCAT-CCATAGTATTCTTT  247
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACTAACAGTGGGGTCCACCAGAGCATAGCCCATCCCATAGTATTCTTT  240

seq1  GG-AAAAACTACC-AAAGTCATTGGTGCAAGAGCAATAATATCCTTCCTT  295
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAACTACCAAAAGTCATTGGTGCAAGAGCAATAATATCCTTCCTT  290

seq1  TGAATGGTTCACAGAGGATATGTTCTTTAAAACCACATAGCAGGGCAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTTCACAGAGGATATGTTCTTTAAAACCACATAGCAGGGCAATG  340

seq1  ATGGCACAGTTTTATTTTCAGCACTAGAGAGGCAGAGGCAGACACAGGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGTTTTATTTTCAGCACTAGAGAGGCAGAGGCAGACACAGGCA  390

seq1  GATCTCTGAGTTGGGGGACAGCCAGGACTACACAAGTGAAGCCTTGTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGTTGGGGGACAGCCAGGACTACACAAGTGAAGCCTTGTCTC  440

seq1  AAACAAACAAACAAACAAACAAACAAAAAAAAAACAAAAAAGAAACAAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACAAAAAAAAAACAAAAAAGAAACAAGC  490

seq1  AAAGACCAACCAAACAAACAAAACCACATCAGATCAAATCAGCTCTGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAACCAAACAAACAAAACCACATCAGATCAAATCAGCTCTGTGT  540

seq1  CTAAGGCTCTGAGATACTTAGGAATAGATTGCTTTCTGTTGTTTGAGATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTCTGAGATACTTAGGAATAGATTGCTTTCTGTTGTTTGAGATG  590

seq1  TAAATGTTTCTTTATATCTCCCATCACATCTCTGGTCTGAAAGGACAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTCTTTATATCTCCCATCACATCTCTGGTCTGAAAGGACAGGA  640

seq1  AGAGAACGGGAATCTGTTCCATGAAAGGGAAGAGAGGAAGAGCTATGGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGGGAATCTGTTCCATGAAAGGGAAGAGAGGAAGAGCTATGGAG  690

seq1  AGGAGAGGGGCTGGGAAGTCTCTCCCATGAGAAATCACAGTGACAGCCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGGCTGGGAAGTCTCTCCCATGAGAAATCACAGTGACAGCCTG  740

seq1  CTGGCATGGGCTGAAGGGCTTGAAAGGACAGAAATGCTGAATATTGAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGGGCTGAAGGGCTTGAAAGGACAGAAATGCTGAATATTGAGAA  790

seq1  AACGTGTGTGATTTCCTAGTGTTGTGTGAACACCCTGCCCTCTGGCTGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTGTGATTTCCTAGTGTTGTGTGAACACCCTGCCCTCTGGCTGCC  840

seq1  TCCTTTCCATCCCTGGCAGTGCTCTAACACGTCAAGAAAACCGAGTTTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCATCCCTGGCAGTGCTCTAACACGTCAAGAAAACCGAGTTTTA  890

seq1  TCCTCAAGTGCCTGGTCAGTTGTGTCTGGTGCCAGCAGAAGAGGGAATGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGTGCCTGGTCAGTTGTGTCTGGTGCCAGCAGAAGAGGGAATGA  940

seq1  CTTGTCTCCAGATGTTGGAGCAGGAAGCCGAGAACAGCTGCATGAGTCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCCAGATGTTGGAGCAGGAAGCCGAGAACAGCTGCATGAGTCAA  990

seq1  GATGTGAATGAGACCAAGAATTTACAGGGCAGGCAAATTAAAACCAGAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAATGAGACCAAGAATTTACAGGGCAGGCAAATTAAAACCAGAGC  1040

seq1  ACTTCTGAGAAATTAAGATGCCAAGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  ACTTCTGAGAAATTAAGATGCCAAGAATTC  1070