BAC Information

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BAC

Clone NameB6Ng01-039I15
Chromosome1 (Build37)
Map Location 135,261,636 - 135,418,303
singlet/doubletdoublet
Overlap geneEtnk2, Sox13
Upstream geneTmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1
Downstream geneLOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I15.bB6Ng01-039I15.g
ACCDH866784DH866785
length1,1031,102
definitionDH866784|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I15, 5' end.DH866785|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,417,193 - 135,418,303)(135,261,636 - 135,262,752)
sequence
gaattcttcctgcttccacctcccaagtgctaagactataggagtgcatc
gcctctccaggctccccacactttctgattgccaaagtgggcatactaga
ttcagacactaggcaaggtagtcactctcagagtcaggctccagtactag
tggggagaggttacccctttaaagtgcttctgaagtgccttcaaagttgg
tccgtggtttcacccaaggctctggagagaaactcccaaggactaactcc
gtgctgaggaatgagctcgcttctatctgtgcccatatgtatggatcctc
cccgctataaaaacaggaagaatgttcgacaaaatcagctccactgtctt
ccttcttgctacagcagctggtcctgcctctgctctcttctcggagctga
gcctggagcagggagaagagctcctgagtttgaatggctgccttttacag
ccccacccccacccccgtccccgtccccgacccgctcccatcacgtcccc
acgctcatggctgcccatgcctactaagcactagaatctaaactgtctaa
ggcatgcttcccttcatggcttactttccatggaagcaaggatcttaccc
taatcgcctgtccaaggccaagaatgtgacacccagtggttaaaatcaca
gtggcgacttgttcataatgaaggaccaccagccgaatggcctggcctca
ctaggcacaatgcgtacccttccaaagctgagcggcaagacatgagtcag
gcccgtggccttccttagaagcctagggcatcattcacaggcccagcatg
aaggcacgggcatctggtagctagttgtgtgcttatctgctgcaacctag
ccaggaatgtcaccccttccccagaccacattccatttctaggcctgccg
ggaaaggggccctctgaagcaaggcttccctaaccagaggctgttacagg
cgccaaggtccggactatagcagttctagttctgtctccataattcctgg
tcagatttcagaattccaccttgggcatcagccctctcacatggaaggga
acaaaccattttgtccttatgttctaaaaatgtactgttggtgggagggt
gcc
gaattcagagattcaaggacctctggccaccaaagccctgggaagagtgc
caacttcagtaccctccttgtctctctgccactggatagagcaggagata
cagctctgagagcccttgcctgccttaatgagaggcagctgatcagggtg
tctgtctgggcaatttctagccctccctggctacattcttgcctgcagtg
gggttctttcagggccaggatggagaaaggaggggagggcctctctccag
cgcctagtgcagacgtggccactgtgctagatagcatggcctggacgcgc
agctaggctgagtgagtgtgcctggactcagtgtggctgctccttcccat
ccaccaccatgagtgtccctttattccaaggcacagtttagtactagctg
gcgtggggttatgttcagcattccagtgaacgaattctgttttgactgaa
gctctgggaagagagcggaggaccatgccgcaccctcccacccatggctg
tcctctccccatgctagcgcttcaaagacggcatcaccaacaagctattg
gcctgctatgtggaggaggacatgcgggactgcgtgttggtccgggtgta
tggggagcgcacggagttgctggtggaccgggagaatgaggtcagaaact
tccaactgctgcgagcacacggctgcgcccccaaactctactgtaccttt
cagaacgggctgtgctacgagtatgtgcagggtgtggccctgggacctga
acacatccgagagccccagctcttcaggtgaggagggaacagggcattat
acatcattttctcagaggctgtggttttgatggtcttggctgtgaacaat
gaagagagtcataaggcccgccattgcattgaaatatttgttaatatatg
ctactcagaggctacaccattctataggcttacagggtatccactagagg
gttgagttccagggaacacagcagagaccaggttgtaccgcaccccaccc
caccccattttcaaacctctgtcccttgtctgccgtgaaatgtcaaagcc
ccggaatgacgtctgagccaattctgaaggcaccagctttctccctgctg
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135417193_135418303
seq2: B6Ng01-039I15.b_44_1146 (reverse)

seq1  GGCACCCCTCACACCACCAGTACATCTTTTTAAGACATAA-GACAAAATG  49
      |||| ||||| ||||| |||||||  ||||||  |||||| |||||||||
seq2  GGCA-CCCTCCCACCAACAGTACA--TTTTTAGAACATAAGGACAAAATG  47

seq1  GTTTGTTCCCTTTCCATGTGAGA-GGCTGATGCCCAAGGTTGGAATCCTG  98
      |||||||||| |||||||||||| ||||||||||||||| |||||| |||
seq2  GTTTGTTCCC-TTCCATGTGAGAGGGCTGATGCCCAAGG-TGGAATTCTG  95

seq1  AATATCTGACCAGGAATTATGGAGACAGAACTAAGAACTGCTATAGTCCG  148
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AA-ATCTGACCAGGAATTATGGAGACAGAACT-AGAACTGCTATAGTCCG  143

seq1  GACCTTGGCGCCTGTGAACAGCCTCTGGTTAGGGAAGCCTTGCTTCAGAG  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  GACCTTGGCGCCTGT-AACAGCCTCTGGTTAGGGAAGCCTTGCTTCAGA-  191

seq1  GGGCCCCTTTCCCGGCAGGCCTAGAAATGGAATGTGGTCTGGGGGAAGGG  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGCCCCTTTCCCGGCAGGCCTAGAAATGGAATGTGGTCT-GGGGAAGGG  240

seq1  GTGACATTCCTGGCTAGGTTGCAGCAGATAAGCACACAACTAGCTACCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTCCTGGCTAGGTTGCAGCAGATAAGCACACAACTAGCTACCAG  290

seq1  ATGCCCGTGCCTTCATGCTGGGCCTGTGAATGATGCCCTAGGCTTCTAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGTGCCTTCATGCTGGGCCTGTGAATGATGCCCTAGGCTTCTAAG  340

seq1  GAAGGCCACGGGCCTGACTCATGTCTTGCCGCTCAGCTTTGGAAGGGTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCACGGGCCTGACTCATGTCTTGCCGCTCAGCTTTGGAAGGGTAC  390

seq1  GCATTGTGCCTAGTGAGGCCAGGCCATTCGGCTGGTGGTCCTTCATTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGCCTAGTGAGGCCAGGCCATTCGGCTGGTGGTCCTTCATTATG  440

seq1  AACAAGTCGCCACTGTGATTTTAACCACTGGGTGTCACATTCTTGGCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTCGCCACTGTGATTTTAACCACTGGGTGTCACATTCTTGGCCTT  490

seq1  GGACAGGCGATTAGGGTAAGATCCTTGCTTCCATGGAAAGTAAGCCATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCGATTAGGGTAAGATCCTTGCTTCCATGGAAAGTAAGCCATGA  540

seq1  AGGGAAGCATGCCTTAGACAGTTTAGATTCTAGTGCTTAGTAGGCATGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCATGCCTTAGACAGTTTAGATTCTAGTGCTTAGTAGGCATGGG  590

seq1  CAGCCATGAGCGTGGGGACGTGATGGGAGCGGGTCGGGGACGGGGACGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGAGCGTGGGGACGTGATGGGAGCGGGTCGGGGACGGGGACGGG  640

seq1  GGTGGGGGTGGGGCTGTAAAAGGCAGCCATTCAAACTCAGGAGCTCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGGCTGTAAAAGGCAGCCATTCAAACTCAGGAGCTCTTCT  690

seq1  CCCTGCTCCAGGCTCAGCTCCGAGAAGAGAGCAGAGGCAGGACCAGCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCCAGGCTCAGCTCCGAGAAGAGAGCAGAGGCAGGACCAGCTGC  740

seq1  TGTAGCAAGAAGGAAGACAGTGGAGCTGATTTTGTCGAACATTCTTCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAGAAGGAAGACAGTGGAGCTGATTTTGTCGAACATTCTTCCTG  790

seq1  TTTTTATAGCGGGGAGGATCCATACATATGGGCACAGATAGAAGCGAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGCGGGGAGGATCCATACATATGGGCACAGATAGAAGCGAGCT  840

seq1  CATTCCTCAGCACGGAGTTAGTCCTTGGGAGTTTCTCTCCAGAGCCTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCAGCACGGAGTTAGTCCTTGGGAGTTTCTCTCCAGAGCCTTGG  890

seq1  GTGAAACCACGGACCAACTTTGAAGGCACTTCAGAAGCACTTTAAAGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCACGGACCAACTTTGAAGGCACTTCAGAAGCACTTTAAAGGGG  940

seq1  TAACCTCTCCCCACTAGTACTGGAGCCTGACTCTGAGAGTGACTACCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTCCCCACTAGTACTGGAGCCTGACTCTGAGAGTGACTACCTTG  990

seq1  CCTAGTGTCTGAATCTAGTATGCCCACTTTGGCAATCAGAAAGTGTGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTCTGAATCTAGTATGCCCACTTTGGCAATCAGAAAGTGTGGGG  1040

seq1  AGCCTGGAGAGGCGATGCACTCCTATAGTCTTAGCACTTGGGAGGTGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAGAGGCGATGCACTCCTATAGTCTTAGCACTTGGGAGGTGGAA  1090

seq1  GCAGGAAGAATTC  1111
      |||||||||||||
seq2  GCAGGAAGAATTC  1103

seq1: chr1_135261636_135262752
seq2: B6Ng01-039I15.g_64_1165

seq1  GAATTCAGAGATTCAAGGACCTCTGGCCACCAAAGCCCTGGGAAGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTCAAGGACCTCTGGCCACCAAAGCCCTGGGAAGAGTGC  50

seq1  CAACTTCAGTACCCTCCTTGTCTCTCTGCCACTGGATAGAGCAGGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAGTACCCTCCTTGTCTCTCTGCCACTGGATAGAGCAGGAGATA  100

seq1  CAGCTCTGAGAGCCCTTGCCTGCCTTAATGAGAGGCAGCTGATCAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAGAGCCCTTGCCTGCCTTAATGAGAGGCAGCTGATCAGGGTG  150

seq1  TCTGTCTGGGCAATTTCTAGCCCTCCCTGGCTACATTCTTGCCTGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGGCAATTTCTAGCCCTCCCTGGCTACATTCTTGCCTGCAGTG  200

seq1  GGGTTCTTTCAGGGCCAGGATGGAGAAAGGAGGGGAGGGCCTCTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTCAGGGCCAGGATGGAGAAAGGAGGGGAGGGCCTCTCTCCAG  250

seq1  CGCCTAGTGCAGACGTGGCCACTGTGCTAGATAGCATGGCCTGGACGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTAGTGCAGACGTGGCCACTGTGCTAGATAGCATGGCCTGGACGCGC  300

seq1  AGCTAGGCTGAGTGAGTGTGCCTGGACTCAGTGTGGCTGCTCCTTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGAGTGAGTGTGCCTGGACTCAGTGTGGCTGCTCCTTCCCAT  350

seq1  CCACCACCATGAGTGTCCCTTTATTCCAAGGCACAGTTTAGTACTAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCATGAGTGTCCCTTTATTCCAAGGCACAGTTTAGTACTAGCTG  400

seq1  GCGTGGGGTTATGTTCAGCATTCCAGTGAACGAATTCTGTTTTGACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGGTTATGTTCAGCATTCCAGTGAACGAATTCTGTTTTGACTGAA  450

seq1  GCTCTGGGAAGAGAGCGGAGGACCATGCCGCACCCTCCCACCCATGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAAGAGAGCGGAGGACCATGCCGCACCCTCCCACCCATGGCTG  500

seq1  TCCTCTCCCCATGCTAGCGCTTCAAAGACGGCATCACCAACAAGCTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCCATGCTAGCGCTTCAAAGACGGCATCACCAACAAGCTATTG  550

seq1  GCCTGCTATGTGGAGGAGGACATGCGGGACTGCGTGTTGGTCCGGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTATGTGGAGGAGGACATGCGGGACTGCGTGTTGGTCCGGGTGTA  600

seq1  TGGGGAGCGCACGGAGTTGCTGGTGGACCGGGAGAATGAGGTCAGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCGCACGGAGTTGCTGGTGGACCGGGAGAATGAGGTCAGAAACT  650

seq1  TCCAACTGCTGCGAGCACACGGCTGCGCCCCCAAACTCTACTGTACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCTGCGAGCACACGGCTGCGCCCCCAAACTCTACTGTACCTTT  700

seq1  CAGAACGGGCTGTGCTACGAGTATGTGCAGGGTGTGGCCCTGGGACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGGGCTGTGCTACGAGTATGTGCAGGGTGTGGCCCTGGGACCTGA  750

seq1  ACACATCCGAGAGCCCCAGCTCTTCAGGTGAGGAGGGAACAGGGCATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCGAGAGCCCCAGCTCTTCAGGTGAGGAGGGAACAGGGCATTAT  800

seq1  ACATCATTTTCTCAGAGGCTGTGGTTTTGATGGTCTTGGCTGTGAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTTTCTCAGAGGCTGTGGTTTTGATGGTCTTGGCTGTGAACAAT  850

seq1  GAAGAGAGTCATAAGGCCCGCCATTGCATTGAAAATATTTGTTAATATAT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAGAGAGTCATAAGGCCCGCCATTGCATTG-AAATATTTGTTAATATAT  899

seq1  GCTACTCAGAGGCTACACCATTCTATAGGCTTACAGGGGTATCCACTAGA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTACTCAGAGGCTACACCATTCTATAGGCTTACA-GGGTATCCACTAGA  948

seq1  GGGTTGAGTTCCAGGGGAACACAGCAGAGACCAGGTTGTTACCGCACCCC  1000
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GGGTTGAGTTCCA-GGGAACACAGCAGAGACCAGGTTG-TACCGCACCCC  996

seq1  ACCCCACCCCATTTCTCAAACCTCTGTCCACTTGTCTGCCGTGGAAATGT  1050
      |||||||||||||| |||||||||||||| |||||||||||| |||||| 
seq2  ACCCCACCCCATTT-TCAAACCTCTGTCC-CTTGTCTGCCGT-GAAATG-  1042

seq1  TCAGAAGCCCCGGGAATGACGTCTGAGCCAAATTCTGAAGGCACACAGGC  1100
      ||| ||||||| ||||||||||||||||| |||||||||||||| || ||
seq2  TCA-AAGCCCC-GGAATGACGTCTGAGCC-AATTCTGAAGGCAC-CA-GC  1087

seq1  TTTCTACCCTGCCTGTC  1117
      ||||| ||||| |||||
seq2  TTTCT-CCCTG-CTGTC  1102