BAC Information

Click to search

BAC

Clone NameB6Ng01-039F19
Chromosome1 (Build37)
Map Location 41,993,302 - 42,113,862
singlet/doubletdoublet
Overlap geneLOC383634
Upstream genePpia-ps1_352.1, LOC100041441
Downstream geneLOC666582, 2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F19.bB6Ng01-039F19.g
ACCDH866653DH866654
length1,138453
definitionDH866653|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F19, 5' end.DH866654|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,112,721 - 42,113,862)(41,993,302 - 41,993,760)
sequence
gaattcagacttgagtgtttgctaactgctgttgaaaggaagaaaggaaa
ggttcaggccaatgtggagttccccttggttttgaaaaggttgtatatat
ggtagggaagggtctgatcactctagacaactggtcaaccctgttatagg
aaagtgtctcacttgcatggatcccagaggtggccagtgtttctcagcac
aactgaatataatgaagaaaagtagttgcactgcaagctgaaaagtcaat
gaaatgcttcaatctgcttcgacgatgatcttaagtcacaaaacagggtc
tttttcaaattaaatgatgcttgggataagacacatttattgaaaataca
gtgcaaagagcacctatagaaaaggaagtaaagcctgcagtgttataatg
aacatactgatttgaaagactcattgaggccatatccataaccaacaata
tgaataataattggtcgaaacaaaaccactcacgcattaaatgagaacat
ttgtatctcagtgcttgaagcagaatatgctttttatgttagatatctga
aagacacaattcatgacagagccttagctgggctaagcctgttctgaggc
aaatgaatttttagtcagcctaggttggaagaagcagacaacataatttg
aaaaacagtgatgattttcttacatttaaacattgtttatctcaactttg
gtgaaggtcgtctgtctggtctttataatctctggtgttgtttcatctgg
tcacacttttctcctcagtagcttttgggatggaattctccaaaatccaa
accaatttgtaatttcacgaatgaacttaggctacagagtgactggcagt
ggacaggccactggctaaaatcccatagtagacttgtgtgtactatacaa
tgttttaatcataccaccttcggttaaactcagagttctgtagaggatga
gatgcccgtagctcctatagtaaaatataatttttttagatgttgcgttt
gatcagtatttctcccacttggtcactagcattgtgtgggaatccgtaga
aggctaaatttctttgttgtcacagaatttcctttaggaggcatcaatga
ctatgtcaggattggaaaactttggaatgtcataaacc
taaattaattaatatttatacttcttgctttaaatagcagaagacactca
aaatgtatatttgatgccagctaaaattaaaattggtgttttatctgata
atgattcattactgattttatactggtatgaagatggaacttaaggaaat
gttatttcataggctggtacattaaaaacaattgtgttcgtttctactag
gttcttgccattttattataaatatgttattataaacattttattctgct
aagaggtcaagttgtgtcacaatgtctcccacaccctctgttccttatgt
aatgctgtggttcttcttccagtttgtttaatacttttaattcctaaaat
ataaaaagaaaaacttggtcactgctaaatctgatagttaaaagaggcct
tttcatcctaggaaagatgcagtggcttgtgtgtatgtatgttggggggg
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42112721_42113862
seq2: B6Ng01-039F19.b_42_1179 (reverse)

seq1  GGTTTAATTGACATTTTCAAAGGTTTTCAATTCCTGACATAGTCATTGAT  50
      ||||||  |||||  ||| || |||||| | |||||||||||||||||||
seq2  GGTTTA--TGACA--TTCCAAAGTTTTCCAATCCTGACATAGTCATTGAT  46

seq1  GCCTCCTTAAGGAAA-TCTGTGACAACATAGGAAATTATAGCC-TCTACG  98
      ||||||| ||||||| |||||||||||| | |||||| ||||| ||||||
seq2  GCCTCCTAAAGGAAATTCTGTGACAACA-AAGAAATT-TAGCCTTCTACG  94

seq1  GATTCCCACACAATGCTAGTGACCAAGTGGGAGAAATACTGATCAAACGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCACACAATGCTAGTGACCAAGTGGGAGAAATACTGATCAAACGC  144

seq1  AACATCTAAAAAAATTATATTTTACTATAGGAGCTACGGGCATCTCATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAAAAAAATTATATTTTACTATAGGAGCTACGGGCATCTCATCC  194

seq1  TCTACAGAACTCTGAGTTTAACCGAAGGTGGTATGATTAAAACATTGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAACTCTGAGTTTAACCGAAGGTGGTATGATTAAAACATTGTAT  244

seq1  AGTACACACAAGTCTACTATGGGATTTTAGCCAGTGGCCTGTCCACTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACACAAGTCTACTATGGGATTTTAGCCAGTGGCCTGTCCACTGCC  294

seq1  AGTCACTCTGTAGCCTAAGTTCATTCCTGAAATTACAAATTGGTTTGGAT  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTCACTCTGTAGCCTAAGTTCATTCGTGAAATTACAAATTGGTTTGGAT  344

seq1  TTTGGAGAATTCCATCCCAAAAGCTACTGAGGAGAAAAGTGTGACCAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAATTCCATCCCAAAAGCTACTGAGGAGAAAAGTGTGACCAGAT  394

seq1  GAAACAACACCAGAGATTATAAAGACCAGACAGACGACCTTCACCAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACACCAGAGATTATAAAGACCAGACAGACGACCTTCACCAAAGT  444

seq1  TGAGATAAACAATGTTTAAATGTAAGAAAATCATCACTGTTTTTCAAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAACAATGTTTAAATGTAAGAAAATCATCACTGTTTTTCAAATT  494

seq1  ATGTTGTCTGCTTCTTCCAACCTAGGCTGACTAAAAATTCATTTGCCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCTGCTTCTTCCAACCTAGGCTGACTAAAAATTCATTTGCCTCA  544

seq1  GAACAGGCTTAGCCCAGCTAAGGCTCTGTCATGAATTGTGTCTTTCAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGCTTAGCCCAGCTAAGGCTCTGTCATGAATTGTGTCTTTCAGAT  594

seq1  ATCTAACATAAAAAGCATATTCTGCTTCAAGCACTGAGATACAAATGTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATAAAAAGCATATTCTGCTTCAAGCACTGAGATACAAATGTTC  644

seq1  TCATTTAATGCGTGAGTGGTTTTGTTTCGACCAATTATTATTCATATTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATGCGTGAGTGGTTTTGTTTCGACCAATTATTATTCATATTGT  694

seq1  TGGTTATGGATATGGCCTCAATGAGTCTTTCAAATCAGTATGTTCATTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGGATATGGCCTCAATGAGTCTTTCAAATCAGTATGTTCATTAT  744

seq1  AACACTGCAGGCTTTACTTCCTTTTCTATAGGTGCTCTTTGCACTGTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCAGGCTTTACTTCCTTTTCTATAGGTGCTCTTTGCACTGTATT  794

seq1  TTCAATAAATGTGTCTTATCCCAAGCATCATTTAATTTGAAAAAGACCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAATGTGTCTTATCCCAAGCATCATTTAATTTGAAAAAGACCCT  844

seq1  GTTTTGTGACTTAAGATCATCGTCGAAGCAGATTGAAGCATTTCATTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGACTTAAGATCATCGTCGAAGCAGATTGAAGCATTTCATTGAC  894

seq1  TTTTCAGCTTGCAGTGCAACTACTTTTCTTCATTATATTCAGTTGTGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCTTGCAGTGCAACTACTTTTCTTCATTATATTCAGTTGTGCTG  944

seq1  AGAAACACTGGCCACCTCTGGGATCCATGCAAGTGAGACACTTTCCTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTGGCCACCTCTGGGATCCATGCAAGTGAGACACTTTCCTATA  994

seq1  ACAGGGTTGACCAGTTGTCTAGAGTGATCAGACCCTTCCCTACCATATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTGACCAGTTGTCTAGAGTGATCAGACCCTTCCCTACCATATAT  1044

seq1  ACAACCTTTTCAAAACCAAGGGGAACTCCACATTGGCCTGAACCTTTCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTTTCAAAACCAAGGGGAACTCCACATTGGCCTGAACCTTTCCT  1094

seq1  TTCTTCCTTTCAACAGCAGTTAGCAAACACTCAAGTCTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTCAACAGCAGTTAGCAAACACTCAAGTCTGAATTC  1138

seq1: chr1_41993302_41993760
seq2: B6Ng01-039F19.g_66_524

seq1  GAATTCTAAATTAATTAATATTTATACTTCTTGCTTTAAATAGCAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTAATTAATATTTATACTTCTTGCTTTAAATAGCAGAAGA  50

seq1  CACTCAAAATGTATATTTGATGCCAGCTAAAATTAAAATTGGTGTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAAATGTATATTTGATGCCAGCTAAAATTAAAATTGGTGTTTTAT  100

seq1  CTGATAATGATTCATTACTGATTTTATACTGGTATGAAGATGGAACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATGATTCATTACTGATTTTATACTGGTATGAAGATGGAACTTAA  150

seq1  GGAAATGTTATTTCATAGGCTGGTACATTAAAAACAATTGTGTTCGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTTATTTCATAGGCTGGTACATTAAAAACAATTGTGTTCGTTTC  200

seq1  TACTAGGTTCTTGCCATTTTATTATAAATATGTTATTATAAACATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTTCTTGCCATTTTATTATAAATATGTTATTATAAACATTTTAT  250

seq1  TCTGCTAAGAGGTCAAGTTGTGTCACAATGTCTCCCACACCCTCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAAGAGGTCAAGTTGTGTCACAATGTCTCCCACACCCTCTGTTCC  300

seq1  TTATGTAATGCTGTGGTTCTTCTTCCAGTTTGTTTAATACTTTTAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAATGCTGTGGTTCTTCTTCCAGTTTGTTTAATACTTTTAATTCC  350

seq1  TAAAATATAAAAAGAAAAACTTGGTCACTGCTAAATCTGATAGTTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATAAAAAGAAAAACTTGGTCACTGCTAAATCTGATAGTTAAAAG  400

seq1  AGGCCTTTTCATCCTAGGAAAGATGCAGTGGCTTGTGTGTATGTATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTTCATCCTAGGAAAGATGCAGTGGCTTGTGTGTATGTATGTTG  450

seq1  GGGGGGGGA  459
      |||||||||
seq2  GGGGGGGGA  459