BAC Information

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BAC

Clone NameB6Ng01-039M21
Chromosome1 (Build37)
Map Location 107,412,066 - 107,568,080
singlet/doubletdoublet
Overlap genePign, LOC666249, 2310035C23Rik
Upstream geneLOC100041134, Cdh20, Rnf152, LOC100041985
Downstream geneLOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M21.bB6Ng01-039M21.g
ACCDH866962DH866963
length1,1481,048
definitionDH866962|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M21, 5' end.DH866963|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,566,924 - 107,568,080)(107,412,066 - 107,413,126)
sequence
gaattcaatataattcaatgaaaacatgtaatatataaatttaataggtc
aaaaatttaaccttaaaagtaatcaattatatcaaagctcaagttcatac
acattaggtacttaaggatagatcttagcaattcatgtctgagaaagtga
acctataaagtgcttctaaaatatgaacactataaagcagtaatatccaa
atttttctagttttgcagtaatgcaaatctgctcccagtactaatagatt
attttcttatcaatgggcactgtgtttatgaacaccagagtaaaaccaaa
tagtttgcctcctcttgctaatcaagtttagtgtttgaaatggttacaaa
tattaggaactttggtagctcttgacatttgacctagtgtttaaaaaagc
taatgtttgcacataccaagacctagacattgctcatgaactaaaaaggt
gatgtgtcttctactgccaactgctttatctccaatgctgggtctcattt
ttcactagccactattttcaaaatatttgaaggctagatggtccaagttt
gccattttacagatgagaaatgaaggttttatatttattaaatcaacttg
ctaacctttgtggaagagttaaacataaaaattttttatttaacttattt
aactttaaatgagtcaacaagcaatgagaataaagccacatatgtagata
acaaatcaatcattttgtgataaactgtgcacaatttaagagtagaattt
ctatcttttaatttgcagtctgtgtcacaagattctacaagctaaacttc
aaggtcaaaatatttaaacttagaagcttataggctaaaacaatccacaa
accatataaatggttaaaattttgatagcaataagtgatttttaccttat
gccaggctgttaggcaataagataattataatctataaattatttattag
cattctttctgaccagttattatgtggcagatactttatagacacttagt
taactttttaacactccatgcagagagttactaccatcagcatttataag
caagaaacagacctgcaactcaaaggtgaaatttcacatgtagggacttc
cttccgaagaaatgaatatggtgactatgtcagggaagtatcaagaac
gaattccaatatatcacccagtctcacaaccttatttccatgacatttat
ttgattctcatcaacaatgttcttcctgaggagtgcaagcaggtctggga
tcaggctagagcacatacagacgatgtccagacaactcgcctcttggcct
gtttctacaagcctgcccataaagtgttatttcttctcccagagtttctc
tgacattaaggccaaacttcaaggtctagaaagggagttgccaactccgt
aggtagaagtcttagcagtggccttcaaggtataacatgggggagaggaa
aaggcccagaaacaaaaatacctgacactagtgaaggcctttcagttggt
catagcaactgcccaggctccctggcctctcaatgcccaagaaatcccag
gttcctgtctctaatacgattgagagaactgaaacaggctgacttcatga
taggcatcaaacaggtaggtcaagagactaggcctagatctttaccaaaa
ctggataagaccaggcaagtcagttactagaaaaacaaataaacaaacaa
aaacccaggtctccagcagccaattggaaactgcatcaccatcagaagct
gtcccaccactgctgtgaatgggtctgtagttcttgtgaaccaatcccct
aatgaataatgaagccaatcactggtcaagtaggcaggacttccaggttg
gacagaggaagagaggaagcaggagggagggcccttttcaggcggggata
gcaacaggataagatatagatacgagtgtctctaggtttcagtggtggct
ccatcaggatttgctagggaggatttaataaggcttacaagattagaatt
ttagttgctgcgcccagcatttgagttatctttgtttctgaagtaagttg
tgtgtgttttccttctcatggtggctcatctggggtctagagagaaagta
tggtggcaaagtgtgggtttgcctgagtgcaccaaacgtcgtggggattt
gaaacacaggtgtcgtgtagtgacccgcagtgaactagtgagctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107566924_107568080
seq2: B6Ng01-039M21.b_49_1196 (reverse)

seq1  GTTCTTGATAACTTTTCCTGACATAGTCA-CATATTCATTTTCTTCTGAA  49
      ||||||||||   || ||||||||||||| |||||||| ||||||| | |
seq2  GTTCTTGATA--CTTCCCTGACATAGTCACCATATTCA-TTTCTTC-GGA  46

seq1  AGGAAGTCCCTACATGTGAAATCTCACTTTTGAGTTGCAGGTCTGTTTCT  99
      |||||||||||||||||||||| |||| ||||||||||||||||||||| 
seq2  AGGAAGTCCCTACATGTGAAATTTCACCTTTGAGTTGCAGGTCTGTTTC-  95

seq1  TTGCTATAAAATGCTGATGGTAGTAACTCTTCTGCATGGAGTTGTTATAA  149
      |||||   ||||||||||||||||||||| ||||||||||| ||||| ||
seq2  TTGCTTATAAATGCTGATGGTAGTAACTC-TCTGCATGGAG-TGTTA-AA  142

seq1  AAGTTAACTAAGTTGTCTATAAAGTATCTGCCACATAATAACTGGTCAGA  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACTAAG-TGTCTATAAAGTATCTGCCACATAATAACTGGTCAGA  191

seq1  AAGAATGCTAATAAATAATTTATAGATTATAATTATCCTTATTGCCTAAC  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGAATGCTAATAAATAATTTATAGATTATAATTAT-CTTATTGCCTAAC  240

seq1  AGCCTGGCATAAGGTAAAAATCACTTATTGCTATCAAAATTTTAACCATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCATAAGGTAAAAATCACTTATTGCTATCAAAATTTTAACCATT  290

seq1  TATATGGTTTGTGGATTGTTTTAGCCTATAAGCTTCTAAGTTTAAATATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTTTGTGGATTGTTTTAGCCTATAAGCTTCTAAGTTTAAATATT  340

seq1  TTGACCTTGAAGTTTAGCTTGTAGAATCTTGTGACACAGACTGCAAATTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGAAGTTTAGCTTGTAGAATCTTGTGACACAGACTGCAAATTA  390

seq1  AAAGATAGAAATTCTACTCTTAAATTGTGCACAGTTTATCACAAAATGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGAAATTCTACTCTTAAATTGTGCACAGTTTATCACAAAATGAT  440

seq1  TGATTTGTTATCTACATATGTGGCTTTATTCTCATTGCTTGTTGACTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTATCTACATATGTGGCTTTATTCTCATTGCTTGTTGACTCAT  490

seq1  TTAAAGTTAAATAAGTTAAATAAAAAATTTTTATGTTTAACTCTTCCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTAAATAAGTTAAATAAAAAATTTTTATGTTTAACTCTTCCACA  540

seq1  AAGGTTAGCAAGTTGATTTAATAAATATAAAACCTTCATTTCTCATCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGCAAGTTGATTTAATAAATATAAAACCTTCATTTCTCATCTGT  590

seq1  AAAATGGCAAACTTGGACCATCTAGCCTTCAAATATTTTGAAAATAGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAAACTTGGACCATCTAGCCTTCAAATATTTTGAAAATAGTGG  640

seq1  CTAGTGAAAAATGAGACCCAGCATTGGAGATAAAGCAGTTGGCAGTAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAAAATGAGACCCAGCATTGGAGATAAAGCAGTTGGCAGTAGAA  690

seq1  GACACATCACCTTTTTAGTTCATGAGCAATGTCTAGGTCTTGGTATGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCACCTTTTTAGTTCATGAGCAATGTCTAGGTCTTGGTATGTGC  740

seq1  AAACATTAGCTTTTTTAAACACTAGGTCAAATGTCAAGAGCTACCAAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAGCTTTTTTAAACACTAGGTCAAATGTCAAGAGCTACCAAAGT  790

seq1  TCCTAATATTTGTAACCATTTCAAACACTAAACTTGATTAGCAAGAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATATTTGTAACCATTTCAAACACTAAACTTGATTAGCAAGAGGAG  840

seq1  GCAAACTATTTGGTTTTACTCTGGTGTTCATAAACACAGTGCCCATTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTATTTGGTTTTACTCTGGTGTTCATAAACACAGTGCCCATTGAT  890

seq1  AAGAAAATAATCTATTAGTACTGGGAGCAGATTTGCATTACTGCAAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAATCTATTAGTACTGGGAGCAGATTTGCATTACTGCAAAACT  940

seq1  AGAAAAATTTGGATATTACTGCTTTATAGTGTTCATATTTTAGAAGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTTGGATATTACTGCTTTATAGTGTTCATATTTTAGAAGCACT  990

seq1  TTATAGGTTCACTTTCTCAGACATGAATTGCTAAGATCTATCCTTAAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTTCACTTTCTCAGACATGAATTGCTAAGATCTATCCTTAAGTA  1040

seq1  CCTAATGTGTATGAACTTGAGCTTTGATATAATTGATTACTTTTAAGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTGTATGAACTTGAGCTTTGATATAATTGATTACTTTTAAGGTT  1090

seq1  AAATTTTTGACCTATTAAATTTATATATTACATGTTTTCATTGAATTATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTGACCTATTAAATTTATATATTACATGTTTTCATTGAATTATA  1140

seq1  TTGAATTC  1157
      ||||||||
seq2  TTGAATTC  1148

seq1: chr1_107412066_107413126
seq2: B6Ng01-039M21.g_67_1114

seq1  GAATTCCAATATATCACCCAGTCTCACAACCTTATTTCCATGACATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATATCACCCAGTCTCACAACCTTATTTCCATGACATTTAT  50

seq1  TTGATTCTCATCAACAATGTTCTTCCTGAGGAGTGCAAGCAGGTCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTCATCAACAATGTTCTTCCTGAGGAGTGCAAGCAGGTCTGGGA  100

seq1  TCAGGCTAGAGCACATACAGACGATGTCCAGACAACTCGCCTCTTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAGAGCACATACAGACGATGTCCAGACAACTCGCCTCTTGGCCT  150

seq1  GTTTCTACAAGCCTGCCCATAAAGTGTTATTTCTTCTCCCAGAGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACAAGCCTGCCCATAAAGTGTTATTTCTTCTCCCAGAGTTTCTC  200

seq1  TGACATTAAGGCCAAACTTCAAGGTCTAGAAAGGGAGTTGCCAACTCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAAGGCCAAACTTCAAGGTCTAGAAAGGGAGTTGCCAACTCCGT  250

seq1  AGGTAGAAGTCTTAGCAGTGGCCTTCAAGGTATAACATGGGGGAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAGTCTTAGCAGTGGCCTTCAAGGTATAACATGGGGGAGAGGAA  300

seq1  AAGGCCCAGAAACAAAAATACCTGACACTAGTGAAGGCCTTTCAGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCAGAAACAAAAATACCTGACACTAGTGAAGGCCTTTCAGTTGGT  350

seq1  CATAGCAACTGCCCAGGCTCCCTGGCCTCTCAATGCCCAAGAAATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAACTGCCCAGGCTCCCTGGCCTCTCAATGCCCAAGAAATCCCAG  400

seq1  GTTCCTGTCTCTAATACGATTGAGAGAACTGAAACAGGCTGACTTCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCTCTAATACGATTGAGAGAACTGAAACAGGCTGACTTCATGA  450

seq1  TAGGCATCAAACAGGTAGGTCAAGAGACTAGGCCTAGATCTTTACCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCAAACAGGTAGGTCAAGAGACTAGGCCTAGATCTTTACCAAAA  500

seq1  CTGGATAAGACCAGGCAAGTCAGTTACTAGAAAAACAAATAAACAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAAGACCAGGCAAGTCAGTTACTAGAAAAACAAATAAACAAACAA  550

seq1  AAACCCAGGTCTCCAGCAGCCAATTGGAAACTGCATCACCATCAGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGTCTCCAGCAGCCAATTGGAAACTGCATCACCATCAGAAGCT  600

seq1  GTCCCACCACTGCTGTGAATGGGTCTGTAGTTCTTGTGAACCAATCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCACTGCTGTGAATGGGTCTGTAGTTCTTGTGAACCAATCCCCT  650

seq1  AATGAATAATGAAGCCAATCACTGGTCAAGTAGGCAGGACTTCCAGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAATGAAGCCAATCACTGGTCAAGTAGGCAGGACTTCCAGGTTG  700

seq1  GACAGAGGAAGAGAGGAAGCAGGAGGGAGGGCCCTTTTCAGGCGGGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAAGAGAGGAAGCAGGAGGGAGGGCCCTTTTCAGGCGGGGATA  750

seq1  GCAACAGGATAAGATATAGATACGAGTGTCTCTAGGTTTCAGTGGTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGATAAGATATAGATACGAGTGTCTCTAGGTTTCAGTGGTGGCT  800

seq1  CCATCAGGATTTGCTAGGGGAGGATTTAATAAGGCTTACAAGATTAGAAT  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATCAGGATTTGCTA-GGGAGGATTTAATAAGGCTTACAAGATTAGAAT  849

seq1  TTTAGTTGCTGCGCCCAGCATTTGAGTTATCTTTGTTTCTGAAGTAAGTT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTAGTTGCTGCGCCCAGCATTTGAGTTATCTTTGTTTCTGAAGTAAG-T  898

seq1  TGTGTTGTGTTTTCCTTCTCATGGTGGCTCATCTGGGGTCTAGAGAGAAA  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTG-TGTGTTTTCCTTCTCATGGTGGCTCATCTGGGGTCTAGAGAGAAA  947

seq1  GGTATGGTGGCAAAGTGTGGGTTTGCCTGAGGTGCACCAAAGGTCGTGGG  1000
       ||||||||||||||||||||||||||||| |||||||||| ||||| ||
seq2  -GTATGGTGGCAAAGTGTGGGTTTGCCTGA-GTGCACCAAACGTCGT-GG  994

seq1  GGATTTGAAACACAGGGTTGTCGTGGTAGTGACCCGCCAGTGGAAACTTA  1050
      ||||||||||||||||  |||||| ||||||||||| |||||  ||| ||
seq2  GGATTTGAAACACAGG--TGTCGT-GTAGTGACCCG-CAGTG--AAC-TA  1037

seq1  GTGAGCTGGGT  1061
      |||||||||||
seq2  GTGAGCTGGGT  1048