BAC Information

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BAC

Clone NameB6Ng01-039F03
Chromosome1 (Build37)
Map Location 188,589,551 - 188,686,653
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
Downstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F03.bB6Ng01-039F03.g
ACCDH866621DH866622
length1,1551,103
definitionDH866621|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F03, 5' end.DH866622|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,589,551 - 188,590,700)(188,685,542 - 188,686,653)
sequence
gaattctaattgtgaagtatgcggggctattaaatagccggtgtgcctct
gtctcttgataagaagtgagttaaataattgtcctgtttaacttctgctt
gttaacctataaggtcaactagtttgaacatacgtttaatgaaatcctag
agccagaatttatgatattgccattgaatgttaaattggacaatttacat
aagcagagcattaaccttctgagcactgaataccgttttagcactcagcc
gctggggacaataagggacatgttctatatatttgtgattagcctgcctg
gaaactctcaggatgaccaattggcctaccaagtttagcagtataattaa
atgaatggactcagcctaagtaaattatcagtgctgtgtacagtatatca
ttacagtctggaggaaaaaaaagatatgaataatttaataatacattact
aatttatcaatgctaagtgacttcgaggaggcccattgtagttcattgtt
ttaaatttgatacttgatttactgtgcatgtgaggggcagacttcttctc
ttccgccaaatacacagaagcagcaggctttgttatttttgtttttccaa
gagaaagaagtgatgttttctgcttcggtgatattacaaaatgcccacta
ctgtgcaccggtgggtcacctagtagtttgtcatcatcagaagtgtggag
tccccactaccaggcagccttagtgaggggaggactctgacccctgagtt
gttcagaagcccagctggcgactctgcagcaattatcattatggtttgga
ggggtcaagcacctggaacagcaatttacagggcacctgggaacgctctg
ctgacagggatcatcggtcctctctgggctgcctatctaggtaaactctg
ttctgtaaactcagcctaatgttgaagtctgtggtgctccagggcttatg
ggtgtatttggtgaaacagtgtgttgttttgacgccagatgggccctctg
ggccttggaatttgtagagtaatccagaaaaattgcaccaggccaagcac
cttcctttttttttttttttttttaaatggaaatcctcacaattattaaa
gcatcccctaaagacaacactagtatggagggtggacatatctctggtat
gactc
gaattccaaaattatcccttttctgcagaattcatagcatctcgataacc
ccacctattatccattaaactatttttgtagattcttgagatttactgcg
ggatccattggttgatacggtgatgatgacaggggcctgacaagcaccag
aattaagcagatgactataggtgaagcaggtgtcacagtattggtgcaca
aagaagctagtatgcttctcactattagatattggatagatgtagaaatt
gtttttccagaaaaaattcaagagtgtttgtataattcattaaagataaa
taaaatgttaaagccaatgtttggaatcatctatttgaatagaaacattt
ttgcctaaaaatcttaatttgtcttccttgcataatttcaaacttgagtt
ccttggggcatctgcatcaaatctaatggctctgatgatcttctgtacat
tgggtagagagggatgtgaagaaggactggacacatgtccatataaattg
ctaaataccacatttaacatgttttagtggttctaaaatgtcatgtctgt
ttacagatgcattatgaaccattattttatgaattctgataaagaaaacc
cctgtcagttcaattatggtgcatctttcaattccaagataggcatagac
ccaaatatcttatttagtccaggctgctgtaagaaaatgccataggcata
ggcttatcaacaacagaaatttattttcatagttctgagggctttgaagt
ctgaggtcagggtgccagtctgacctttctgctaaaggctctcttccaag
ttacaaactgtcagttcctcgtgatacagcaaaggggatagtcagcatgt
ggaatttcttcagaaaggcattagtatcatctcggagggctttgcccatg
ttccctagttattctgtaggagacctcagtctagctagcattagatggga
ttaggggtgtcacacactcttctgagggaggacacagactgtctacccac
tgcaccacaatctctagcatgagaacagaccacgtgcagcacgggttcat
tctgtcattccaaaccctggaaatgatgagcaaaagaattgcctcaagtg
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188589551_188590700
seq2: B6Ng01-039F03.b_41_1195

seq1  GAATTCTAATTGTGAAGTATGCGGGGCTATTAAATAGCCGGTGTGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTGTGAAGTATGCGGGGCTATTAAATAGCCGGTGTGCCTCT  50

seq1  GTCTCTTGATAAGAAGTGAGTTAAATAATTGTCCTGTTTAACTTCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGATAAGAAGTGAGTTAAATAATTGTCCTGTTTAACTTCTGCTT  100

seq1  GTTAACCTATAAGGTCAACTAGTTTGAACATACGTTTAATGAAATCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTATAAGGTCAACTAGTTTGAACATACGTTTAATGAAATCCTAG  150

seq1  AGCCAGAATTTATGATATTGCCATTGAATGTTAAATTGGACAATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATTTATGATATTGCCATTGAATGTTAAATTGGACAATTTACAT  200

seq1  AAGCAGAGCATTAACCTTCTGAGCACTGAATACCGTTTTAGCACTCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGCATTAACCTTCTGAGCACTGAATACCGTTTTAGCACTCAGCC  250

seq1  GCTGGGGACAATAAGGGACATGTTCTATATATTTGTGATTAGCCTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACAATAAGGGACATGTTCTATATATTTGTGATTAGCCTGCCTG  300

seq1  GAAACTCTCAGGATGACCAATTGGCCTACCAAGTTTAGCAGTATAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTCAGGATGACCAATTGGCCTACCAAGTTTAGCAGTATAATTAA  350

seq1  ATGAATGGACTCAGCCTAAGTAAATTATCAGTGCTGTGTACAGTATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGACTCAGCCTAAGTAAATTATCAGTGCTGTGTACAGTATATCA  400

seq1  TTACAGTCTGGAGGAAAAAAAAGATATGAATAATTTAATAATACATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTGGAGGAAAAAAAAGATATGAATAATTTAATAATACATTACT  450

seq1  AATTTATCAATGCTAAGTGACTTCGAGGAGGCCCATTGTAGTTCATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCAATGCTAAGTGACTTCGAGGAGGCCCATTGTAGTTCATTGTT  500

seq1  TTAAATTTGATACTTGATTTACTGTGCATGTGAGGGGCAGACTTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGATACTTGATTTACTGTGCATGTGAGGGGCAGACTTCTTCTC  550

seq1  TTCCGCCAAATACACAGAAGCAGCAGGCTTTGTTATTTTTGTTTTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCCAAATACACAGAAGCAGCAGGCTTTGTTATTTTTGTTTTTCCAA  600

seq1  GAGAAAGAAGTGATGTTTTCTGCTTCGGTGATATTACAAAATGCCCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGTGATGTTTTCTGCTTCGGTGATATTACAAAATGCCCACTA  650

seq1  CTGTGCACCGGTGGGTCACCTAGTAGTTTGTCATCATCAGAAGTGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACCGGTGGGTCACCTAGTAGTTTGTCATCATCAGAAGTGTGGAG  700

seq1  TCCCCACTACCAGGCAGCCTTAGTGAGGGGAGGACTCTGACCCCTGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTACCAGGCAGCCTTAGTGAGGGGAGGACTCTGACCCCTGAGTT  750

seq1  GTTCAGAAGCCCAGCTGGCGACTCTGCAGCAATTATCATTATGGTTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGCCCAGCTGGCGACTCTGCAGCAATTATCATTATGGTTTGGA  800

seq1  GGGGTCAAGCACCTGGAACAGCAATTTACAGGGCACCTGGGAACGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAAGCACCTGGAACAGCAATTTACAGGGCACCTGGGAACGCTCTG  850

seq1  CTGACAGGGATCATCGGTCCTCTCTGGGCTGCCTATCTAGGTAAACTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGGATCATCGGTCCTCTCTGGGCTGCCTATCTAGGTAAACTCTG  900

seq1  TTCTGTAAACTCAGCCTAATGTTGAAGTCTGTGGTGCTCCAGGGCTTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAACTCAGCCTAATGTTGAAGTCTGTGGTGCTCCAGGGCTTATG  950

seq1  GGTGTATTTGGTGAAACAGTGTGTTGTTTTGACGCCAGATGGGCCCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTTGGTGAAACAGTGTGTTGTTTTGACGCCAGATGGGCCCTCTG  1000

seq1  GGCCTTGG-ATTTGTAGAGTAATCCAGAACAGATTGCACCAGGCCAAGCA  1049
      |||||||| |||||||||||||||||||| | ||||||||||||||||||
seq2  GGCCTTGGAATTTGTAGAGTAATCCAGAA-AAATTGCACCAGGCCAAGCA  1049

seq1  -CTTCCTTTTTTTTTTTTTTTTTTTAAAT-GAAAT-CTCACATTTATTAA  1096
       |||||||||||||||||||||||||||| ||||| |||||| |||||||
seq2  CCTTCCTTTTTTTTTTTTTTTTTTTAAATGGAAATCCTCACAATTATTAA  1099

seq1  AGCATCCCCTATAGACAACA-TAGTATGGATGGT-GACATA-CTCTGTAT  1143
      ||||||||||| |||||||| ||||||||| ||| |||||| |||||  |
seq2  AGCATCCCCTAAAGACAACACTAGTATGGAGGGTGGACATATCTCTG-GT  1148

seq1  ATGACTC  1150
      |||||||
seq2  ATGACTC  1155

seq1: chr1_188685542_188686653
seq2: B6Ng01-039F03.g_67_1169 (reverse)

seq1  TCACACTTGAGGCAATTCTCTTGCTTCATCATCT-CAGGGTTTGGGATGA  49
      ||||||||||||||||||| |||| ||||||| | |||||||||| ||||
seq2  TCACACTTGAGGCAATTCTTTTGC-TCATCATTTCCAGGGTTTGGAATGA  49

seq1  CAGGAATGGACCACCGTGCCTGGCACGTGGTCTGCTCTTCATGCTAGAGA  99
      || ||||| ||  ||||||   |||||||||||| || ||||||||||||
seq2  CA-GAATGAAC--CCGTGC--TGCACGTGGTCTGTTC-TCATGCTAGAGA  93

seq1  TTGTTGGTGCAAGTGGGTAGACAGTCTGTGTCCTCCCTCAGAAGAGTGTG  149
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTG-TGGTGC-AGTGGGTAGACAGTCTGTGTCCTCCCTCAGAAGAGTGTG  141

seq1  TTGACA-CCCTAATCCCAATCTAATGCTAGCTAGACCTGAGGTCTCCTAC  198
       ||||| |||||||||| ||||||||||||||||| ||||||||||||||
seq2  -TGACACCCCTAATCCC-ATCTAATGCTAGCTAGA-CTGAGGTCTCCTAC  188

seq1  AG-ATAACTAGGGAACATGGGCAAAGCCCTCCGAGATGATACTAATGCCC  247
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAATAACTAGGGAACATGGGCAAAGCCCTCCGAGATGATACTAATGCCT  238

seq1  TTCTGAAGAAATTCCACATGCTGACTATCCCCTTTGCTGTATCACGAGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGAAATTCCACATGCTGACTATCCCCTTTGCTGTATCACGAGGA  288

seq1  ACTGACAGTTTGTAACTTGGAAGAGAGCCTTTAGCAGAAAGGTCAGACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGTTTGTAACTTGGAAGAGAGCCTTTAGCAGAAAGGTCAGACTG  338

seq1  GCACCCTGACCTCAGACTTCAAAGCCCTCAGAACTATGAAAATAAATTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGACCTCAGACTTCAAAGCCCTCAGAACTATGAAAATAAATTTC  388

seq1  TGTTGTTGATAAGCCTATGCCTATGGCATTTTCTTACAGCAGCCTGGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGATAAGCCTATGCCTATGGCATTTTCTTACAGCAGCCTGGACT  438

seq1  AAATAAGATATTTGGGTCTATGCCTATCTTGGAATTGAAAGATGCACCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATATTTGGGTCTATGCCTATCTTGGAATTGAAAGATGCACCAT  488

seq1  AATTGAACTGACAGGGGTTTTCTTTATCAGAATTCATAAAATAATGGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTGACAGGGGTTTTCTTTATCAGAATTCATAAAATAATGGTTC  538

seq1  ATAATGCATCTGTAAACAGACATGACATTTTAGAACCACTAAAACATGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCATCTGTAAACAGACATGACATTTTAGAACCACTAAAACATGTT  588

seq1  AAATGTGGTATTTAGCAATTTATATGGACATGTGTCCAGTCCTTCTTCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTATTTAGCAATTTATATGGACATGTGTCCAGTCCTTCTTCAC  638

seq1  ATCCCTCTCTACCCAATGTACAGAAGATCATCAGAGCCATTAGATTTGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTCTACCCAATGTACAGAAGATCATCAGAGCCATTAGATTTGAT  688

seq1  GCAGATGCCCCAAGGAACTCAAGTTTGAAATTATGCAAGGAAGACAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCCCCAAGGAACTCAAGTTTGAAATTATGCAAGGAAGACAAATT  738

seq1  AAGATTTTTAGGCAAAAATGTTTCTATTCAAATAGATGATTCCAAACATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTAGGCAAAAATGTTTCTATTCAAATAGATGATTCCAAACATT  788

seq1  GGCTTTAACATTTTATTTATCTTTAATGAATTATACAAACACTCTTGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAACATTTTATTTATCTTTAATGAATTATACAAACACTCTTGAAT  838

seq1  TTTTTCTGGAAAAACAATTTCTACATCTATCCAATATCTAATAGTGAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGAAAAACAATTTCTACATCTATCCAATATCTAATAGTGAGAA  888

seq1  GCATACTAGCTTCTTTGTGCACCAATACTGTGACACCTGCTTCACCTATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTAGCTTCTTTGTGCACCAATACTGTGACACCTGCTTCACCTATA  938

seq1  GTCATCTGCTTAATTCTGGTGCTTGTCAGGCCCCTGTCATCATCACCGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGCTTAATTCTGGTGCTTGTCAGGCCCCTGTCATCATCACCGTA  988

seq1  TCAACCAATGGATCCCGCAGTAAATCTCAAGAATCTACAAAAATAGTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAATGGATCCCGCAGTAAATCTCAAGAATCTACAAAAATAGTTTA  1038

seq1  ATGGATAATAGGTGGGGTTATCGAGATGCTATGAATTCTGCAGAAAAGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAATAGGTGGGGTTATCGAGATGCTATGAATTCTGCAGAAAAGGG  1088

seq1  ATAATTTTGGAATTC  1112
      |||||||||||||||
seq2  ATAATTTTGGAATTC  1103