BAC Information

Click to search

BAC

Clone NameB6Ng01-038P13
Chromosome1 (Build37)
Map Location 65,834,090 - 65,835,287
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P13.bB6Ng01-038P13.g
ACCDH866378DH866379
length1,2351,175
definitionDH866378|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P13, 5' end.DH866379|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattttagaaaagattcctgctgttaatatgcttttcctgttata
attaaacatatttaacaatcaccaagtattagcccaccccttttgagcag
atctctgcagatctataaagatgtactgtcttgtactgattgatgctcta
tagatgaacagatgacttcttaattcttagtgatgatcttacaagaactc
ctaaaattatatgattattaagctctgttatagtgggactgctattagat
ccttttatgatagttaaaactacaatcagaactctgtcagtctgtgtcac
cagtttattgttttttagtaagcatactttttcctactcagaacacagtc
caagaggttgtaaaacaattaaccaaaggtcataaaaagggaactaacaa
tttattgtaggtgctaggacagaagataaaatactgactaggtttatcta
tacaaaactttattaataacttagctatggtttttaattttcaatgaacc
cgtagagttgtgacaggtgatggatgtttagccagataatttattcctaa
tggatatgcatgtaagcattctctgttgtaaacgctttcaatttatgatt
ttgtgtgtgtgtgtgtgtgtgtgtgtgaacttgtggtgaactttttaata
tgtgatcatgtattctgaatgatgtataagtgctaaggacaaagagatga
gaaggagaatttttcccttacccaacttaggatcttcctgcttctttttt
tttttcttagatagctttaatagagactttttacaacttagtaataaatt
ctataatcacttttcaaggtgttcctttttcttcctgtaacttctaacta
gctatctgaaagttagaacagtgcagttcctgctgacatagaacacaggc
cacattcttaatcacctggtgctaggctataggtgtcaatctcctatgct
agcacctatttaccctcggaaagagtaaaaagttttaagggctttttaga
gtatcatcagcattcagtaagatagagaacctaggaattctataaacctt
cagactttaaagcacccagtgtcctactatgtacttgcactactctctca
gcaggaggtcccgaattaagatctcttacctaatctacataaataactcc
tggctcagagaggtatgccaagacttactgatcatgattcggatgttatt
cgctgaacaaagtgaagaaagactcaatcgtttat
gaattcttttgtttagaaaattgcttcattcctcgaaacatttctgtggt
cttctatagacttcatgaagactgaaaaaaaagttacttttgttttcttc
tagacatacagcccaggttaaaggtatgtctggatagtgtattagtagga
aaatgtgaataaaggttatgctagagatagaattagaacggcatctttgt
tttcttctcctgtgatgctgttcagtacacagaaactccttagggtacta
ctaatcgcaattttgagaaccaatttaatttctaatctgtgtttggactc
tcttcctttcttttaaatacttatcccaaaattccaggtagaggaaatgc
ttcatactaagttgggccgtatgaaatatgctgggtgggcagctgcttag
gggatatattttgtacttgcttcactcaccctgagcctgttgacatccac
ccacaagacaaaaggtcagaaaacagcagcatccttgtaattttaccgta
ttagtatttcctgttttagttactgccattgacttattgacatctaagtt
gtttctaaattaaaaaaaaaaaacacaccaaaaaaataaaccttgctgcc
atttcctttttctgattcatacagctaataaattgctcttgggtattaca
agcgttgaggcagaaggaagatagcaactctgacttataagaaaagtcaa
acaaacacattaaccttttaaaaaatgcatgtaactaagagcgagctatc
ttaacctgtgaagaagactgacgttatactcaaaattatttcttaaattt
atatttgtatcttaatcaaaggaatattgtaggaaaccataagacttgag
tatctcatgcatcaatggttgtttccctgttatacaaattatatgttagg
catgagtgctttttatgagagtagaaccaggcgcactatgtgagaaatat
agcatttcacctactatgtatgtgtttactctctaatctaatacactatc
tatttgctttggagggctgtatgcataactgctgtgggtagtttagaaac
tacccagcctcataacaactttatcatctgtttcagtttctgatgtacct
tatggaaatctgaaggcctctatgcttaaccggaaggttttgatatggct
tggcaagttcctgctaagcagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65834090_65835287
seq2: B6Ng01-038P13.g_67_1241

seq1  GAATTCTTTTGTTTAGAAAATTGCTTCATTCCTCGAAACATTTCTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTTTAGAAAATTGCTTCATTCCTCGAAACATTTCTGTGGT  50

seq1  CTTCTATAGACTTCATGAAGACTGAAAAAAAAGTTACTTTTGTTTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATAGACTTCATGAAGACTGAAAAAAAAGTTACTTTTGTTTTCTTC  100

seq1  TAGACATACAGCCCAGGTTAAAGGTATGTCTGGATAGTGTATTAGTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATACAGCCCAGGTTAAAGGTATGTCTGGATAGTGTATTAGTAGGA  150

seq1  AAATGTGAATAAAGGTTATGCTAGAGATAGAATTAGAACGGCATCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAATAAAGGTTATGCTAGAGATAGAATTAGAACGGCATCTTTGT  200

seq1  TTTCTTCTCCTGTGATGCTGTTCAGTACACAGAAACTCCTTAGGGTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCCTGTGATGCTGTTCAGTACACAGAAACTCCTTAGGGTACTA  250

seq1  CTAATCGCAATTTTGAGAACCAATTTAATTTCTAATCTGTGTTTGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCGCAATTTTGAGAACCAATTTAATTTCTAATCTGTGTTTGGACTC  300

seq1  TCTTCCTTTCTTTTAAATACTTATCCCAAAATTCCAGGTAGAGGAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCTTTTAAATACTTATCCCAAAATTCCAGGTAGAGGAAATGC  350

seq1  TTCATACTAAGTTGGGCCGTATGAAATATGCTGGGTGGGCAGCTGCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTAAGTTGGGCCGTATGAAATATGCTGGGTGGGCAGCTGCTTAG  400

seq1  GGGATATATTTTGTACTTGCTTCACTCACCCTGAGCCTGTTGACATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATATTTTGTACTTGCTTCACTCACCCTGAGCCTGTTGACATCCAC  450

seq1  CCACAAGACAAAAGGTCAGAAAACAGCAGCATCCTTGTAATTTTACCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGACAAAAGGTCAGAAAACAGCAGCATCCTTGTAATTTTACCGTA  500

seq1  TTAGTATTTCCTGTTTTAGTTACTGCCATTGACTTATTGACATCTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTTCCTGTTTTAGTTACTGCCATTGACTTATTGACATCTAAGTT  550

seq1  GTTTCTAAATTAAAAAAAAAAAACACACCAAAAAAATAAACCTTGCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAATTAAAAAAAAAAAACACACCAAAAAAATAAACCTTGCTGCC  600

seq1  ATTTCCTTTTTCTGATTCATACAGCTAATAAATTGCTCTTGGGTATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTTCTGATTCATACAGCTAATAAATTGCTCTTGGGTATTACA  650

seq1  AGCGTTGAGGCAGAAGGAAGATAGCAACTCTGACTTATAAGAAAAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGAGGCAGAAGGAAGATAGCAACTCTGACTTATAAGAAAAGTCAA  700

seq1  ACAAACACATTAACCTTTTAAAAAATGCATGTAACTAAGAGCGAGCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATTAACCTTTTAAAAAATGCATGTAACTAAGAGCGAGCTATC  750

seq1  TTAACCTGTGAAGAAGACTGACGTTATACTCAAAATTATTTCTTAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTGTGAAGAAGACTGACGTTATACTCAAAATTATTTCTTAAATTT  800

seq1  ATATTTGTATCTTAATCAAAGGAATATTGTAGGAAACCATAAGACTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTATCTTAATCAAAGGAATATTGTAGGAAACCATAAGACTTGAG  850

seq1  TATCTCATGCATCAATGGTTGTTTCCCTGTTATACAAATAATATGTTAGG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCTCATGCATCAATGGTTGTTTCCCTGTTATACAAATTATATGTTAGG  900

seq1  CATGAGTGCTTTTTATGAGAGTAGAACCAGGCGCACTATGTGAGAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGCTTTTTATGAGAGTAGAACCAGGCGCACTATGTGAGAAATAT  950

seq1  AGCATTTCACCTACTATGTATGTGTTTACTTCTCTAATCTTAATACACTA  1000
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AGCATTTCACCTACTATGTATGTGTTTAC-TCTCTAATC-TAATACACTA  998

seq1  TTCTACTTTGCTTTGGAGGGGCTGTATGCATAACTGCTGTGGGTAAGTTT  1050
       |||| ||||||||||| |||||||||||||||||||||||||||   ||
seq2  -TCTA-TTTGCTTTGGA-GGGCTGTATGCATAACTGCTGTGGGTA--GTT  1043

seq1  TAGATACCTACCCAGCCTCAATACCACTTTATCATCCTGTATTCTAGTAT  1100
      |||| | |||||||||||||  || |||||||||| |||| ||| ||| |
seq2  TAGA-AACTACCCAGCCTCATAACAACTTTATCAT-CTGT-TTC-AGT-T  1088

seq1  TCTGATAGTACCCTATGGGATATCTGAACGCCTCTAATGCTTAAACAGTG  1150
      |||||| ||||| ||| ||| ||||||| |||||| |||||||| |   |
seq2  TCTGAT-GTACCTTAT-GGAAATCTGAAGGCCTCT-ATGCTTAACC---G  1132

seq1  GAGAGTTTTGATATGGCTATGCAAAAAGTTTCATCTGCTAAGCA-TGCA  1198
      ||  ||||||||||||||  ||   |||||    |||||||||| ||||
seq2  GAAGGTTTTGATATGGCTTGGC---AAGTT---CCTGCTAAGCAGTGCA  1175