BAC Information

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BAC

Clone NameB6Ng01-040D18
Chromosome1 (Build37)
Map Location 59,843,758 - 60,030,914
singlet/doubletdoublet
Overlap geneBmpr2, Als2cr13
Upstream geneCasp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007
Downstream geneLOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D18.bB6Ng01-040D18.g
ACCDH867266DH867267
length994687
definitionDH867266|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D18, 5' end.DH867267|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,030,386 - 60,030,914)(59,843,758 - 59,844,443)
sequence
gaattcatacaaaaaggtagagctgatgggatgagaaagccaaggggcaa
tttttgacagctattttcaatccaacctagaatctaacaattttttttta
gaagtccaattaccaacagtctacaaatgtagtttaaaacccaacctgtt
ttttgttttgtttcttgagacagggctttacatagcccagactggccaaa
gatgatcatgagtgatccttctcctccatcaagtgctggggttataggta
tataccatcacagcctgctttaatgctcaccttcctcaactatggaccca
tatggtgtcccataattgattgtgggttacaaaaaagctggcaagaatga
aagatttcttatgtagaacaaccgaagacaaagcaaaaatcaaacaccca
aggaagccctggcaccatagctgcacagtgcactttcactgcatgctggg
ctctgagcagagcatgtgctctacaccgcacactatcacaccacatgaac
acagggttcctgaaatccttaagcttggactcaagatcgtaaattatgaa
ctacagagtttttactgtacacacagctttctaatcttataaaaacataa
tcggtgctagggagagagctcagcagttaagagcactcactggctgctct
tctagaggaccttggttcaattcccagcacccgggggactggagagatgg
ctcagaggttaagagccctggctatccttccagaagtcctgagttcaatt
cccagcaaacacatggtggctcataaccatctgtaatgggatctgatgcc
ctcttctgggcctgcaggcatatacgcagggagaacattgtaaattaata
aataaataatccttaaaaaattctcagcacccatatggcagctcacaact
gtttgtaactacggttcactatatatgataccctcatacagacatacatg
cagtcaaacaccaaagcacatgaaatgatatatattaaaaacac
gaattcttagcaggcagtagaatgactgggaaagaattagggtaaggtct
gaaggaaatgattaattttcagaagaaccaacataggctgcagcctgatt
cctaatctgctatctcaacagcaacagttcactgtttcttatcttaatat
tttatttagcctttctcattattaaacgttcagagtatgttcatagagta
taaatttatttatttttgaggcgggttcttactatgtggcctggatgtcc
tgaaacttatgtagacaaggctgtcctcacactcagcacttgctgtcact
cagcactgagattgaaggagtgtgtcattatggcaggcccataggctttt
gctttctataagccttgttcatctgcaatactccaggatattaaacattt
attttcttcttcaggaacatttcatatacttcatataaatatatgaacat
atatttaatctttttgcagtctgtgagtcacaattagggcctcattgtat
gtttggctgatgcactgagttaatcagttctacttttatatttatttatt
tatttatttatttttggtttttggtttttcgagacagggtttctctgtgt
agccctggctgtcctggaactcactttgtagaccaggctggcctcgaact
cagaaatctgcctgcccctgtctccttgagtgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60030386_60030914
seq2: B6Ng01-040D18.b_44_572 (reverse)

seq1  TCCAAGCTTAAGGATTTCAGGAACCCTGTGTTCATGTGGTGTGATAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTAAGGATTTCAGGAACCCTGTGTTCATGTGGTGTGATAGTGT  50

seq1  GCGGTGTAGAGCACATGCTCTGCTCAGAGCCCAGCATGCAGTGAAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGTAGAGCACATGCTCTGCTCAGAGCCCAGCATGCAGTGAAAGTGC  100

seq1  ACTGTGCAGCTATGGTGCCAGGGCTTCCTTGGGTGTTTGATTTTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAGCTATGGTGCCAGGGCTTCCTTGGGTGTTTGATTTTTGCTTT  150

seq1  GTCTTCGGTTGTTCTACATAAGAAATCTTTCATTCTTGCCAGCTTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGGTTGTTCTACATAAGAAATCTTTCATTCTTGCCAGCTTTTTTG  200

seq1  TAACCCACAATCAATTATGGGACACCATATGGGTCCATAGTTGAGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACAATCAATTATGGGACACCATATGGGTCCATAGTTGAGGAAGG  250

seq1  TGAGCATTAAAGCAGGCTGTGATGGTATATACCTATAACCCCAGCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTAAAGCAGGCTGTGATGGTATATACCTATAACCCCAGCACTTG  300

seq1  ATGGAGGAGAAGGATCACTCATGATCATCTTTGGCCAGTCTGGGCTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGAAGGATCACTCATGATCATCTTTGGCCAGTCTGGGCTATGT  350

seq1  AAAGCCCTGTCTCAAGAAACAAAACAAAAAACAGGTTGGGTTTTAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGTCTCAAGAAACAAAACAAAAAACAGGTTGGGTTTTAAACTA  400

seq1  CATTTGTAGACTGTTGGTAATTGGACTTCTAAAAAAAAATTGTTAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGACTGTTGGTAATTGGACTTCTAAAAAAAAATTGTTAGATTC  450

seq1  TAGGTTGGATTGAAAATAGCTGTCAAAAATTGCCCCTTGGCTTTCTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGATTGAAAATAGCTGTCAAAAATTGCCCCTTGGCTTTCTCATC  500

seq1  CCATCAGCTCTACCTTTTTGTATGAATTC  529
      |||||||||||||||||||||||||||||
seq2  CCATCAGCTCTACCTTTTTGTATGAATTC  529

seq1: chr1_59843758_59844443
seq2: B6Ng01-040D18.g_68_754

seq1  GAATTCTTAGCAGGCAGTAGAATGACTGGGAAAGAATTAGGGTAAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGGCAGTAGAATGACTGGGAAAGAATTAGGGTAAGGTCT  50

seq1  GAAGGAAATGATTAATTTTCAGAAGAACCAACATAGGCTGCAGCCTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATGATTAATTTTCAGAAGAACCAACATAGGCTGCAGCCTGATT  100

seq1  CCTAATCTGCTATCTCAACAGCAACAGTTCACTGTTTCTTATCTTAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCTGCTATCTCAACAGCAACAGTTCACTGTTTCTTATCTTAATAT  150

seq1  TTTATTTAGCCTTTCTCATTATTAAACGTTCAGAGTATGTTCATAGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAGCCTTTCTCATTATTAAACGTTCAGAGTATGTTCATAGAGTA  200

seq1  TAAATTTATTTATTTTTGAGGCGGGTTCTTACTATGTGGCCTGGATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTATTTATTTTTGAGGCGGGTTCTTACTATGTGGCCTGGATGTCC  250

seq1  TGAAACTTATGTAGACAAGGCTGTCCTCACACTCAGCACTTGCTGTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTATGTAGACAAGGCTGTCCTCACACTCAGCACTTGCTGTCACT  300

seq1  CAGCACTGAGATTGAAGGAGTGTGTCATTATGGCAGGCCCATAGGCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGAGATTGAAGGAGTGTGTCATTATGGCAGGCCCATAGGCTTTT  350

seq1  GCTTTCTATAAGCCTTGTTCATCTGCAATACTCCAGGATATTAAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTATAAGCCTTGTTCATCTGCAATACTCCAGGATATTAAACATTT  400

seq1  ATTTTCTTCTTCAGGAACATTTCATATACTTCATATAAATATATGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTTCAGGAACATTTCATATACTTCATATAAATATATGAACAT  450

seq1  ATATTTAATCTTTTTGCAGTCTGTGAGTCACAATTAGGGCCTCATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATCTTTTTGCAGTCTGTGAGTCACAATTAGGGCCTCATTGTAT  500

seq1  GTTTGGCTGATGCACTGAGTTAATCAGTTCTACTTTTATATTTATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTGATGCACTGAGTTAATCAGTTCTACTTTTATATTTATTTATT  550

seq1  TATTTATTTATTTTTGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTTTGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGT  600

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  650

seq1  CAGAAATCTGCCTGCCCCTGTCTCC-TGAGTGCTGGG  686
      ||||||||||||||||||||||||| |||||||||||
seq2  CAGAAATCTGCCTGCCCCTGTCTCCTTGAGTGCTGGG  687